Publikationen von Dirk Walther
Zeitschriftenartikel (89)
1.
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241 (3), S. 1144 - 1160 (2023)
Genomic imprints of unparalleled growth. New Phytologist 2.
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5 (4), lqad097 (2023)
Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility. NAR: genomics and bioinformatics 3.
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116 (4), S. 1172 - 1193 (2023)
The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction. The Plant Journal 4.
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193 (2), S. 980 - 1000 (2023)
Metabolome plasticity in 241 Arabidopsis thaliana accessions reveals evolutionary cold adaptation processes. Plant Physiology 5.
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40 (9), msad194 (2023)
Updated phylogeny and protein structure predictions revise the hypothesis on the origin of MADS-box transcription factors in land plants. Molecular Biology and Evolution 6.
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39 (12), msac222 (2022)
Emergence of novel RNA editing sites by changes in the binding affinity of a conserved PPR protein. Molecular Biology and Evolution 7.
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45 (11), S. 3305 - 3321 (2022)
Comparative transcriptomics analysis reveals a calcineurin B-like gene to positively regulate constitutive and acclimated freezing tolerance in potato. Plant, Cell and Environment 8.
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4 (2), lqac027 (2022)
Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization. NAR: genomics and bioinformatics 9.
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13, 849329 (2022)
PRI: Re-analysis of a public mass cytometry dataset reveals patterns of effective tumor treatments. Frontiers in immunology 10.
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2 (1), vbac001 (2022)
Biclique extension as an effective approach to identify missing links in metabolic compound-protein interaction networks. Bioinformatics advances 11.
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22, 605 (2021)
COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 12.
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40 (15), e106800 (2021)
Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal 13.
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22 (1), 390 (2021)
Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana. BMC Genomics 14.
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19 (3), S. 477 - 489 (2021)
Deciphering Transcriptional Regulators of Banana Fruit Ripening by Regulatory Network Analysis. Plant Biotechnology Journal 15.
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22 (11), 6160 (2021)
Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 16.
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22 (11), 6123 (2021)
Genome-wide approach to identify quantitative trait loci for drought tolerance in tetraploid potato (Solanum tuberosum L.). International Journal of Molecular Sciences 17.
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48 (20), S. 11347 - 11369 (2020)
Determinants of correlated expression of transcription factors and their target genes. Nucleic Acids Research 18.
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10 (1), 7202 (2020)
Polymorphisms in miRNA binding sites involved in metabolic diseases in mice and humans. Scientific Reports 19.
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11, 1071 (2020)
Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? Frontiers in Plant Science 20.
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9 (3), 319 (2020)
Growth under fluctuating light reveals large trait variation in a panel of arabidopsis accessions. Plants 21.
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21 (8), 2794 (2020)
Similar yet different–structural and functional diversity among arabidopsis thaliana LEA_4 proteins. International Journal of Molecular Sciences 22.
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77, S. 705 - 718 (2020)
A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 23.
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43 (9), S. 2066 - 2079 (2020)
Metabolomic markers and physiological adaptations for high phosphate utilization efficiency in rice. Plant, Cell and Environment 24.
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180 (1), S. 654 - 681 (2019)
Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves. Plant Physiology 25.
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9 (6), 305 (2019)
Effect of Senescence Phenotypes and Nitrate Availability on Wheat Leaf Metabolome during Grain Filling. Agronomy 26.
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116 (12), S. 5665 - 5674 (2019)
Chloroplast competition is controlled by lipid biosynthesis in evening primroses. Proceedings of the National Academy of Sciences of the United States of America 27.
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5 (5), S. 525 - 538 (2019)
Control of retrograde signalling by protein import and cytosolic folding stress. Nature Plants 28.
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176 (3), S. 2251 - 2276 (2018)
Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiology 29.
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46 (16), S. 8114 - 8132 (2018)
A genome-wide scan for correlated mutations detects macromolecular and chromatin interactions in Arabidopsis thaliana. Nucleic Acids Research 30.
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16 (4), S. 939 - 950 (2018)
Metabolite and transcript markers for the prediction of potato drought tolerance. Plant Biotechnology Journal 31.
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10, 51 (2018)
Promising Metabolite Profiles in the Plasma and CSF of Early Clinical Parkinson's Disease. Frontiers in Aging Neuroscience 32.
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12, 226 (2018)
Metabolomic Profiles for Primary Progressive Multiple Sclerosis Stratification and Disease Course Monitoring. Frontiers in Human Neuroscience 33.
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8, 2048 (2017)
Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply. Frontiers in Plant Science 34.
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85 (1), S. 78 - 92 (2017)
Towards understanding the crosstalk between protein post-translational modifications: Homo- and heterotypic PTM pair distances on protein surfaces are not random. Proteins: Structure, Function, and Bioinformatics 35.
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91 (2), S. 251 - 262 (2017)
Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal 36.
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8, 1831 (2017)
Metabolic Pathway Assignment of Plant Genes based on Phylogenetic Profiling-A Feasibility Study. Frontiers in Plant Science 37.
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84 (5), S. 565 - 579 (2016)
Spatial proximity statistics suggest a regulatory role of protein phosphorylation on compound binding. Proteins-Structure Function and Bioinformatics 38.
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2 (4), 16040 (2016)
Mobile RNAs convey the message. Nature Plants 39.
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The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information. PLANT SYNTHETIC PROMOTERS: METHODS AND PROTOCOLS, S. 31 - 47 (2016)
40.
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17, 185 (2016)
The orientation of transcription factor binding site motifs in gene promoter regions: does it matter? BMC Genomics 41.
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39 (11), S. 2370 - 2389 (2016)
The drought response of potato reference cultivars with contrasting tolerance. Plant Cell Environment 42.
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28 (6), S. 1237 - 1249 (2016)
tRNA-Related Sequences Trigger Systemic mRNA Transport in Plants. Plant Cell 43.
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11 (6), S. 1587 - 1597 (2015)
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics 44.
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1, 15025 (2015)
Endogenous Arabidopsis messenger RNAs transported to distant tissues. Nature Plants 45.
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11 (2), e1004049 (2015)
The Roles of Post-translational Modifications in the Context of Protein Interaction Networks. PLoS Computational Biology 46.
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1306, S. 177 - 194 (2015)
Computational phosphorylation network reconstruction: methods and resources. Methods in Molecular Biology 47.
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2, 51 (2015)
Physicochemical characteristics of structurally determined metabolite-protein and drug-protein binding events with respect to binding specificity. Frontiers in molecular biosciences 48.
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15, 137 (2015)
Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge. BMC Plant Biology 49.
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42 (7), S. 655 - 667 (2015)
Assessment of drought tolerance and its potential yield penalty in potato. Functional Plant Biology 50.
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10 (3), S. e0120533 - e0120533 (2015)
Multiple RNA Processing Defects and Impaired Chloroplast Function in Plants Deficient in the Organellar Protein-Only RNase P Enzyme. PLoS One