Publikationen von Z. Nikoloski

Toubiana, D., Batushansky, A., Tzfadia, O., Scossa, F., Khan, A., Barak, S., Zamir, D., Fernie, A. R., Nikoloski, Z. & Fait, A. Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds. The Plant Journal 81, 121–133 (2015).

Weiwei, W., Li, K., Alseekh, S., Omranian, N., Zhao, L., Zhou, Y., Xiao, Y., Jin, M., Yang, N., Liu, H., Florian, A., Li, W., Pan, Q., Nikoloski, Z., Yan, J. & Fernie, A. R. Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population. The Plant Cell 27, 1839–1856 (2015).

Arnold, A. & Nikoloski, Z. Bottom-up Metabolic Reconstruction of Arabidopsis and Its Application to Determining the Metabolic Costs of Enzyme Production. Plant Physiology 165, 1380–1391 (2014).

Sauvage, C., Segura, V., Bauchet, G., Stevens, R., Do, P. T., Nikoloski, Z., Fernie, A. R. & Causse, M. Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits. Plant Physiology 165, 1120–1132 (2014).

Bellucci, E., Bitocchi, E., Ferrarini, A., Benazzo, A., Biagetti, E., Klie, S., Minio, A., Rau, D., Rodriguez, M., Panziera, A., Venturini, L., Attene, G., Albertini, E., Jackson, S. A., Nanni, L., Fernie, A. R., Nikoloski, Z., Bertorelle, G., Delledonne, M. & Papa, R. Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. The Plant Cell 26, 1901–1912 (2014).

Kleessen, S., Laitinen, R., Fusari, C. M., Antonio, C., Sulpice, R., Fernie, A. R., Stitt, M. & Nikoloski, Z. Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana. Nature Communications 5, (2014).

Arnold, A. & Nikoloski, Z. In search for an accurate model of the photosynthetic carbon metabolism. Mathematics and Computers in Simulation 96, 171–194 (2014).

Feher, K., Lisec, J., Römisch-Margl, L., Selbig, J., Gierl, A., Piepho, H.-P., Nikoloski, Z. & Willmitzer, L. Deducing Hybrid Performance from Parental Metabolic Profiles of Young Primary Roots of Maize by Using a Multivariate Diallel Approach. PLoS ONE 9, (2014).

Breuer, D., Ivakov, A., Sampathkumar, A., Hollandt, F., Persson, S. & Nikoloski, Z. Quantitative analyses of the plant cytoskeleton reveal underlying organizational principles. Interface: Journal of the Royal Society 11, (2014).

Breuer, D. & Nikoloski, Z. img2net: automated network-based analysis of imaged phenotypes. Bioinformatics 30, 3291–2 (2014).

Florian, A., Nikoloski, Z., Sulpice, R., Timm, S., Araujo, W. L., Tohge, T., Bauwe, H. & Fernie, A. R. Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7, 893–911 (2014).

Florian, A., Timm, S., Nikoloski, Z., Tohge, T., Bauwe, H., Araujo, W. L. & Fernie, A. R. Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56, 941–959 (2014).

Heise, R., Arrivault, S., Szecowka, M., Tohge, T., Nunes-Nesi, A., Stitt, M., Nikoloski, Z. & Fernie, A. R. Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9, 1803–1824 (2014).

Hu, C., Shi, J., Quan, S., Cui, B., Kleessen, S., Nikoloski, Z., Tohge, T., Alexander, D., Guo, L., Lin, H., Wang, J., Cui, X., Rao, J., Luo, Q., Zhao, X., Fernie, A. R. & Zhang, D. Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics. Scientific Reports 4, (2014).

Kleessen, S., Klie, S. & Nikoloski, Z. Concurrent Conditional Clustering of Multiple Networks: COCONETS. PLoS One 9, (2014).

Klie, S., Nikoloski, Z. & Selbig, J. Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 21, 428–445 (2014).

Klie, S., Osorio, S., Tohge, T., Drincovich, M. F., Fait, A., Giovannoni, J. J., Fernie, A. R. & Nikoloski, Z. Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164, 55–68 (2014).

Meret, M., Kopetzki, D., Degenkolbe, T., Kleessen, S., Nikoloski, Z., Tellstroem, V., Barsch, A., Kopka, J., Antonietti, M. & Willmitzer, L. From systems biology to systems chemistry: metabolomic procedures enable insight into complex chemical reaction networks in water. RSC Advances 4, 16777–16781 (2014).

Mettler, T., Mühlhaus, T., Hemme, D., Schöttler, M. A., Rupprecht, J., Idoine, A., Veyel, D., Pal, S. K., Yaneva-Roder, L., Winck, F. V., Sommer, F., Vosloh, D., Seiwert, B., Erban, A., Burgos, A., Arvidsson, S., Schönfelder, S., Arnold, A., Günther, M., Krause, U., Lohse, M., Kopka, J., Nikoloski, Z., Mueller-Roeber, B., Willmitzer, L., Bock, R., Schroda, M. & Stitt, M. Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26, 2310–2350 (2014).

Recht, L., Toepfer, N., Batushansky, A., Sikron, N., Gibon, Y., Fait, A., Nikoloski, Z., Boussiba, S. & Zarka, A. Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen Starvation in the Green Algae Haematococcus pluvialis. The Journal of Biological Chemistry 289, 30387–30403 (2014).