Publikationen von S. Alseekh

López, C. M., Alseekh, S., Rivas, F. J. M., Fernie, A. R., Prieto, P. & Alamillo, J. M. CRISPR/Cas9 editing of two adenine phosphoribosyl transferase coding genes reveals the functional specialization of adenine salvage proteins in common bean. Journal of Experimental Botany 76, 346–362 (2025).

Tiozon, R. J. N., Alseekh, S., Fernie, A. R., Bonto, A. P., Yu, J., Buenafe, R. J. Q. & Sreenivasulu, N. Comprehensive lipidomic insights of differentially accumulating lipids in large pigmented rice sprout collection and the changes in the starch composition upon germination. Food Chemistry 460, (2024).

von Steimker, J., Tripodi, P., Wendenburg, R., Tringovska, I., Nankar, A. N., Stoeva, V., Pasev, G., Klemmer, A., Todorova, V., Bulut, M., Tikunov, Y., Bovy, A., Gechev, T., Kostova, D., Fernie, A. R. & Alseekh, S. The genetic architecture of the pepper metabolome and the biosynthesis of its signature capsianoside metabolites. Current Biology 34, 4209–4223 (2024).

Badoni, S., Pasion-Uy, E. A., Kor, S., Kim, S.-R., Tiozon, R. J. N., Misra, G., Buenafe, R. J. Q., Labarga, L. M., Ramos-Castrosanto, A. R., Pratap, V., Slamet-Loedin, I., von Steimker, J., Alseekh, S., Fernie, A. R., Kohli, A., Khush, G. S. & Sreenivasulu, N. Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content. Proceedings of the National Academy of Sciences of the United States of America 121, (2024).

Zhang, Y. J., Wiese, L., Fang, H., Alseekh, S., de Souza, L. P., Scossa, F., Molloy, J., Christmann, M. & Fernie, A. R. Synthetic biology identifies the minimal gene set required for Paclitaxel biosynthesis in a plant chassis. Molecular Plant 16, 1951–1961 (2023).

Bulut, M., Nunes-Nesi, A., Fernie, A. R. & Alseekh, S. Characterization of PetM cytochrome b6f subunit 7 domain-containing protein in tomato. Horticulture Research 10, (2023).

Aarabi, F., Ghigi, A., Wijesingha Ahchige, M., Bulut, M., Geigenberger, P., Neuhaus, H. E., Sampathkumar, A., Alseekh, S. & Fernie, A. R. Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant Physiology 193, 2037–2054 (2023).

Bulut, M., Alseekh, S. & Fernie, A. R. Natural variation of respiration-related traits in plants. Plant Physiology 191, 2120–2132 (2023).

Bellucci, E., Benazzo, A., Xu, C., Bitocchi, E., Rodriguez, M., Alseekh, S., Di Vittori, V., Gioia, T., Neumann, K., Cortinovis, G., Frascarelli, G., Murube, E., Trucchi, E., Nanni, L., Ariani, A., Logozzo, G., Shin, J. H., Liu, C., Jiang, L., Ferreira, J. J., Campa, A., Attene, G., Morrell, P. L., Bertorelle, G., Graner, A., Gepts, P., Fernie, A. R., Jackson, S. A. & Papa, R. Selection and adaptive introgression guided the complex evolutionary history of the European common bean. Nature Communications 14, (2023).

Sun, Y., Alseekh, S. & Fernie, A. R. Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants. GCB Bioenergy 29, 477–504 (2023).

Zhu, F., Jadhav, S. S., Tohge, T., Salem, M. A., Li, J. M., Giovannoni, J. J., Cheng, Y., Alseekh, S. & Fernie, A. R. A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. Plant Physiology 190, 250–266 (2022).

Tabatabaei, I., Alseekh, S., Shahid, M., Leniak, E., Wagner, M., Mahmoudi, H., Thushar, S., Fernie, A. R., Murphy, K. M., Schmöckel, S. M., Tester, M., Mueller-Roeber, B., Skirycz, A. & Balazadeh, S. The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9, (2022).

Fernie, A. R. & Alseekh, S. Metabolomic selection–based machine learning improves fruit taste prediction. Proceedings of the National Academy of Sciences of the United States of America 199, (2022).

Fernie, A. R. & Alseekh, S. Unravelling the molecular networks that regulate kiwifruit flavor. New Phytologist 233, 8–10 (2022).

Zhu, F., Alseekh, S., Wen, W., Cheng, Y. & Fernie, A. R. Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming. Autophagy 18, 457–458 (2021).

Zhu, F., Alseekh, S., Koper, K., Tong, H., Nikoloski, Z., Naake, T., Liu, H., Yan, J., Brotman, Y., Wen, W., Maeda, H., Cheng, Y. & Fernie, A. R. Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell 34, 557–578 (2021).

Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D’Auria, J., Ewald, J., C. Ewald, J., Fraser, P. D., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., de Souza, L. P., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S., Siuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R. Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18, 747–756 (2021).

Moreno, J. C., Rojas, B. E., Vicente, R., Gorka, M., Matz, T., Kosmacz, M., Peralta-Ariza, J. S., Zhang, Y. J., Alseekh, S., Childs, D., Luzarowski, M., Nikoloski, Z., Zarivach, R., Walther, D., Hartman, M. D., Figueroa, C. M., Iglesias, A. A., Fernie, A. R. & Skirycz, A. Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal 40, (2021).

de Souza, L. P., Alseekh, S., Scossa, F. & Fernie, A. R. Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods 18, 733–746 (2021).

Sreenivasulu, N., Alseekh, S., Tiozon, R. N., Graner, A., Martin, C. & Fernie, A. R. Metabolic Signatures from Genebank Collections: An Underexploited Resource for Human Health? Annual Review of Food Science and Technology 14, 183–202 (2023).