Publikationen von J. Kopka

Mettler, T., Mühlhaus, T., Hemme, D., Schöttler, M. A., Rupprecht, J., Idoine, A., Veyel, D., Pal, S. K., Yaneva-Roder, L., Winck, F. V., Sommer, F., Vosloh, D., Seiwert, B., Erban, A., Burgos, A., Arvidsson, S., Schönfelder, S., Arnold, A., Günther, M., Krause, U., Lohse, M., Kopka, J., Nikoloski, Z., Mueller-Roeber, B., Willmitzer, L., Bock, R., Schroda, M. & Stitt, M. Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26, 2310–2350 (2014).

Schmidt, S., Dethloff, F., Beine-Golovchuk, O. & Kopka, J. REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays with homologs of the yeast RLP24, RPl24a, RLP24b, ARX1, and jjj1 proteins. Plant Signaling & Behavior 9, (2014).

Schroeder, F., Lisso, J., Obata, T., Erban, A., Maximova, E., Giavalisco, P., Kopka, J., Fernie, A. R., Willmitzer, L. & Muessig, C. Consequences of induced brassinosteroid deficiency in Arabidopsis leaves. BMC Plant Biology 14, (2014).

Schwarz, D., Orf, I., Kopka, J. & Hagemann, M. Effects of Inorganic Carbon Limitation on the Metabolome of the Synechocystis sp. PCC 6803 Mutant Defective in glnB Encoding the Central Regulator PII of Cyanobacterial C/N Acclimation. Metabolites 4, 232–247 (2014).

Agudelo-Romero, P., Erban, A., Sousa, L., Pais, M. S., Kopka, J. & Fortes, A. M. Search for Transcriptional and Metabolic Markers of Grape Pre-Ripening and Ripening and Insights into Specific Aroma Development in Three Portuguese Cultivars. PLoS One 8, (2013).

Degenkolbe, T., Do, P. T., Kopka, J., Zuther, E., Hincha, D. K. & Koehl, K. I. Identification of Drought Tolerance Markers in a Diverse Population of Rice Cultivars by Expression and Metabolite Profiling. PLoS One 8, (2013).

Do, P. T., Degenkolbe, T., Erban, A., Heyer, A. G., Kopka, J., Koehl, K. I., Hincha, D. K. & Zuther, E. Dissecting Rice Polyamine Metabolism under Controlled Long-Term Drought Stress. PLoS One 8, (2013).

Hauf, W., Schlebusch, M., Huege, J., Kopka, J., Hagemann, M. & Forchhammer, K. Metabolic Changes in Synechocystis PCC6803 upon Nitrogen-Starvation: Excess NADPH Sustains Polyhydroxybutyrate Accumulation. Metabolites 3, 101–118 (2013).

Perez-Delgado, C. M., Garcia-Calderon, M., Sanchez, D. H., Udvardi, M. K., Kopka, J., Marquez, A. J. & Betti, M. Transcriptomic and Metabolic Changes Associated with Photorespiratory Ammonium Accumulation in the Model Legume Lotus japonicus. Plant Physiology 162, 1834–1848 (2013).

Schmidt, S., Dethloff, F., Beine-Golovchuk, O. & Kopka, J. The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiology 163, 1623–1639 (2013).

Schwarz, D., Orf, I., Kopka, J. & Hagemann, M. Recent Applications of Metabolomics Toward Cyanobacteria. Metabolites 3, 72–100 (2013).

Strehmel, N., Kopka, J., Scheel, D. & Böttcher, C. Annotating unknown components from GC/EI-MS-based metabolite profiling experiments using GC/APCI(+)-QTOFMS. Metabolics 10, 324–336 (2013).

Watanabe, M., Balazadeh, S., Tohge, T., Erban, A., Giavalisco, P., Kopka, J., Mueller-Roeber, B., Fernie, A. R. & Hoefgen, R. Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162, 1290–1310 (2013).

Anetzberger, C., Reiger, M., Fekete, A., Schell, U., Stambrau, N., Plener, L., Kopka, J., Schmitt-Kopplin, P., Hilbi, H. & Jung, K. Autoinducers act as biological timers in Vibrio harveyi. PLoS One 7, e48310 (2012).

Beisser, D., Grohme, M. A., Kopka, J., Frohme, M., Schill, R. O., Hengherr, S., Dandekar, T., Klau, G. W., Dittrich, M. & Muller, T. Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. BMC Systems Biology 6, 72 (2012).

Calingacion, M. N., Boualaphanh, C., Daygon, V. D., Anacleto, R., Sackville Hamilton, R., Biais, B., Deborde, C., Maucourt, M., Moing, A., Mumm, R., de Vos, R. C. H., Erban, A., Kopka, J., Hansen, T. H., Laursen, K. H., Schjoerring, J. K., Hall, R. D. & Fitzgerald, M. A. A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics 8, 771–783 (2012).

Dunn, W. B., Erban, A., Weber, R. J. M., Creek, D. J., Brown, M., Breitling, R., Hankemeier, T., Goodacre, R., Neumann, S., Kopka, J. & Viant, M. R. Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics. Metabolomics 9, 44–66 (2012).

Fuehrs, H., Specht, A., Erban, A., Kopka, J. & Horst, W. J. Functional associations between the metabolome and manganese tolerance in Vigna unguiculata. Journal of Experimental Botany 63, 329–340 (2012).

Hackenberg, C., Huege, J., Engelhardt, A., Wittink, F., Laue, M., Matthijs, H. C., Kopka, J., Bauwe, H. & Hagemann, M. Low-carbon acclimation in carboxysome-less and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Microbiology 158, 398–413 (2012).

Rohloff, J., Kopka, J., Erban, A., Winge, P., Wilson, R. C., Bones, A. M., Davik, J., Randall, S. K. & Alsheikh, M. K. Metabolite profiling reveals novel multi-level cold responses in the diploid model Fragaria vesca (woodland strawberry). Phytochemistry 77, 99–109 (2012).