Publikationen von Z. Nikoloski

Ruprecht, C., Mutwil, M., Saxe, F., Eder, M., Nikoloski, Z. & Persson, S. Large-scale co-expression approach to dissect secondary cell wall formation across plant species. Frontiers in Plant Science 2, 23 (2011).

Klie, S., Nikoloski, Z. & Selbig, J. Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 17, 1–18 (2010).

Nikoloski, Z., May, P. & Selbig, J. Algebraic connectivity may explain the evolution of gene regulatory networks. Journal of Theoretical Biology 267, 7–14 (2010).

Sajitz-Hermstein, M. & Nikoloski, Z. A novel approach for determining environment-specific protein costs: the case of Arabidopsis thaliana. Bioinformatics 26, i582–i588 (2010).

Childs, L., Nikoloski, Z., May, P. & Walther, D. Identification and classification of ncRNA molecules using graph properties. Nucleic Acids Research 37, e66 (2009).

Szymanski, J., Jozefczuk, S., Nikoloski, Z., Selbig, J., Nikiforova, V., Catchpole, G. & Willmitzer, L. Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli - A Systems Approach. PLoS One 4, e7441 (2009).

Basler, G., Nikoloski, Z., Ebenhoeh, O. & Handorf, T. Biosynthetic potentials from species-specific metabolic networks. Genome Informatics 20, 135–148 (2008).

Brandes, U., Delling, D., Gaertler, M., Gorke, R., Hoefer, M., Nikoloski, Z. & Wagner, D. On modularity clustering. IEEE Transactions on Knowledge and Data Engineering 20, 172–188 (2008).

Nikoloski, Z., Grimbs, S., May, P. & Selbig, J. Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology 254, 807–816 (2008).

Nikoloski, Z., Grimbs, S., Selbig, J. & Ebenhoeh, O. Hardness and Approximability of the Inverse Scope Problem. Algorithms in Bioinformatics, Wabi 2008 5251, 99–112 (2008).

de Abreu e Lima, F., Leifels, L. & Nikoloski, Z. in Plant Metabolomics: Methods and Protocols (Hrsg. António, C.) 321–327 (Humana Press, 2018). doi:10.1007/978-1-4939-7819-9_23

Küken, A. & Nikoloski, Z. in Methods in Molecular Biology 1653, 195–202 (Elsevier, 2017).

Omranian, N. & Nikoloski, Z. in Plant gene Regulatory Networks 1629, 283–295 (Springer, 2017).

Kleessen, S. & Nikoloski, Z. in Molecular Mechanisms in Plant Adaptation 193–215 (Wiley-Blackwell, 2015). auf <http://hdl.handle.net/11858/00-001M-0000-0029-24BA-0>

Angeleska, A., Kleessen, S. & Nikoloski, Z. in Discrete and Topological Models in Molecular Biology (Hrsg. Jonoska , N. & Saito, M.) 23–43 (Springer-Verlag, 2014). doi:10.1007/978-3-642-40193-0__2

Redestig, H., Szymanski, J., Hirai, M. Y., Selbig, J., Willmitzer, L., Saito, K. & Nikoloski, Z. in Biology of Plant Metabolomics (Hrsg. Hall, R. D.) (Wiley-Blackwell, 2011). doi:10.1002/9781444339956.ch9

Omranian, N. & Nikoloski, Z. CUBCO: Prediction of Protein Complexes Based on Min-cut Network Partitioning into Biclique Spanned Subgraphs. Studies in Computational Intelligence (Springer International Publishing, 2022). doi:10.1007/978-3-030-93413-2_50

Sajitz-Hermstein, M. & Nikoloski, Z. Sensitivity of Contending Cellular Objectives in the Central Carbon Metabolism of Escherichia Coli. in Information Processing in Cells and Tissues 169–172 (2015). doi:10.1007/978-3-319-23108-2_14

Larhlimi, A., Basler, G., Grimbs, S., Selbig, J. & Nikoloski, Z. Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. in 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) I502–I508 (2012). doi:10.1093/bioinformatics/bts381

Basler, G., Grimbs, S., Selbig, J. & Nikoloski, Z. Thermodynamic landscapes of randomized large-scale metabolic networks. in 7th International Workshop on Computational Systems Biology, WCSB 2010 (Hrsg. Nykter, M., Ruusuvuori, P., Carlberg, C. & Yli-Harja, O.) 23–26 (Tampere International Center for Signal Processing, 2010). auf <http://hdl.handle.net/11858/00-001M-0000-0014-2463-2>