Archiv der bisher stattgefundenen Seminare

Gastgeber: Yariv Brotman

Michal Shapira

Michele Zaccai - Exploring the regulation of flowering in lily

August 2016
Lilium longiflorum (Easter lily) is a leading ornamental bulbouscrop worldwide. Lily flowering time is primarily controlled by cold exposure(vernalization). We investigated the response of lily to vernalization using atranscriptome assembled from meristems of cooled and non-cooled bulbs, followedby expression analyses and gene annotation. Full cDNA coding sequences ofseveral genes overexpressed in lily and Arabidopsis altered their floweringtime. Other experiments showedthat, contrarily to the common assumption, Easter lily doesn't have anobligatory requirement for vernalization and that bulb size controls floweringpathways. [mehr]

Jerry Eichler - Sweet and Extreme: N-glycosylation in the Archaea

July 2016
It is now clear that N-glycosylation, the covalent linkage of glycans to select asparagine residues of target proteins, is a post-translational modification that occurs across evolution. While understanding of the eukaryal and bacterial versions of this universal protein-processing event is relatively advanced, far less is known of N-glycosylation in Archaea. This, despite the fact that N-glycosylation is seemingly widespread in Archaea and that archaeal N-linked glycans present diversity in composition and structure not seen elsewhere. Relying on the halophilic archaea Haloferax volcanii, originally isolated from the Dead Sea, as a model system, work in our group has tried to fill this void. Accordingly, bioinformatics, genetic, mass spectrometry and biochemical approaches have been employed to delineate the pathways used for the assembly of two distinct glycans N-linked to target proteins in Hfx. volcanii. The same general strategy is now being used to better understand N-glycosylation pathways in other Archaea. As such, our studies on archaeal N-glycosylation not only expand understanding of a universal post-translational modification, they also provide novel insight into life at extremes. [mehr]
In plants and animals, induced resistance (IR) to biotic and abiotic stress is associated with priming of cells for faster and stronger activation of defense responses. Cell priming involves accumulation of latent signaling components that are not used until challenge exposure to stress. During development of induced resistance in Arabidopsis thaliana, priming is associated with accumulation of mRNA and inactive proteins of mitogen-activated protein kinases (MPKs), MPK3 and MPK6. Upon challenge exposure to biotic or abiotic stress, these two enzymes are more strongly activated in primed plants than in nonprimed plants. This elevated activation is linked to enhanced defense gene expression and development of IR. Because the identity of most in vivo MPK target proteins remained elusive, we developed a robust and powerful method to identify and quantify site-specific phosphorylation of low-abundant MPK substrates on a large scale. Our approach represents a two-step chromatographic procedure combining phosphoprotein enrichment using Al(OH)3-based metal oxide affinity chromatography (MOAC), tryptic digest of enriched phosphoproteins, and TiO2-based MOAC to enrich phosphopeptides. When applied to transgenic conditional gain-of-function Arabidopsis plants supporting in planta activation of MPKs, the tandem-MOAC approach allows direct measurement and quantification ex vivo of site-specific phosphorylation of several reported and many so far unknown, MPK substrates in a single experiment. [mehr]

Untargeted metabolomics in plant and food research

Metabolomics strategies, and particularly the large-scale untargeted approaches in which all metabolites detected - both known and yet unknown - are taken into consideration, have provided us novel and detailed insights into metabolites and biochemical pathways that are key to traits of plants and products derived thereof. At Plant Research International we focus mostly on accurate mass LCMS, GCTOFMS and GCqMS based untargeted metabolomics techniques, either separately or combined as complementary platforms. In this seminar a few examples of our projects dealing with both technology development and strategic research in (crop) plant and food research will be highlighted. [mehr]
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