Archiv der bisher stattgefundenen Seminare

Gastgeber: Arun Sampathkumar

Remodeling the plant cell wall from the inside out

May 2023

Remodeling the plant cell wall from the inside out

May 2023

Mastering the maze – how plant sperm reach their mating partners

March 2023

Mastering the maze – how plant sperm reach their mating partners

März 2023

Exploring the cellular basis of organ curvature using 3D digital ovules

Philip Wigge - How do plants sense temperature?

November 2019

Robert Sablowski

May 2019

Alex Costa - In vivo calcium dynamics in plant cells: a holistic view

March 2019

Angela Hay - Explosive seed dispersal

Staffan Persson - Plants and plumbing; A design guide to efficient water transportation

Abstract: The plant xylem is one of the most important evolutionary innovations for terrestrial life, as it allowed plants to adapt and growth to significant stature. The xylem cells are encased by thickened cell walls that reinforce them and that are typically organized in spiraling or reticulate patterns. These wall types are largely assembled from the polysaccharide cellulose, which is synthesized at the plasma membrane by large cellulose synthase (CesA) complexes. The CesAs move along linear tracks at the plasma membrane, which is likely due to the catalytic activity of the proteins. The direction of the CesA movement is thought to be steered by cortical microtubules via the protein Cellulose Synthase Interacting (CSI)1; however, this is not clarified for secondary wall synthesis. In addition, it is unclear how the microtubules are re-arranged to support patterns of the cell walls and how this transition affect cellulose synthesis. In this talk I will outline how microtubules re-arrange themselves to support the transition between primary and secondary wall cellulose synthesis. These results will provide a framework to understand how patterned secondary walls emerge. [mehr]

Ari Pekka Mähönen - Cell Fate Decisions in the Arabidopsis Root Cambium

Despite the importance of the vascular cambium in plant biology and in wood production, the molecular and cellular mechanisms underlying cambial activity remain largely unknown. Particularly, it is unknown where the cambial stem cells are located, and how the stem cell niche is organized to drive cambial growth.In animal stem cell studies lineage tracing has been the method for locating the stem cells. In this method single cell clones marked with reporter expression are generated within a population of dividing cells. The clones are transmitted to all daughter cells of the initial cell, resulting in a marked sector within the tissue. By analysing the size and distribution of the sectors the position and the mitotic activity of dividing cells and stem cells can be deduced. In order to understand the cell lineage relations in the Arabidopsis root cambium, we generated GUS/GFP sectors by using two step CRE-lox based clonal activation system. To understand which cells in the primary tissue contribute to the cambium formation we induced single cell clones during the primary development of the root and analysed the growing sectors during the secondary development. We also generated marked sectors in active cambium to map the position of stem cells and to understand the growth dynamics of the cambial cells. In my seminar presentation I will explain how we are utilizing the lineage tracing data to provide mechanistic understanding of cambium regulation. [mehr]

Magalie Uyttewaal - Regulation of Plant Cell Growth and Division by new Family of Microtubule Associated Proteins

Abstract:The presence of reproducible developmental patterns and shapes in plants underlies mechanisms that ensure the robustness and coordination of cellular processes such as cell division orientation and cell growth. When a plant cell divides, a new wall is built that connects existing ones and separates daughter cytoplasms. This wall firmly binds every plant cell to its neighbors and prevents any migration. As a consequence, the topology of plant tissues mostly results from the orientation of mitoses and cell growth. Every aspects of cell growth and division involve the microtubule cytoskeleton with specialized microtubule arrays that accompany each stage of plant cell development.We have identified a major organizer of cortical microtubule arrays, the TTP complex (which contains TON1, TRM and PP2A proteins), and were able to uncouple its role in interphase from its role in mitosis by isolating specific G2/M and interphasic isoforms. The contributions of these specialized isoforms to the robustness of cell growth, cell division and plant development will be presented. [mehr]
SNARE proteins catalyse the final step inmembrane fusion with their cognate SNARE partners through tight interaction viatheir cytosolic N-terminal domains. Their C-terminal membrane anchor pulls theopposite membranes together, overcoming the strong dehydration forces associatedwith the lipid bilayer and ultimately leading to fusion of the two membranes.This important function is prerequisite to a multitude of vital cellularfunctions such as trafficking of cargo to the outside of the cell or addingadditional membrane material to the plasma membrane for expansion.In yeast and mammals integration oftail-anchored (TA) membrane proteins seems to be facilitated via cytosoliccomponents in an ATP-dependent fashion. This ‘Guided-Entry of TA proteins’(GET) pathway has not been described in plants where research focusses on theimport pathways into chloroplasts and mitochondria. How the abundance of SNAREand other important TA proteins are integrated into the ER membrane in plantsis currently entirely unknown.We have identified the candidates involved in aputative GET pathway of Arabidopsis.Our data show that plants have evolved multiple orthologues of specific GETpathway components, albeit in a compartment-specific manner. In contrast,others seem to be absent in plants suggesting differences in the proteininsertion mechanism or the development of alternative pathways. The latterhypothesis is supported by highly specific rather than general phenotypesassociated with loss-of-function lines highlighting the plant’s need for backupinsertion mechanisms. [mehr]

Jan Traas - Flower development: from morphodynamics to morphomechanics

Flower development : from morphodynamics to morphomechanics The shoot apical meristem (SAM) continuously generates leaves, flowers, and branches in higher plants. In the past decades, many components of the gene regulatory networks in the SAM have been identified. However, little is known about the spatiotemporal coordination between gene expression patterns and growth at cellular resolution. This lack of understanding is mainly due to the lack of comprehensive quantification of organ wide cell properties over time with regards to the underlying molecular networks. We address this problem in early flower development of Arabidopsis thaliana using high resolution confocal time lapse imaging, combined with genetic and biophysical approaches. Hereby we are focusing on the cell wall, which plays a central role in the control of growth rates and growth directions. Recent relevant publications from our team : Ali O, Traas J* (2016) Force-Driven Polymerization and Turgor-Induced Wall Expansion. Trends Plant Sci. 2016 May;21(5):398-409. Theoretical analysis. Boudon F, Chopard J, Ali O, Gilles B, Hamant O, Boudaoud A, Traas J*, Godin* C. (2015) A computational framework for 3D mechanical modeling of plant morphogenesis with cellular resolution.PLoS Comput Biol. 2015 Jan 8;11(1):e1003950. Sassi M, Ali O, Boudon F, Cloarec G, Abad U, Cellier C, Chen X, Gilles B, Milani P, Friml J, Vernoux T, Godin C, Hamant O, Traas J. (2014) An auxin-mediated shift toward growth isotropy promotes organ formation at the shoot meristem in Arabidopsis . Curr Biol. 2014 Oct 6;24(19):2335-42 Vernoux T, Brunoud G, Farcot E, Morin V, Van den Daele H, Legrand J, Oliva M, Das P, Larrieu A, Wells D, Guédon Y, Armitage L, Picard F, Guyomarc'h S, Cellier C, Parry G, Koumproglou R, Doonan JH, Estelle M, Godin C, Kepinski S, Bennett M, De Veylder L, Traas J. (2012) The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol Syst Biol. 2011 Jul 5;7:508. [mehr]

Richard S. Smith - Quantifying morphogenesis with MorphoGraphX

Morphogenesis emerges from complex interactions between genetic and mechanical processes. Computer simulation models are becoming increasingly important to aid our understanding of the complexity involved, in an emerging field that is now being called Computational Morphodynamics. Key to this methodology is the combination of experimental work with dynamic, spatial simulation modeling. In order to analyze shape change in developing organs, it is essential to be able to quantify cell shape and gene expression changes at cellular resolution, over multiple time points. Ideally, a full 3D quantification of shape change and gene reporter expression over time is desired. Unfortunately, this is often technically challenging. In cases where the processes of interest occur on a surface layer of cells, 2D (i.e. max) projections can be used. However on highly curved organs and tissues, flat projections can introduce too much distortion to accurately record cell shape change. Here I will present a new image processing software called MorphoGraphX that bridges this gap by working directly with curved surface images extracted from 3D data. After recognizing the shape of a 3D sample, the surface is extracted and the signal is projected on the surface to form a curved “2.5D” image. I will demonstrate many of the tools we have developed to enable image processing on these 2.5D images, and how to use them to quantify 4D confocal time-lapse data sets. Finally, I will present our inroads towards developing an integrated simulation and imaging environment for Computational Morphodynamics. [mehr]
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