Nikoloski, Z.; Perez-Storey, R.; Sweetlove, L. J.: Inference and Prediction of Metabolic Network Fluxes. Plant Physiology 169 (3), S. 1443 - 1455 (2015)

Omranian, N.; Kleessen, S.; Tohge, T.; Klie, S.; Basler, G.; Mueller-Roeber, B.; Fernie, A. R.; Nikoloski, Z.: Differential metabolic and coexpression networks of plant metabolism. Trends in Plant Science 20 (5), S. 266 - 268 (2015)

Omranian, N.; Mueller-Roeber, B.; Nikoloski, Z.: Segmentation of biological multivariate time-series data. Scientific Reports 5, S. 8937 - 8937 (2015)

Toepfer, N.; Kleessen, S.; Nikoloski, Z.: Integration of metabolomics data into metabolic networks. Frontiers in Plant Science 6, 49 (2015)

Toubiana, D.; Batushansky, A.; Tzfadia, O.; Scossa, F.; Khan, A.; Barak, S.; Zamir, D.; Fernie, A. R.; Nikoloski, Z.; Fait, A.: Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds. The Plant Journal 81 (1), S. 121 - 133 (2015)

Weiwei, W.; Li, K.; Alseekh, S.; Omranian, N.; Zhao, L.; Zhou, Y.; Xiao, Y.; Jin, M.; Yang, N.; Liu, H. et al.; Florian, A.; Li, W.; Pan, Q.; Nikoloski, Z.; Yan, J.; Fernie, A. R.: Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population. The Plant Cell 27 (7), S. 1839 - 1856 (2015)

Bellucci, E.; Bitocchi, E.; Ferrarini, A.; Benazzo, A.; Biagetti, E.; Klie, S.; Minio, A.; Rau, D.; Rodriguez, M.; Panziera, A. et al.; Venturini, L.; Attene, G.; Albertini, E.; Jackson, S. A.; Nanni, L.; Fernie, A. R.; Nikoloski, Z.; Bertorelle, G.; Delledonne, M.; Papa, R.: Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. The Plant Cell 26 (5), S. 1901 - 1912 (2014)

Kleessen, S.; Laitinen, R.; Fusari, C. M.; Antonio, C.; Sulpice, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana. Nature Communications 5, 3537 (2014)

Arnold, A.; Nikoloski, Z.: In search for an accurate model of the photosynthetic carbon metabolism. Mathematics and Computers in Simulation 96, S. 171 - 194 (2014)

Feher, K.; Lisec, J.; Römisch-Margl, L.; Selbig, J.; Gierl, A.; Piepho, H.-P.; Nikoloski, Z.; Willmitzer, L.: Deducing Hybrid Performance from Parental Metabolic Profiles of Young Primary Roots of Maize by Using a Multivariate Diallel Approach. PLoS ONE 9 (1), e85435 (2014)

Breuer, D.; Ivakov, A.; Sampathkumar, A.; Hollandt, F.; Persson, S.; Nikoloski, Z.: Quantitative analyses of the plant cytoskeleton reveal underlying organizational principles. Interface: Journal of the Royal Society 11 (97), 20140362 (2014)

Breuer, D.; Nikoloski, Z.: img2net: automated network-based analysis of imaged phenotypes. Bioinformatics 30 (22), S. 3291 - 2 (2014)

Breuer, D.; Timme, M.; Memmesheimer, R.-M.: Statistical Physics of Neural Systems with Nonadditive Dendritic Coupling. Physical Review X 4 (1), 011053 (2014)

Estevez, S.; Nikoloski, Z.: Generalized framework for context-specific metabolic model extraction methods. Frontiers in Plant Science 5, S. 491 - 491 (2014)

Florian, A.; Nikoloski, Z.; Sulpice, R.; Timm, S.; Araujo, W. L.; Tohge, T.; Bauwe, H.; Fernie, A. R.: Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7 (5 Special Issue), S. 893 - 911 (2014)

Heise, R.; Arrivault, S.; Szecowka, M.; Tohge, T.; Nunes-Nesi, A.; Stitt, M.; Nikoloski, Z.; Fernie, A. R.: Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9 (8), S. 1803 - 1824 (2014)

Hu, C.; Shi, J.; Quan, S.; Cui, B.; Kleessen, S.; Nikoloski, Z.; Tohge, T.; Alexander, D.; Guo, L.; Lin, H. et al.; Wang, J.; Cui, X.; Rao, J.; Luo, Q.; Zhao, X.; Fernie, A. R.; Zhang, D.: Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomicsd. Scientific Reports 4, 5067 (2014)

Kleessen, S.; Klie, S.; Nikoloski, Z.: Concurrent Conditional Clustering of Multiple Networks: COCONETS. PLoS One 9 (8), e103637 (2014)

Klie, S.; Osorio, S.; Tohge, T.; Drincovich, M. F.; Fait, A.; Giovannoni, J. J.; Fernie, A. R.; Nikoloski, Z.: Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164 (1), S. 55 - 68 (2014)

Meret, M.; Kopetzki, D.; Degenkolbe, T.; Kleessen, S.; Nikoloski, Z.; Tellstroem, V.; Barsch, A.; Kopka, J.; Antonietti, M.; Willmitzer, L.: From systems biology to systems chemistry: metabolomic procedures enable insight into complex chemical reaction networks in water. RSC Advances 4 (32), S. 16777 - 16781 (2014)