May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), S. 157 - 166 (2008)

Nikoloski, Z.; Grimbs, S.; Selbig, J.; Ebenhoeh, O.: Hardness and Approximability of the Inverse Scope Problem. Algorithms in Bioinformatics, Wabi 2008 5251, S. 99 - 112 (2008)

Christian, N.; Handorf, T.; Ebenhoeh, O.: Metabolic Synergy: Increasing Biosynthetic Capabilities by Network Cooperation. Genome Informatics 18 (1), S. 320 - 329 (2007)

Küken, A.; Nikoloski, Z.: Genome-scale modeling of photorespiratory pathway manipulation. In: Methods in Molecular Biology, Bd. 1653, S. 195 - 202. Elsevier, Cambridge, MA (2017)

Omranian, N.; Nikoloski, Z.: Computational Approaches to Study Gene Regulatory Networks. In: Plant gene Regulatory Networks, Bd. 1629, S. 283 - 295. Springer, heidelberg (2017)

Angeleska, A.; Kleessen, S.; Nikoloski, Z.: The Sequence Reconstruction Problem. In: Discrete and Topological Models in Molecular Biology, S. 23 - 43 (Hg. Jonoska , N.; Saito, M.). Springer-Verlag, Berlin, Heidelberg (2014)

Kartal, O.; Ebenhoeh, O.: The glucan, water dikinase - a kinetic model to understand the initial step in starch mobilization in plant leaves. In: From Computational Biophysics to Systems Biology, Bd. 40, S. 245 - 248 (Hg. Hansmann, U.H.E.; Meinke, J.H.; Mohanty, S.; Nadler, W.; Zimmermann, O.). John von Neumann Institute for Computing, Jülich, GER (2008)

Sajitz-Hermstein, M.; Nikoloski, Z.: Sensitivity of Contending Cellular Objectives in the Central Carbon Metabolism of Escherichia Coli. In: Information Processing in Cells and Tissues, S. 169 - 172. 10th International Conference on Information Processing in Cells and Tissues (IPCAT), San Diego, CA, 14. September 2015 - 16. September 2015. (2015)

Larhlimi, A.; Basler, G.; Grimbs, S.; Selbig, J.; Nikoloski, Z.: Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. In: 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB), S. I502 - I508. 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) , Basel, SWITZERLAND. (2012)