Nunes-Nesi, A.; Alseekh, S.; de Silva, O.; Magnum, F.; Omranian, N.; Lichtenstein, G.; Mirnezhad, M.; González, R. R. R.; Garcia, J. S. y.; Conte, M. et al.; Leiss, K. A.; Klinkhamer, P. G. L.; Nikoloski, Z.; Carrari, F.; Fernie, A. R.: Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds. Metabolomics 15 (4), 46 (2019)

Pandey, P. K.; Yu, J.; Omranian, N.; Alseekh, S.; Vaid, N.; Fernie, A. R.; Nikoloski, Z.; Laitinen, R.: Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations. Plant Direct 3 (11), e00186 (2019)

Song, Y.; Li, G.; Nowak, J.; Zhang, X.; Xu, D.; Yang, X.; Huang, G.; Liang, W.; Yang, L.; Wang, C. et al.; Bulone, V.; Nikoloski, Z.; Hu, J.; Persson, S.; Zhang, D.: The Rice Actin-Binding Protein RMD Regulates Light-Dependent Shoot Gravitropism. Plant Physiology 181 (2), S. 630 - 644 (2019)

Yu, Y.; Wu, S.; Nowak, J.; Wang, G.; Han, L.; Feng, Z.; Mendrinna, A.; Ma, Y.; Wang, H.; Zhang, X. et al.; Tian, J.; Dong, L.; Nikoloski, Z.; Persson, S.; Kong, Z.: Live-cell imaging of the cytoskeleton in elongating cotton fibres. Nature Plants 5 (5), S. 498 - 504 (2019)

Janowski, M.; Zoschke, R.; Scharff, L. B.; Martinez-Jaime, S.; Ferrari, C.; Proost, S.; Ng Wei Xiong, J.; Omranian, N.; Musialak-Lange, M.; Nikoloski, Z. et al.; Graf, A.; Schöttler, M. A.; Sampathkumar, A.; Vaid, N.; Mutwil, M.: AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96 (2), S. 404 - 420 (2018)

Basler, G.; Fernie, A. R.; Nikoloski, Z.: Advances in metabolic flux analysis toward genome-scale profiling of higher organisms. Bioscience Reports 38 (6), 6 (2018)

Cubillos, A.; Tong, H.; Alseekh, S.; de Abreu e Lima, F.; Yu, J.; Fernie, A. R.; Nikoloski, Z.; Laitinen, R.: Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat. Heredity 120, S. 463 - 473 (2018)

de Abreu e Lima, F.; Li, K.; Wen, W.; Yan, J.; Nikoloski, Z.; Willmitzer, L.; Brotman, Y.: Unraveling lipid metabolism in maize with time-resolved multi-omics data. The Plant Journal 93 (6), S. 1102 - 1115 (2018)

de Abreu e Lima, F.; Willmitzer, L.; Nikoloski, Z.: Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots. PLoS One 13 (4), e0196038 (2018)

Hansen, B. O.; Meyer, E. H.; Ferrari, C.; Vaid, N.; Movahedi, S.; Vandepoele, K.; Nikoloski, Z.; Mutwil, M.: Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana. New Phytologist 217 (4), S. 1521 - 1534 (2018)

Küken, A.; Sommer, F.; Yaneva-Roder, L.; Mackinder, L. C. M.; Höhne, M.; Geimer, S.; Jonikas, M. C.; Schroda, M.; Stitt, M.; Nikoloski, Z. et al.; Mettler, T.: Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts. eLife 7, e37960 (2018)

Scheunemann, M.; Brady, S. M.; Nikoloski, Z.: Integration of large-scale data for extraction of integrated Arabidopsis root cell-type specific models. Scientific Reports 8 (1), 7919 (2018)

Vallarino, J. G.; de Abreu e Lima, F.; Soria, C.; Tong, H.; Pott, D. M.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.; Osorio, S.: Genetic diversity of strawberry germplasm using metabolomic biomarkers. Scientific Reports 8 (1), 14386 (2018)

Wu, S.; Tohge, T.; Cuadros-Inostroza, A. C.; Tong, H.; Tenenboim, H.; Kooke, R.; Méret, M.; Keurentjes, J. B.; Nikoloski, Z.; Fernie, A. R. et al.; Willmitzer, L.; Brotman, Y.: Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions. Molecular Plant 11 (1), S. 118 - 134 (2018)

Alseekh, S.; Tong, H. (Mathematical Modelling and Systems Biology - Nikoloski, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society), H.; Scossa, F.; Brotman, Y.; Vigroux, F.; Tohge, T.; Ofner, I.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Canalization of Tomato Fruit Metabolism. Plant Cell 29 (11), S. 2753 - 2765 (2017)

Annunziata, M. G.; Apelt, F.; Carillo, P.; Krause, U.; Feil, R.; Mengin, V.; Lauxmann, M.; Koehl, K. I.; Nikoloski, Z.; Stitt, M. et al.; Lunn, J. E.; Raines, C.: Getting back to nature: a reality check for experiments in controlled environments. Journal of Experimental Botany 68 (16), S. 4463 - 4477 (2017)

Apelt, F.; Breuer, D.; Olas, J. J.; Annunziata, M. G.; Flis, A.; Nikoloski, Z.; Kragler, F.; Stitt, M.: Circadian, Carbon, and Light Control of Expansion Growth and Leaf Movement. Plant Physiology 174 (3), S. 1949 - 1968 (2017)

Breuer, D.; Nowak, J.; Ivako, A.; Somssich, M.; Persson, S.; Nikoloski, Z.: System-wide organization of actin cytoskeleton determines organelle transport in hypocotyl plant cells. Proceedings of the National Academy of Sciences of the United States of America 114 (28), S. E5741 - E5749 (2017)

de Abreu e Lima, F.; Westhues, M.; Cuadros-Inostroza, Á.; Willmitzer, L.; Melchinger, A. E.; Nikoloski, Z.: Metabolic robustness in young roots underpins a predictive model of maize hybrid performance in the field. The Plant Journal 90 (2), S. 319 - 329 (2017)

Estevez, S.; Nikoloski, Z.: On the effects of alternative optima in context-specific metabolic model predictions. PLoS Computational Biology 13 (5), e1005568 (2017)