Publikationen von Z. Nikoloski

Angeleska, A. & Nikoloski, Z. Coherent network partitions. Discrete applied mathematics 266, 283–290 (2019).

Clemente-Moreno, J. M., Omranian, N., Sáez, P., Figueroa, C. M., Del-Saz, N., Elso, M., Poblete, L., Orf, I., Cuadros-Inostroza, A., Cavieres, L., Bravo, L., Fernie, A. R., Ribas-Carbó, M., Flexas, J., Nikoloski, Z., Brotman, Y. & Gago, J. Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis. New Phytologist 225, 754–768 (2019).

Ferrari, C., Proost, S., Janowski, M., Becker, J., Nikoloski, Z., Bhattacharya, D., Price, D., Tohge, T., Bar-Even, A., Fernie, A. R., Stitt, M. & Mutwil, M. Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, (2019).

Küken, A., Eloundou-Mbebi, J. M. O., Basler, G. & Nikoloski, Z. Cellular determinants of metabolite concentration ranges. PLoS Computational Biology 15, (2019).

Küken, A. & Nikoloski, Z. Computational Approaches to Design and Test Plant Synthetic Metabolic Pathways. Plant Physiology 179, 894–906 (2019).

Laitinen, R. & Nikoloski, Z. Genetic basis of plasticity in plants. Journal of Experimental Botany 70, 739–745 (2019).

Langary, D. & Nikoloski, Z. Inference of chemical reaction networks based on concentration profiles using an optimization framework. Chaos: An Interdisciplinary Journal of Nonlinear Science 29, 113121 (2019).

Nunes-Nesi, A., Alseekh, S., de Silva, O., Magnum, F., Omranian, N., Lichtenstein, G., Mirnezhad, M., González, R. R. R., Garcia, J. S. y., Conte, M., Leiss, K. A., Klinkhamer, P. G. L., Nikoloski, Z., Carrari, F. & Fernie, A. R. Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds. Metabolomics 15, (2019).

Pandey, P. K., Yu, J., Omranian, N., Alseekh, S., Vaid, N., Fernie, A. R., Nikoloski, Z. & Laitinen, R. Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations. Plant Direct 3, (2019).

Song, Y., Li, G., Nowak, J., Zhang, X., Xu, D., Yang, X., Huang, G., Liang, W., Yang, L., Wang, C., Bulone, V., Nikoloski, Z., Hu, J., Persson, S. & Zhang, D. The Rice Actin-Binding Protein RMD Regulates Light-Dependent Shoot Gravitropism. Plant Physiology 181, 630–644 (2019).

Yu, Y., Wu, S., Nowak, J., Wang, G., Han, L., Feng, Z., Mendrinna, A., Ma, Y., Wang, H., Zhang, X., Tian, J., Dong, L., Nikoloski, Z., Persson, S. & Kong, Z. Live-cell imaging of the cytoskeleton in elongating cotton fibres. Nature Plants 5, 498–504 (2019).

Janowski, M., Zoschke, R., Scharff, L. B., Martinez-Jaime, S., Ferrari, C., Proost, S., Ng Wei Xiong, J., Omranian, N., Musialak-Lange, M., Nikoloski, Z., Graf, A., Schöttler, M. A., Sampathkumar, A., Vaid, N. & Mutwil, M. AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96, 404–420 (2018).

Basler, G., Fernie, A. R. & Nikoloski, Z. Advances in metabolic flux analysis toward genome-scale profiling of higher organisms. Bioscience Reports 38, (2018).

Cubillos, A., Tong, H., Alseekh, S., de Abreu e Lima, F., Yu, J., Fernie, A. R., Nikoloski, Z. & Laitinen, R. Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat. Heredity 120, 463–473 (2018).

de Abreu e Lima, F., Li, K., Wen, W., Yan, J., Nikoloski, Z., Willmitzer, L. & Brotman, Y. Unraveling lipid metabolism in maize with time-resolved multi-omics data. The Plant Journal 93, 1102–1115 (2018).

de Abreu e Lima, F., Willmitzer, L. & Nikoloski, Z. Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots. PLoS One 13, (2018).

Hansen, B. O., Meyer, E. H., Ferrari, C., Vaid, N., Movahedi, S., Vandepoele, K., Nikoloski, Z. & Mutwil, M. Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana. New Phytologist 217, 1521–1534 (2018).

Küken, A., Sommer, F., Yaneva-Roder, L., Mackinder, L. C. M., Höhne, M., Geimer, S., Jonikas, M. C., Schroda, M., Stitt, M., Nikoloski, Z. & Mettler, T. Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts. eLife 7, (2018).

Scheunemann, M., Brady, S. M. & Nikoloski, Z. Integration of large-scale data for extraction of integrated Arabidopsis root cell-type specific models. Scientific Reports 8, (2018).

Vallarino, J. G., de Abreu e Lima, F., Soria, C., Tong, H., Pott, D. M., Willmitzer, L., Fernie, A. R., Nikoloski, Z. & Osorio, S. Genetic diversity of strawberry germplasm using metabolomic biomarkers. Scientific Reports 8, (2018).