Publikationen von J. Kopka

Zeitschriftenartikel (211)

181.
Zeitschriftenartikel
Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmueller, E.; Doermann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M. et al.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D.: GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (8), S. 1635 - 1638 (2005)
182.
Zeitschriftenartikel
Lisso, J.; Steinhauser, D.; Altmann, T.; Kopka, J.; Muessig, C.: Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Research 33 (8), S. 2685 - 2696 (2005)
183.
Zeitschriftenartikel
Lohse, S.; Schliemann, W.; Ammer, C.; Kopka, J.; Strack, D.; Fester, T.: Organization and metabolism of plastids and mitochondria in arbuscular mycorrhizal roots of Medicago truncatula. Plant Physiology 139 (1), S. 329 - 340 (2005)
184.
Zeitschriftenartikel
Nikiforova, V. J.; Kopka, J.; Tolstikov, V.; Fiehn, O.; Hopkins, L.; Hawkesford, M. J.; Hesse, H.; Hoefgen, R.: Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of arabidopsis plants. Plant Physiology 138 (1), S. 304 - 318 (2005)
185.
Zeitschriftenartikel
Rautengarten, C.; Steinhauser, D.; Buessis, D.; Stintzi, A.; Schaller, A.; Kopka, J.; Altmann, T.: Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family. PLoS Computational Biology 1 (4), S. e40 (2005)
186.
Zeitschriftenartikel
Schauer, N.; Steinhauser, D.; Strelkov, S.; Schomburg, D.; Allison, G.; Moritz, T.; Lundgren, K.; Roessner-Tunali, U.; Forbes, M. G.; Willmitzer, L. et al.; Fernie, A. R.; Kopka, J.: GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Letters 579 (6), S. 1332 - 1337 (2005)
187.
Zeitschriftenartikel
Scholz, M.; Kaplan, F.; Guy, C. L.; Kopka, J.; Selbig, J.: Non-linear PCA: a missing data approach. Bioinformatics 21 (20), S. 3887 - 3895 (2005)
188.
Zeitschriftenartikel
Urbanczyk-Wochniak, E.; Baxter, C.; Kolbe, A.; Kopka, J.; Sweetlove, L. J.; Fernie, A. R.: Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves. Planta 221 (6), S. 891 - 903 (2005)
189.
Zeitschriftenartikel
Bino, R. J.; Hall, R. D.; Fiehn, O.; Kopka, J.; Saito, K.; Draper, J.; Nikolau, B. J.; Mendes, P.; Roessner-Tunali, U.; Beale, M. H. et al.; Trethewey, R. N.; Lange, B. M.; Wurtele, E. S.; Sumner, L. W.: Potential of metabolomics as a functional genomics tool. Trends in Plant Science 9 (9), S. 418 - 425 (2004)
190.
Zeitschriftenartikel
Colebatch, G.; Desbrosses, G.; Ott, T.; Krusell, L.; Montanari, O.; Kloska, S.; Kopka, J.; Udvardi, M. K.: Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus. Plant Journal 39 (4), S. 487 - 512 (2004)
191.
Zeitschriftenartikel
Jenkins, H.; Hardy, N.; Beckmann, M.; Draper, J.; Smith, A. R.; Taylor, J.; Fiehn, O.; Goodacre, R.; Bino, R. J.; Hall, R. et al.; Kopka, J.; Lane, G. A.; Lange, B. M.; Liu, J. R.; Mendes, P.; Nikolau, B. J.; Oliver, S. G.; Paton, N. W.; Rhee, S.; Roessner-Tunali, U.; Saito, K.; Smedsgaard, J.; Sumner, L. W.; Wang, T.; Walsh, S.; Wurtele, E. S.; Kell, D. B.: A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotechnology 22 (12), S. 1601 - 1606 (2004)
192.
Zeitschriftenartikel
Kaplan, F.; Kopka, J.; Haskell, D. W.; Zhao, W.; Schiller, K. C.; Gatzke, N.; Sung, D. Y.; Guy, C. L.: Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiology 136 (4), S. 4159 - 4168 (2004)
193.
Zeitschriftenartikel
Klotke, J.; Kopka, J.; Gatzke, N.; Heyer, A. G.: Impact of soluble sugar concentrations on the acquisition of freezing tolerance in accessions of Arabidopsis thaliana with contrasting cold adaptation - evidence for a role of raffinose in cold acclimation. Plant Cell and Environment 27 (11), S. 1395 - 1404 (2004)
194.
Zeitschriftenartikel
Luedemann, A.; Weicht, D.; Selbig, J.; Kopka, J.: PaVESy: Pathway visualization and editing system. Bioinformatics 20 (16), S. 2841 - 2844 (2004)
195.
Zeitschriftenartikel
Steinhauser, D.; Junker, B. H.; Luedemann, A.; Selbig, J.; Kopka, J.: Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20 (12), S. 1928 - 1939 (2004)
196.
Zeitschriftenartikel
Steinhauser, D.; Usadel, B.; Luedemann, A.; Thimm, O.; Kopka, J.: CSB.DB: a comprehensive systems-biology database. Bioinformatics 20 (18), S. 3647 - 3651 (2004)
197.
Zeitschriftenartikel
Birkemeyer, C.; Kolasa, A.; Kopka, J.: Comprehensive chemical derivatization for gas chromatography-mass spectrometry-based multi-targeted profiling of the major phytohormones. Journal of Chromatography A 993 (1-2), S. 89 - 102 (2003)
198.
Zeitschriftenartikel
Hunt, L.; Mills, L. N.; Pical, C.; Leckie, C. P.; Aitken, F. L.; Kopka, J.; Mueller-Roeber, B.; McAinsh, M. R.; Hetherington, A. M.; Gray, J. E.: Phospholipase C is required for the control of stomatal aperture by ABA. Plant Journal 34 (1), S. 47 - 55 (2003)
199.
Zeitschriftenartikel
Urbanczyk-Wochniak, E.; Luedemann, A.; Kopka, J.; Selbig, J.; Roessner-Tunali, U.; Willmitzer, L.; Fernie, A. R.: Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4 (10), S. 989 - 993 (2003)
200.
Zeitschriftenartikel
Wagner, C.; Sefkow, M.; Kopka, J.: Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62 (6), S. 887 - 900 (2003)
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