Publikationen von Z. Nikoloski

Zeitschriftenartikel (195)

181.
Zeitschriftenartikel
Hempel, S.; Koseska, A.; Nikoloski, Z.; Kurths, J.: Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study. BMC Bioinformatics 12, S. 292 (2011)
182.
Zeitschriftenartikel
Hempel, S.; Kurths, J.; Koseska, A.; Nikoloski, Z.: Inner Composition Alignment for Inferring Directed Networks from Short Time Series. Physical Review Letters 107 (5), S. 054101 (2011)
183.
Zeitschriftenartikel
Lisec, J.; Romisch-Margl, L.; Nikoloski, Z.; Piepho, H. P.; Giavalisco, P.; Selbig, J.; Gierl, A.; Willmitzer, L.: Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns. The Plant Journal 68 (2), S. 326 - 336 (2011)
184.
Zeitschriftenartikel
Mutwil, M.; Klie, S.; Tohge, T.; Giorgi, F. M.; Wilkins, O.; Campbell, M. M.; Fernie, A. R.; Usadel, B.; Nikoloski, Z.; Persson, S.: PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23 (3), S. 895 - 910 (2011)
185.
Zeitschriftenartikel
Nikoloski, Z.; Grimbs, S.; Klie, S.; Selbig, J.: Complexity of automated gene annotation. Biosystems 104 (1), S. 1 - 8 (2011)
186.
Zeitschriftenartikel
Ruprecht, C.; Mutwil, M.; Saxe, F.; Eder, M.; Nikoloski, Z.; Persson, S.: Large-scale co-expression approach to dissect secondary cell wall formation across plant species. Frontiers in Plant Science 2, S. 23 (2011)
187.
Zeitschriftenartikel
Klie, S.; Nikoloski, Z.; Selbig, J.: Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 17, S. 1 - 18 (2010)
188.
Zeitschriftenartikel
Nikoloski, Z.; May, P.; Selbig, J.: Algebraic connectivity may explain the evolution of gene regulatory networks. Journal of Theoretical Biology 267 (1), S. 7 - 14 (2010)
189.
Zeitschriftenartikel
Sajitz-Hermstein, M.; Nikoloski, Z.: A novel approach for determining environment-specific protein costs: the case of Arabidopsis thaliana. Bioinformatics 26 (18), S. i582 - i588 (2010)
190.
Zeitschriftenartikel
Childs, L.; Nikoloski, Z.; May, P.; Walther, D.: Identification and classification of ncRNA molecules using graph properties. Nucleic Acids Research 37 (9), S. e66 (2009)
191.
Zeitschriftenartikel
Szymanski, J.; Jozefczuk, S.; Nikoloski, Z.; Selbig, J.; Nikiforova, V.; Catchpole, G.; Willmitzer, L.: Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli - A Systems Approach. PLoS One 4 (10), S. e7441 (2009)
192.
Zeitschriftenartikel
Basler, G.; Nikoloski, Z.; Ebenhoeh, O.; Handorf, T.: Biosynthetic potentials from species-specific metabolic networks. Genome Informatics 20, S. 135 - 148 (2008)
193.
Zeitschriftenartikel
Brandes, U.; Delling, D.; Gaertler, M.; Gorke, R.; Hoefer, M.; Nikoloski, Z.; Wagner, D.: On modularity clustering. IEEE Transactions on Knowledge and Data Engineering 20 (2), S. 172 - 188 (2008)
194.
Zeitschriftenartikel
Nikoloski, Z.; Grimbs, S.; May, P.; Selbig, J.: Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology 254 (4), S. 807 - 816 (2008)
195.
Zeitschriftenartikel
Nikoloski, Z.; Grimbs, S.; Selbig, J.; Ebenhoeh, O.: Hardness and Approximability of the Inverse Scope Problem. Algorithms in Bioinformatics, Wabi 2008 5251, S. 99 - 112 (2008)

Buchkapitel (6)

196.
Buchkapitel
de Abreu e Lima, F.; Leifels, L.; Nikoloski, Z.: Regression-Based Modeling of Complex Plant Traits Based on Metabolomics Data. In: Plant Metabolomics: Methods and Protocols, S. 321 - 327 (Hg. António, C.). Humana Press, New York (2018)
197.
Buchkapitel
Küken, A.; Nikoloski, Z.: Genome-scale modeling of photorespiratory pathway manipulation. In: Methods in Molecular Biology, Bd. 1653, S. 195 - 202. Elsevier, Cambridge, MA (2017)
198.
Buchkapitel
Omranian, N.; Nikoloski, Z.: Computational Approaches to Study Gene Regulatory Networks. In: Plant gene Regulatory Networks, Bd. 1629, S. 283 - 295. Springer, heidelberg (2017)
199.
Buchkapitel
Kleessen, S.; Nikoloski, Z.: Computational Approaches to Dissect and Understand Mechanisms of Adaptation. In: Molecular Mechanisms in Plant Adaptation, S. 193 - 215. Wiley-Blackwell, Malden (2015)
200.
Buchkapitel
Angeleska, A.; Kleessen, S.; Nikoloski, Z.: The Sequence Reconstruction Problem. In: Discrete and Topological Models in Molecular Biology, S. 23 - 43 (Hg. Jonoska , N.; Saito, M.). Springer-Verlag, Berlin, Heidelberg (2014)
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