Publikationen von A. R. Fernie

Finkemeier, I., König, A.-C., Heard, W., Nunes-Nesi, A., Pham, P. A., Leister, D., Fernie, A. R. & Sweetlove, L. J. Transcriptomic Analysis of the Role of Carboxylic Acids in Metabolite Signaling in Arabidopsis Leaves. Plant Physiology 162, 239–253 (2013).

Toepfer, N., Caldana, C., Grimbs, S., Willmitzer, L., Fernie, A. R. & Nikoloski, Z. Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis. The Plant Cell 25, 1197–1211 (2013).

Araujo, W. L., Trofimova, L., Mkrtchyan, G., Steinhauser, D., Krall, L., Graf, A., Fernie, A. R. & Bunik, V. I. On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism. Amino Acids 44, 683–700 (2013).

Antonio, C., Mustafa, N. R., Osorio, S., Tohge, T., Giavalisco, P., Willmitzer, L., Rischer, H., Oksman-Caldentey, K. M., Verpoorte, R. & Fernie, A. R. Analysis of the interface between primary and secondary metabolism in Catharanthus roseus cell cultures using 13C-stable isotope feeding and coupled mass spectrometry. Molecular Plant 6, 581–584 (2013).

Archacki, R., Buszewicz, D., Sarnowski, T. J., Sarnowska, E., Rolicka, A. T., Tohge, T., Fernie, A. R., Jikumaru, Y., Kotlinski, M., Iwanicka-Nowicka, R., Kalisiak, K., Patryn, J., Halibart-Puzio, J., Kamiya, Y., Davis, S. J., Koblowska, M. K. & Jerzmanowski, A. BRAHMA ATPase of the SWI/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis. PLoS One 8, (2013).

Bocobza, S. E., Malitsky, S., Araujo, W. L., Nunes-Nesi, A., Meir, S., Shapira, M., Fernie, A. R. & Aharoni, A. Orchestration of Thiamin Biosynthesis and Central Metabolism by Combined Action of the Thiamin Pyrophosphate Riboswitch and the Circadian Clock in Arabidopsis. The Plant Cell 25, 288–307 (2013).

Brotman, Y., Landau, U., Cuadros-Inostroza, A., Tohge, T., Fernie, A. R., Chet, I., Viterbo, A. & Willmitzer, L. Trichoderma-Plant Root Colonization: Escaping Early Plant Defense Responses and Activation of the Antioxidant Machinery for Saline Stress Tolerance. PLoS Pathogens 9, (2013).

Caldana, C., Li, Y., Leisse, A., Zhang, Y., Bartholomaeus, L., Fernie, A. R., Willmitzer, L. & Giavalisco, P. Systemic Analysis of Inducible Target of Rapamycin Mutants Reveal a General Metabolic Switch Controlling Growth in Arabidopsis thaliana. The Plant Journal 73, 897–909 (2013).

de Godoy, F., Bermudez, L., Lira, B. S., de Souza, A. P., Elbl, P., Demarco, D., Alseekh, S., Insani, M., Buckeridge, M., Almeida, J., Grigioni, G., Fernie, A. R., Carrari, F. & Rossi, M. Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. Journal of Experimental Botany 64, 2449–2466 (2013).

Detmann, K., Araujo, W., Martins, S., Fernie, A. R. & Damatta, F. Metabolic alterations triggered by silicon nutrition: Is there a signaling role for silicon? Plant Signaling & Behavior 8, e22523 (2013).

Di Matteo, A., Ruggieri, V., Sacco, A., Rigano, M., Carriero, F., Bolger, A., Fernie, A. R., Frusciante, L. & Barone, A. Identification of candidate genes for phenolic accumulation in tomato fruit. Plant Science 205-206, 87–96 (2013).

Dominguez, P. G., Frankel, N., Mazuch, J., Balbo, I., Iusem, N. D., Fernie, A. R. & Carrari, F. Asr1 Mediates Glucose-Hormone Crosstalk by Affecting Sugar Trafficking in Tobacco Plants. Plant Physiology 161, 1486–1500 (2013).

Fernie, A. R. & Morgan, J. A. Analysis of metabolic flux using dynamic labeling and metabolic modeling. Plant, Cell and Environment 36, 1738–1750 (2013).

Fernie, A. R. & Tohge, T. Plastic, fantastic! Phenotypic variance in the transcriptional landscape of the grape berry. Genome Biology 14, (2013).

Fernie, A. R. & Usadel, B. The plant transcriptome – from integrating observations to models. Frontiers in Plant Science 4, 48 (2013).

Garchery, C., Gest, N., Do, P. T., Alhagdow, M., Baldet, P., Menard, G., Rothan, C., Massot, C., Gautier, H., Aarrouf, J., Fernie, A. R. & Stevens, R. A diminution in ascorbate oxidase activity affects carbon allocation and improves yield in tomato under water deficit. Plant Cell and Environment 36, 159–175 (2013).

Gupta, K. J., Brotman, Y., Segu, S., Zeier, T., Zeier, J., Persijn, S. T., Cristescu, S. M., Harren, F. J., Bauwe, H., Fernie, A. R., Kaiser, W. M. & Mur, L. A. The form of nitrogen nutrition affects resistance against Pseudomonas syringae pv. phaseolicola in tobacco. Journal of Experimental Botany 64, 553–868 (2013).

Koenig, D., Jimenez-Gomez, J. M., Kimura, S., Fulop, D., Chitwood, D. H., Headland, L. R., Kumar, R., Covington, M. F., Devisetty, U. K., Tat, A. V., Tohge, T., Bolger, A. M., Schneeberger, K., Ossowski, S., Lanz, C., Xiong, G., Taylor-Teeples, M., Brady, S. M., Pauly, M., Weigel, D., Usadel, B., Fernie, A. R., Peng, J., Sinha, N. R. & Maloof, J. N. Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America 110, E2655–E2662 (2013).

Luo, T., Luo, S., Araujo, W. L., Schlicke, H., Rothbart, M., Yu, J., Fan, T., Fernie, A. R., Grimm, B. & Luo, M. Virus-induced gene silencing of pea CHLI and CHLD affects tetrapyrrole biosynthesis, chloroplast development and the primary metabolic network. Plant physiology and biochemistry 65C, 17–26 (2013).

Merchante, C., Vallarino, J. G., Osorio, S., Araguez, I., Villarreal, N., Ariza, M. T., Martinez, G. A., Medina-Escobar, N., Civello, M. P., Fernie, A. R., Botella, M. A. & Valpuesta, V. Ethylene is involved in strawberry fruit ripening in an organ-specific manner. Journal of experimental botany 64, 4421–4439 (2013).