Lisso, J.; Steinhauser, D.; Altmann, T.; Kopka, J.; Muessig, C.: Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Research 33 (8), S. 2685 - 2696 (2005)

Rautengarten, C.; Steinhauser, D.; Buessis, D.; Stintzi, A.; Schaller, A.; Kopka, J.; Altmann, T.: Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family. PLoS Computational Biology 1 (4), S. e40 (2005)

Schauer, N.; Steinhauser, D.; Strelkov, S.; Schomburg, D.; Allison, G.; Moritz, T.; Lundgren, K.; Roessner-Tunali, U.; Forbes, M. G.; Willmitzer, L. et al.; Fernie, A. R.; Kopka, J.: GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Letters 579 (6), S. 1332 - 1337 (2005)

Usadel, B.; Kuschinsky, A. M.; Steinhauser, D.; Pauly, M.: Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery. Plant Biosystems 139 (1), S. 69 - 73 (2005)

Steinhauser, D.; Junker, B. H.; Luedemann, A.; Selbig, J.; Kopka, J.: Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20 (12), S. 1928 - 1939 (2004)

Steinhauser, D.; Usadel, B.; Luedemann, A.; Thimm, O.; Kopka, J.: CSB.DB: a comprehensive systems-biology database. Bioinformatics 20 (18), S. 3647 - 3651 (2004)

Krueger, S.; Steinhauser, D.; Lisec, J.; Giavalisco, P.: Analysis of Subcellular Metabolite Distributions Within Arabidopsis thaliana Leaf Tissue: A Primer for Subcellular Metabolomics. In: Arabidopsis Protocols, 3rd Edition, S. 575 - 596. Humana Press, Totowa, NJ (2014)

Ogata, Y.; Sakurai, N.; Provart, N. J.; Steinhauser, D.; Krall, L.: Bioinformatics Tools to Discover Co-Expressed Genes in Plants: Concepts and Protocols. In: The Handbook of Plant Functional Genomics: Concepts and Protocols, 15 (Hg. Kahl, G.; Meksem, K.). Wiley (2008)

Steinhauser, D.; Krall, L.; Müssig, C.; Büssis, D.; Usadel, B.: Correlation Networks. In: Analysis of Biological Networks, 13 (Hg. Junker, B. H.; Schreiber, F.; Zomaya, A. Y.). Wiley (2008)

Steinhauser, D.; Kopka, J.: Methods, applications and concepts of metabolite profiling: primary metabolism. In: Plant Systems Biology, S. 171 - 194 (Hg. Baginsky, S.; Fernie, A. R.). Verlag Birkhäuser, Basel, SUI (2007)

Steinhauser, D.; Usadel, B.: CSB.DB - A Comprehensive Systems-Biology Database: Overview and Transcriptional Co-Response (Correlation) Analysis. In: Plant Genomics and Bioinformatics Expression Micro Arrays and Beyond - a course book, S. 190 - 192 (Hg. Freitag, J.). MPI-MP, Potsdam-Golm (2006)

Desbrosses, G.; Steinhauser, D.; Kopka, J.; Udvardi, M. K.: Lotus metabolome analysis using GC-MS. In: Lotus japonicus handbook, S. 165 - 174 (Hg. Marquez, A. J.; Stougaard, J.; Udvardi, M.; Parniske, M.; Spaink, H. P. et al.). Kluwer, Dordrecht (2005)

Araujo, W. L.; Trofimova, L.; Yu, K.; Steinhauser, D.; Krall, L.; Fernie, A. R.; Bunik, V. I.: On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in the amino acid metabolism. Amino Acids 41, S. S39 - S39 (2011)

Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Bd. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, 26. September 2007 - 28. September 2007. (2007)

Kopka, J.; Steinhauser, D.: Cellular inventory: A joint initiative of the comprehensive systems-biology database [CSB. DB], the Golm Metabolite Database [GMD] and MapMan. (2005)

Kueger, S.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P.: High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions. The Plant Journal 70 (1), S. 39 - 50 (2012)

Usadel, B.; Obayashi, T.; Mutwil, M.; Giorgi, F. M.; Bassel, G. W.; Tanimoto, M.; Chow, A.; Steinhauser, D.; Persson, S.; Provart, N. J.: Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell and Environment 32 (12), S. 1633 - 1651 (2009)

Usadel, B.; Nagel, A.; Steinhauser, D.; Gibon, Y.; Blaesing, O. E.; Redestig, H.; Sreenivasulu, N.; Krall, L.; Hannah, M. A.; Poree, F. et al.; Fernie, A. R.; Stitt, M.: PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, S. 535 (2006)

Usadel, B.; Nagel, A.; Thimm, O.; Redestig, H.; Bläsing, O. E.; Palacios-Rojas, N.; Selbig, J.; Hannemann, J.; Piques, M. C.; Steinhauser, D. et al.; Scheible, W.-R.; Gibon, Y.; Morcuende, R.; Weicht, D.; Meyer, S.; Stitt, M.: Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138 (3), S. 1195 - 1204 (2005)