Vicente, R.; Pérez, P.; Martínez-Carrasco, R.; Feil, R.; Lunn, J. E.; Watanabe, M.; Arrivault, S.; Stitt, M.; Hoefgen, R.; Morcuende, R.: Metabolic and Transcriptional Analysis of Durum Wheat Responses to Elevated CO2 at Low and High Nitrate Supply. Plant Cell Physiology 57 (10), S. 2133 - 2146 (2016)

Bielecka, M.; Watanabe, M.; Morcuende, R.; Scheible, W.-R.; Hawkesford, M. J.; Hesse, H.; Hoefgen, R.: Transcriptome and metabolome analysis of plant sulphate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulphur, nitrogen and phosphorus nutritional responses in Arabidopsis. Frontiers in Plant Science 5, 805 (2015)

Hubberten, H. M.; Sieh, D.; Zoeller, D.; Hoefgen, R.; Krajinski, F.: Medicago truncatula Mtha1-2 mutants loose metabolic responses to mycorrhizal colonization. Plant Signaling & Behavior 10 (6), e989025 (2015)

Zuchi, S.; Watanabe, M.; Hubberten, H. M.; Bromke, M. A.; Osorio, S.; Fernie, A. R.; Celletti, S.; Paolacci, A. R.; Catarcione, G.; Ciaffi, M. et al.; Hoefgen, R.; Astolfi, S.: The Interplay between Sulfur and Iron Nutrition in Tomato. Plant Physiology 169 (4), S. 2624 - 2639 (2015)

Weits, D. A.; Giuntoli, B.; Kosmacz, M.; Parlanti, S.; Hubberten, H. M.; Riegler, H.; Hoefgen, R.; Perata, P.; van Dongen, J. T.; Licausi, F.: Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway. Nature Communications 5, 3425 (2014)

Schmidt, R.; Schippers, J. H. M.; Mieulet, D.; Watanabe, M.; Hoefgen, R.; Guiderdoni, E.; Mueller-Roeber, B.: SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice. Molecular Plant 7 (2), S. 404 - 421 (2014)

Weissgerber, T.; Watanabe, M.; Hoefgen, R.; Dahl, C.: Metabolomic profiling of the purple sulfur bacterium Allochromatium vinosum during growth on different reduced sulfur compounds and malate. Metabolomics (10), S. 1094 - 1112 (2014)

Schmidt, R.; Mieulet, D.; Hubberten, H. M.; Obata, T.; Hoefgen, R.; Fernie, A. R.; Fisahn, J.; Segundo, B. S.; Guiderdoni, E.; Schippers, J. H. M. et al.; Mueller-Roeber, B.: SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species-Dependent Signaling during the Initial Response to Salt Stress in Rice. The Plant Cell 25 (6), S. 2115 - 2131 (2013)

Bromke, M. A.; Hoefgen, R.; Hesse, H.: Phylogenetic aspects of the sulfate assimilation genes from Thalassiosira pseudonana. Amino Acids 44 (5), S. 1253 - 1265 (2013)

Sieh, D.; Watanabe, M.; Devers, E. A.; Brueckner, F.; Hoefgen, R.; Krajinski, F.: The arbuscular mycorrhizal symbiosis influences sulfur starvation responses of Medicago truncatula. New Phytologist 197 (2), S. 606 - 616 (2013)

Tahir, J.; Watanabe, M.; Jing, H. C.; Hunter, D. A.; Tohge, T.; Nunes-Nesi, A.; Brotman, Y.; Fernie, A. R.; Hoefgen, R.; Dijkwel, P. P.: Activation of R-mediated innate immunity and disease susceptibility is affected by mutations in a cytosolic O-acetylserine (thiol) lyase in Arabidopsis. The Plant Journal 73 (1), S. 118 - 130 (2013)

Tohge, T.; Watanabe, M.; Hoefgen, R.; Fernie, A. R.: Shikimate and phenylalanine biosynthesis in the green lineage. Frontiers in Plant Science 4, S. 62 (2013)

Tohge, T.; Watanabe, M.; Hoefgen, R.; Fernie, A. R.: The evolution of phenylpropanoid metabolism in the green lineage. Critical Reviews in Biochemistry and Molecular Biology 48 (2), S. 123 - 152 (2013)

Watanabe, M.; Balazadeh, S.; Tohge, T.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162 (3), S. 1290 - 1310 (2013)

Hubberten, H. M.; Drozd, A.; Tran, B. V.; Hesse, H.; Hoefgen, R.: Local and systemic regulation of sulfur homeostasis in roots of Arabidopsis thaliana. Plant Journal 72 (4), S. 625 - 635 (2012)

Hubberten, H.-M.; Klie, S.; Caldana, C.; Degenkolbe, T.; Willmitzer, L.; Hoefgen, R.: An additional role of O-acetylserine as a sulphur status independent regulator during plant growth. Plant Journal 70 (4), S. 666 - 677 (2012)

Nguyen, H. C.; Hoefgen, R.; Hesse, H.: Improving the nutritive value of rice seeds: elevation of cysteine and methionine contents in rice plants by ectopic expression of a bacterial serine acetyltransferase. Journal of Experimental Botany 63 (16), S. 5991 - 6001 (2012)

Stuttmann, J.; Hubberten, H.-M.; Rietz, S.; Kaur, J.; Muskett, P.; Guerois, R.; Bednarek, P.; Hoefgen, R.; Parker, J. E.: Perturbation of Arabidopsis Amino Acid Metabolism Causes Incompatibility with the Adapted Biotrophic Pathogen Hyaloperonospora arabidopsidis. Plant Cell 23 (7), S. 2788 - 2803 (2011)

Astolfi, S.; Zuchi, S.; Hubberten, H.-M.; Pinton, R.; Hoefgen, R.: Supply of sulphur to S-deficient young barley seedlings restores their capability to cope with iron shortage. Journal of Experimental Botany 61 (3), S. 799 - 806 (2010)

Girin, T.; El-Kafafi, E. S.; Widiez, T.; Erban, A.; Hubberten, H.-M.; Kopka, J.; Hoefgen, R.; Gojon, A.; Lepetit, M.: Identification of Arabidopsis Mutants Impaired in the Systemic Regulation of Root Nitrate Uptake by the Nitrogen Status of the Plant. Plant Physiology 153 (3), S. 1250 - 1260 (2010)

Krueger, S.; Donath, A.; Lopez-Martin, M. C.; Hoefgen, R.; Gotor, C.; Hesse, H.: Impact of sulfur starvation on cysteine biosynthesis in T-DNA mutants deficient for compartment-specific serine-acetyltransferase. Amino Acids 39 (4), S. 1029 - 1042 (2010)

Watanabe, M.; Hubberten, H.-M.; Saito, K.; Hoefgen, R.: General Regulatory Patterns of Plant Mineral Nutrient Depletion as Revealed by serat Quadruple Mutants Disturbed in Cysteine Synthesis. Molecular Plant 3 (2), S. 438 - 466 (2010)

Wulff-Zottele, C.; Gatzke, N.; Kopka, J.; Orellana, A.; Hoefgen, R.; Fisahn, J.; Hesse, H.: Photosynthesis and metabolism interact during acclimation of Arabidopsis thaliana to high irradiance and sulphur depletion. Plant Cell and Environment 33 (11), S. 1974 - 1988 (2010)

Krueger, S.; Niehl, A.; Martin, M. C.; Steinhauser, D.; Donath, A.; Hildebrandt, T.; Romero, L. C.; Hoefgen, R.; Gotor, C.; Hesse, H.: Analysis of cytosolic and plastidic serine acetyltransferase mutants and subcellular metabolite distributions suggests interplay of the cellular compartments for cysteine biosynthesis in Arabidopsis. Plant Cell and Environment 32 (4), S. 349 - 367 (2009)

Boettcher, C.; Centeno, D.; Freitag, J.; Hoefgen, R.; Koehl, K. I.; Kopka, J.; Kroymann, J.; Matros, A.; Mock, H.-P.; Neumann, S. et al.; Pfalz, M.; von Roepenack-Lahaye, E.; Schauer, N.; Trenkamp, S.; Zurbriggen, M.; Fernie, A. R.: Teaching (and learning from) metabolomics: The 2006 PlantMetaNet ETNA Metabolomics Research School. Physiologia Plantarum 132 (2), S. 136 - 149 (2008)

Falkenberg, B.; Witt, I.; Zanor, M. I.; Steinhauser, D.; Mueller-Roeber, B.; Hesse, H.; Hoefgen, R.: Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. Journal of Experimental Botany 59 (10), S. 2831 - 2846 (2008)

Hoefgen, R.; Nikiforova, V. J.: Metabolomics integrated with transcriptomics: assessing systems response to sulfur-deficiency stress. Physiologia Plantarum 132 (2), S. 190 - 198 (2008)

Rinder, J.; Casazza, A. P.; Hoefgen, R.; Hesse, H.: Regulation of aspartate-derived amino acid homeostasis in potato plants (Solanum tuberosum L.) by expression of E-coli homoserine kinase. Amino Acids 34 (2), S. 213 - 222 (2008)

Stiller, I.; Dancs, G.; Hesse, H.; Hoefgen, R.; Banfalvi, Z.: Improving the nutritive value of tubers: Elevation of cysteine and glutathione contents in the potato cultivar White Lady by marker-free transformation. Journal of Biotechnology 128 (2), S. 335 - 343 (2007)

Szymanski, J.; Bielecka, M.; Carrari, F.; Fernie, A. R.; Hoefgen, R.; Nikiforova, V. J.: On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality. Phytochemistry 68 (16-18), S. 2163 - 2175 (2007)