Publikationen von Zoran Nikoloski
Zeitschriftenartikel (195)
1.
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81 (1), 117 (2024)
The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments. Cellular and Molecular Life Sciences 2.
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82, S. 216 - 224 (2024)
Prediction and integration of metabolite-protein interactions with genome-scale metabolic models. Metabolic Engineering 3.
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14 (1), 2687 (2023)
Widening the landscape of transcriptional regulation of green algal photoprotection. Nature Communications 4.
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13 (1), 5712 (2023)
The unraveling of balanced complexes in metabolic networks. Scientific Reports 5.
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14 (1), 986 (2023)
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 6.
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14, 1140829 (2023)
A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae. Frontiers in Plant Science 7.
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80, S. 184 - 192 (2023)
Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning. Metabolic Engineering 8.
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42, e113595 (2023)
Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory in plants. The EMBO Journal 9.
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14 (1), 7052 (2023)
Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature Communications 10.
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19 (10), e1011549 (2023)
PARROT: Prediction of enzyme abundances using protein-constrained metabolic models. PLoS Computational Biology 11.
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240 (1), S. 426 - 438 (2023)
Predicting plasticity of rosette growth and metabolic fluxes in Arabidopsis thaliana. New Phytologist 12.
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79, S. 97 - 107 (2023)
Optogenetic control of Cdc48 for dynamic metabolic engineering in yeast. Metabolic Engineering 13.
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19 (9), e1011489 (2023)
Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony. PLoS Computational Biology 14.
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13, 14589 (2023)
The effective deficiency of biochemical networks. Scientific Reports 15.
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14 (1), 4781 (2023)
Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale. Nature Communications 16.
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14 (1), 4897 (2023)
Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism. Nature Communications 17.
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19 (7), e1010832 (2023)
Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection. PLoS Computational Biology 18.
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5 (1), lqad008 (2023)
Self- and cross-attention accurately predicts metabolite–protein interactions. NAR: genomics and bioinformatics 19.
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14, 1485 (2023)
Data integration across conditions improves turnover number estimates and metabolic predictions. Nature Communications 20.
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14, 1977 (2023)
Light-independent regulation of algal photoprotection by CO2 availability. Nature Communications 21.
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4, e4 (2023)
Heritability of temperature-mediated flower size plasticity in Arabidopsis thaliana. Quantitative Plant Biology 22.
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Models and molecular mechanisms for trade-offs in the context of metabolism. Molecular Ecology (2023)
23.
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7, 71 (2022)
CUBCO+: prediction of protein complexes based on min-cut network partitioning into biclique spanned subgraphs. Applied Network Science 24.
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25 (11), 105411 (2022)
Temperature-mediated flower size plasticity in Arabidopsis. iScience 25.
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Strategies to identify and dissect trade-offs in plants. Molecular Ecology (2022)
26.
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23 (20), 12087 (2022)
Transcriptomic and Metabolomic Analysis of a Pseudomonas-Resistant versus a Susceptible Arabidopsis Accession. International Journal of Molecular Sciences 27.
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111 (5), S. 1486 - 1500 (2022)
An automated workflow that generates atom mappings for large-scale metabolic models and its application to Arabidopsis thaliana. The Plant Journal 28.
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12 (9), jkac170 (2022)
A comparative analysis of genomic and phenomic predictions of growth-related traits in 3-way coffee hybrids. G3: Genes, Genomes, Genetics 29.
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149 (16), dev201024 (2022)
Topological properties accurately predict cell division events and organization of shoot apical meristem in Arabidopsis thaliana. Development 30.
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20, S. 3963 - 3971 (2022)
Relative flux trade-offs and optimization of metabolic network functionalities. Computational and Structural Biotechnology Journal 31.
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149 (12), dev.200415 (2022)
Fluorescent cytoskeletal markers reveal associations between the actin and microtubule cytoskeleton in rice cells. Development 32.
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8 (13), eabl6962 (2022)
The hidden simplicity of metabolic networks is revealed by multireaction dependencies. Science Advances 33.
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9, uhac072 (2022)
Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits. Horticulture Research