Publications of the Group

Kuhalskaya, A.; Li, X.; Lee, J.; Gonda, I.; von Steimker, J.; Bulut, M.; Karakas, E.; Fisher, J.; Krämer, K.; Rosental, L. et al.; Wijesingha Ahchige, M.; Garbowicz, K.; Klemmer, A.; Ruß, A.-K.; Donath, A.; Cuadros-Inostroza, A.; Boerjan, W.; Tieman, D. M.; Zamir, D.; Klee, H. J.; Alseekh, S.: Genetic architecture of the tomato fruit lipidome. PNAS Nexus 5 (1), pgaf401 (2026)

Wijesingha Ahchige, M.; Fisher, J.; Sokolowska, E.; Lyall, R.; Illing, N.; Skirycz, A.; Zamir, D.; Alseekh, S.; Fernie, A. R.: The variegated canalized-1 tomato mutant is linked to photosystem assembly. Computational and Structural Biotechnology Journal 23, pp. 3967 - 3988 (2024)

Wojciechowska, I.; Mukherjee, T.; Knox-Brown, P.; Hu, X.; Khosla, A.; Subedi, B.; Ahmad, B.; Mathews, G.L.; Panagakis, A.A.; Thompson, K.A. et al.; Peery, S.T.; Szlachetko, J.; Thalhammer, A.; Hincha, D. K.; Skirycz, A.; Schrick, K.: Arabidopsis PROTODERMAL FACTOR2 binds lysophosphatidylcholines and transcriptionally regulates phospholipid metabolism. New Phytologist 244 (4), pp. 1498 - 1518 (2024)

Olivieri, P.; Zupok, A.; Yildiz, T.; Oltmanns, J.; Lehmann, A.; Sokolowska, E.; Skirycz, A.; Schünemann, V.; Leimkühler, S.: TusA influences Fe-S cluster assembly and iron homeostasis in E. coli by reducing the translation efficiency of Fur. Microbiology Spectrum 12 (8), e00556-24 (2024)

Uflewski, M.; Rindfleisch, T.; Korkmaz, K.; Tietz, E.; Mielke, S.; Correa Galvis, V.; Dünschede, B.; Luzarowski, M.; Skirycz, A.; Schwarzländer, M. et al.; Strand, D.; Hertle, A. P.; Schünemann, D.; Walther, D.; Thalhammer, A.; Wolff, M.; Armbruster, U.: The thylakoid proton antiporter KEA3 regulates photosynthesis in response to the chloroplast energy status. Nature Communications 15, 2792 (2024)

Abrar Hasnat, M.; Zupok, A.; Gorka, M.; Iobbi-Nivol, C.; Skirycz, A.; Jourlin-Castelli, C.; Bier, F.; Agarwal, S.; Irefo, E.; Leimkühler, S.: Iron limitation indirectly reduces the Escherichia coli torCAD operon expression by a reduction of molybdenum cofactor availability. Microbiology Spectrum 12 (2), e03480-23 (2024)

Duque-Jaramillo, A.; Ulmer, N.; Alseekh, S.; Bezrukov, I.; Fernie, A. R.; Skirycz, A.; Karasov, T.L.; Weigel, D.: The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240 (5), pp. 1961 - 1975 (2023)

Figueroa, N. E.; Franz, P.; Luzarowski, M.; Martinez-Seidel, F.; Moreno, J.C.; Childs, D.; Ziemblicka, A.; Sampathkumar, A.; Andersen, T. G.; Tsiavaliaris, G. et al.; Kosmacz, M.; Skirycz, A.: Protein interactome of 3’,5’-cyclic adenosine monophosphate reveals its role in regulating the actin cytoskeleton. The Plant Journal 115 (5), pp. 1214 - 1230 (2023)

Luzarowska, U.; Ruß, A.-K.; Joubès, J.; Batsale, M.; Szymański, J.; Thirumalaikumar, V. P.; Luzarowski, M.; Wu, S.; Zhu, F.; Endres, N. et al.; Khedhayir, S.; Schumacher, J.; Jasinska, W.; Xu, K.; Cordoba, S. M. C.; Weil, S.; Skirycz, A.; Fernie, A. R.; Li-Beisson, Y.; Fusari, C. M.; Brotman, Y.: Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana. The Plant Cell 35 (6), pp. 1984 - 2005 (2023)

Perlikowski, D.; Skirycz, A.; Marczak, Ł.; Lechowicz, K.; Augustyniak, A.; Michaelis, Ä.; Arkadiusz, K.; Kosmala, A.: Metabolism of crown tissue is crucial for drought tolerance and recovery after stress cessation in Lolium/Festuca forage grasses. Journal of Experimental Botany 74 (1), pp. 396 - 414 (2023)

Li, X.; Deng, D.; Cataltepe, G.; Román, Á.; Buckley, C.R.; Monte Bello, C.C.; Skirycz, A.; Caldana, C.; Haydon, M.J.: A reactive oxygen species Ca2+ signalling pathway identified from a chemical screen for modifiers of sugar-activated circadian gene expression. New Phytologist 236 (3), pp. 1027 - 1041 (2022)

Palos, K.; Dittrich, A.; Yu, L.; Brock, J.; Railey, C.; Wu, H.; Sokolowska, E.; Skirycz, A.; Hsu, P.; Gregory, B. et al.; Lyons, E.; Beilstein, M.; Nelson, A.: Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae. The Plant Cell 34 (9), pp. 3233 - 3260 (2022)

Tabatabaei, I.; Alseekh, S.; Shahid, M.; Leniak, E.; Wagner, M.; Mahmoudi, H.; Thushar, S.; Fernie, A. R.; Murphy, K. M.; Schmöckel, S. M. et al.; Tester, M.; Mueller-Roeber, B.; Skirycz, A.; Balazadeh, S.: The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9 (1), 323 (2022)

Alseekh, S.; Zhu, F.; Vallarino, J. G.; Sokolowska, E.; Yoshida, T.; Bergmann, S.; Wendenburg, R.; Bolze, A.; Skirycz, A.; Avin-Wittenberg, T. et al.; Fernie, A. R.: Autophagy modulates the metabolism and growth of tomato fruit during development. Horticulture Research 9, uhac129 (2022)

Skirycz, A.; Fernie, A. R.: Past accomplishments and future challenges of the multi-omics characterization of leaf growth. Plant Physiology 189 (2), pp. 473 - 489 (2022)

Kosmacz, M.; Kerber, O.; Gorka, M.; Moreno, J.C.; Maruri-Lopez, I.; Minen, R.; Sampathkumar, A.; Nelson, A.; Skirycz, A.: 2 ',3 '-cAMP treatment mimics the stress molecular response in Arabidopsis thaliana. Plant Physiology 188 (4), pp. 1966 - 1978 (2022)

Perlikowski, D.; Lechowicz, K.; Skirycz, A.; Eckhardt, Ä.; Pawłowicz, I.; Kosmala, A.: The role of triacylglycerol in the protection of cells against lipotoxicity under drought in Lolium multiflorum/Festuca arundinacea introgression forms. Plant and Cell Physiology 63 (3), pp. 353 - 368 (2022)

Skirycz, A.; Caldana, C.; Fernie, A. R.: Regulation of plant primary metabolism - How results from novel technologies are extending our understanding from classical targeted approaches. Critical Reviews in Plant Sciences 41 (1), pp. 32 - 51 (2022)

Mi, J.; Vallarino, J. G.; Petřík, I.; Novák, O.; Correa, S. M.; Kosmacz, M.; Havaux, M.; Rodriguez-Concepcion, M.; Al-Babili, S.; Fernie, A. R. et al.; Skirycz, A.; Moreno, J.C.: A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato. Metabolic Engineering 70, pp. 166 - 180 (2022)

Schlossarek, D.; Luzarowski, M.; Sokolowska, E.; Thirumalaikumar, V. P.; Dengler, L.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Rewiring of the protein–protein–metabolite interactome during the diauxic shift in yeast. Cellular and Molecular Life Sciences 79 (11), 550 (2022)