Publications of Z. Nikoloski
All genres
Journal Article (195)
181.
Journal Article
12, p. 292 (2011)
Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study. BMC Bioinformatics 182.
Journal Article
107 (5), p. 054101 (2011)
Inner Composition Alignment for Inferring Directed Networks from Short Time Series. Physical Review Letters 183.
Journal Article
68 (2), pp. 326 - 336 (2011)
Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns. The Plant Journal 184.
Journal Article
23 (3), pp. 895 - 910 (2011)
PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 185.
Journal Article
104 (1), pp. 1 - 8 (2011)
Complexity of automated gene annotation. Biosystems 186.
Journal Article
2, p. 23 (2011)
Large-scale co-expression approach to dissect secondary cell wall formation across plant species. Frontiers in Plant Science 187.
Journal Article
17, pp. 1 - 18 (2010)
Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 188.
Journal Article
267 (1), pp. 7 - 14 (2010)
Algebraic connectivity may explain the evolution of gene regulatory networks. Journal of Theoretical Biology 189.
Journal Article
26 (18), pp. i582 - i588 (2010)
A novel approach for determining environment-specific protein costs: the case of Arabidopsis thaliana. Bioinformatics 190.
Journal Article
37 (9), p. e66 (2009)
Identification and classification of ncRNA molecules using graph properties. Nucleic Acids Research 191.
Journal Article
4 (10), p. e7441 (2009)
Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli - A Systems Approach. PLoS One 192.
Journal Article
20, pp. 135 - 148 (2008)
Biosynthetic potentials from species-specific metabolic networks. Genome Informatics 193.
Journal Article
20 (2), pp. 172 - 188 (2008)
On modularity clustering. IEEE Transactions on Knowledge and Data Engineering 194.
Journal Article
254 (4), pp. 807 - 816 (2008)
Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology 195.
Journal Article
5251, pp. 99 - 112 (2008)
Hardness and Approximability of the Inverse Scope Problem. Algorithms in Bioinformatics, Wabi 2008 Book Chapter (6)
196.
Book Chapter
Regression-Based Modeling of Complex Plant Traits Based on Metabolomics Data. In: Plant Metabolomics: Methods and Protocols, pp. 321 - 327 (Ed. António, C.). Humana Press, New York (2018)
197.
Book Chapter
1653, pp. 195 - 202. Elsevier, Cambridge, MA (2017)
Genome-scale modeling of photorespiratory pathway manipulation. In: Methods in Molecular Biology, Vol. 198.
Book Chapter
1629, pp. 283 - 295. Springer, heidelberg (2017)
Computational Approaches to Study Gene Regulatory Networks. In: Plant gene Regulatory Networks, Vol. 199.
Book Chapter
Computational Approaches to Dissect and Understand Mechanisms of Adaptation. In: Molecular Mechanisms in Plant Adaptation, pp. 193 - 215. Wiley-Blackwell, Malden (2015)
200.
Book Chapter
The Sequence Reconstruction Problem. In: Discrete and Topological Models in Molecular Biology, pp. 23 - 43 (Eds. Jonoska , N.; Saito, M.). Springer-Verlag, Berlin, Heidelberg (2014)