All Publications

201.

Journal Article

Jia, Z.-C.; Das, D.; Zhang, Y.; Fernie, A. R.; Liu, Y.-G.; Chen, M.; Zhang, J.: Plant serine/arginine-rich proteins: versatile players in RNA processing. Planta 257 (6), 109 (2023)

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202.

Journal Article

Koehl, K. I.; Mulugeta Aneley, G.; Haas, M.: Finding Phenotypic Biomarkers for Drought Tolerance in Solanum tuberosum. Agronomy 13, 1457 (2023)

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203.

Journal Article

López, C. M.; Alseekh, S.; Torralbo, F.; Martinez Rivas, F.J.; Fernie, A. R.; Amil-Ruiz, F.; Alamillo, J. M.: Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean. Journal of Experimental Botany 74 (10), pp. 3203 - 3219 (2023)

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204.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Pérez-Serratosa, M.; Ric-Varas, P.; Sánchez, V. G.; Puche, L. M.; Moyano, L.; Mercado, J. Á.; Alseekh, S.; Caballero, J. L. et al.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol accumulation during ripening. The Plant Journal 114 (3), pp. 683 - 698 (2023)

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205.

Journal Article

Moghe, G.; Kruse, L. H.; Petersen, M.; Scossa, F.; Fernie, A. R.; Gaquerel, E.; D'Auria, J. C.: BAHD Company: The Ever-Expanding Roles of the BAHD Acyltransferase Gene Family in Plants. Annual Review of Plant Biology 74, pp. 165 - 194 (2023)

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206.

Journal Article

Stitz, M.; Kuster, D.; Reinert, M.; Schepetilnikov, M.; Berthet, B.; Reyes-Hernández, J.; Janocha, D.; Artins, A.; Boix, M.; Henriques, R. et al.; Pfeiffer, A.; Lohmann, J.; Gaquerel, E.; Maizel, A.: TOR acts as a metabolic gatekeeper for auxin-dependent lateral root initiation in Arabidopsis thaliana. EMBO Journal 42 (10), e111273 (2023)

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207.

Journal Article

Wijesingha Ahchige, M.; Fernie, A. R.; Alseekh, S.: PANTOTHENATE KINASE4, LOSS OF GDU2, and TRANSPOSON PROTEIN1 affect the canalization of tomato fruit metabolism. Plant Physiology 192 (1), pp. 442 - 468 (2023)

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208.

Journal Article

Zhan, C.; Lei, L.; Guo, H.; Zhou, S.; Xu, C.; Liu, Z.; Wu, Z.; Deng, Y.; Miao, Y.; Han, Y. et al.; Zhang, M.; Li, H.; Huang, S.; Yang, C.; Zhang, F.; Li, Y.; Liu, L.; Liu, X.; Abbas, H.M.K.; Fernie, A. R.; Yuan, M.; Luo, J.: Disease resistance conferred by components of essential chrysanthemum oil and the epigenetic regulation of OsTPS1. Science China Life Sciences 66, pp. 1108 - 1118 (2023)

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209.

Journal Article

Zhang, Y.; Chen, M.; Liu, T.; Qin, K.; Fernie, A. R.: Investigating the dynamics of protein-protein interactions in plants. The Plant Journal 114 (4), pp. 965 - 983 (2023)

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210.

Journal Article

Neri-Silva, R.; Monteiro-Batista, R. D.; Fonseca-Pereira, P. D.; Nunes, M. D.; Viana-Silva, A. L.; Palhares Ribeiro, T.; Pérez-Díaz, J. L.; Medeiros, D.B.; Araújo, W. L.; Fernie, A. R. et al.; Nunes-Nesi, A.: On the Significance of the ADNT1 Carrier in Arabidopsis thaliana under Waterlogging Conditions. Biomolecules 13 (5), 731 (2023)

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211.

Journal Article

Bulut, M.; Alseekh, S.; Fernie, A. R.: Natural variation of respiration-related traits in plants. Plant Physiology 191 (4), pp. 2120 - 2132 (2023)

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212.

Journal Article

Chen, Y.; Wang, Y.; Liang, X.; Zhang, Y.; Fernie, A. R.: Mass spectrometric exploration of phytohormone profiles and signaling networks. Trends in Plant Science 28 (4), pp. 399 - 414 (2023)

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213.

Journal Article

Gago, J.; Nadal, M.; Clemente-Moreno, M. J.; Figueroa, C. M.; Medeiros, D.B.; Cubo-Ribas, N.; Cavieres, L. A.; Gulías, J.; Fernie, A. R.; Flexas, J. et al.; Bravo, L. A.: Nutrient availability regulates Deschampsia antarctica photosynthetic and stress tolerance performance in Antarctica. Journal of Experimental Botany 74, pp. 2620 - 2637 (2023)

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214.

Journal Article

Ghandour, R.; Gao, Y.; Laskowski, J.; Barahimipour, R.; Ruf, S.; Bock, R.; Zoschke, R.: Transgene insertion into the plastid genome alters expression of adjacent native chloroplast genes at the transcriptional and translational levels. Plant Biotechnology Journal 21 (4), pp. 711 - 725 (2023)

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215.

Journal Article

Hong, J.; Rosental, L.; Xu, Y.; Xu, D.; Orf, I.; Wang, W.; Hu, Z.; Su, S.; Bai, S.; Ashraf, M. et al.; Hu, C.; Zhang, C.; Li, Z.; Xu, J.; Liu, Q.; Zhang, H.; Zhang, F.; Luo, Z.; Chen, M.; Chen, X.; Betts, N.; Fernie, A. R.; Liang, W.; Chen, G.; Brotman, Y.; Zhang, D.; Shi, J.: Genetic architecture of seed glycerolipids in Asian cultivated rice. Plant, Cell and Environment 46 (4 - Special Issue: Rice 2050), pp. 1278 - 1294 (2023)

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216.

Journal Article

Lohmann, J.; de Luxán-Hernández, C.; Gao, Y.; Zoschke, R.; Weingartner, M.: Arabidopsis Translation factor eEF1Bγ impacts plant development and associates with heat-induced cytoplasmic foci. Journal of Experimental Botany 74 (8), pp. 2585 - 2602 (2023)

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217.

Journal Article

Machens, F.; Ran, G.; Ruehmkorff, C.; Meyer auf der Heyde, J.; Mueller-Roeber, B.; Hochrein, L.: PhiReX 2.0: A Programmable and Red Light-Regulated CRISPR-dCas9 System for the Activation of Endogenous Genes in Saccharomyces cerevisiae. ACS Synthetic Biology 12 (4), pp. 1046 - 1057 (2023)

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218.

Journal Article

Röhricht, H.; Przybyla-Toscano, J.; Forner, J.; Boussardon, C.; Keech, O.; Rouhier, N.; Meyer, E. H.: Mitochondrial ferredoxin-like is essential for forming complex I-containing supercomplexes in Arabidopsis. Plant Physiology 191 (4), pp. 2170 - 2184 (2023)

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219.

Journal Article

Wendering, P.; Nikoloski, Z.: Toward mechanistic modeling and rational engineering of plant respiration. Plant Physiology 191 (4), pp. 2150 - 2166 (2023)

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220.

Journal Article

Mutwil, M.; Fernie, A. R.: Ancestral Genome Reconstruction for Studies of the Green Lineage. Molecular Plant 16 (4), pp. 657 - 659 (2023)

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221.

Journal Article

Aghajanzadeh, T.A.; Watanabe, M.; Tohge, T.; Hawkesford, M.J.; Fernie, A. R.; Hoefgen, R.; Elzenga, J.T.M.; De Kok, L.J.: Necrotrophic fungal infection affects indolic glucosinolate metabolism in Brassica rapa. Acta Physiologiae Plantarum 45 (5), 64 (2023)

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222.

Journal Article

Aharoni, A.; Goodacre, R.; Fernie, A. R.: Plant and microbial sciences as key drivers in the development of metabolomics research. Proceedings of the National Academy of Sciences of the United States of America 120 (12), e2217383120 (2023)

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223.

Journal Article

Bruinsma, L.; Wenk, S.; Claassens, N.J.; Martins dos Santos, V.A.P.: Paving the way for synthetic C1. Metabolic Engineering 76, pp. 215 - 224 (2023)

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224.

Journal Article

Campana, P.; Nikoloski, Z.: Self- and cross-attention accurately predicts metabolite–protein interactions. NAR: genomics and bioinformatics 5 (1), lqad008 (2023)

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225.

Journal Article

Chen, J.; Zhang, Y.; Yin, H.; Liu, W.; Hu, X.; Li, D.; Lan, C.; Gao, L.; He, Z.; Cui, F. et al.; Fernie, A. R.; Chen, W.: The pathway of melatonin biosynthesis in common wheat (Triticum aestivum). Journal of Pineal Research 74 (2), e12841 (2023)

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226.

Journal Article

Fan, R.; Zhu, C.; Qiu, D.; Mao, G.; Mueller-Roeber, B.; Zeng, J.: Integrated transcriptomic and metabolomic analyses reveal key genes controlling flavonoid biosynthesis in Citrus grandis ‘Tomentosa’ fruits. Plant Physiology and Biochemistry 196, pp. 210 - 221 (2023)

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227.

Journal Article

Guo, H.; Cao, P.; Wang, C.; Lai, J.; Deng, Y.; Li, C.; Hao, Y.; Wu, Z.; Chen, R.; Qiang, Q. et al.; Fernie, A. R.; Yang, J.; Wang, S.: Population analysis reveals the roles of DNA methylation in tomato domestication and metabolic diversity. Science China Life Sciences 66, pp. 1888 - 1902 (2023)

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228.

Journal Article

Martínez-Peña, R.; Vergara-Díaz, O.; Schlereth, A.; Höhne, M.; Morcuende, R.; Nieto-Taladriz, M.T.; Araus, J.L.; Aparicio, N.; Vicente, R.: Analysis of durum wheat photosynthetic organs during grain filling reveals the ear as a water stress-tolerant organ and the peduncle as the largest pool of primary metabolites. Planta 257 (4), 81 (2023)

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229.

Journal Article

Novaković, L.; Yakubov, G.E.; Ma, Y.; Bacic, A.; Blank, K.G.; Sampathkumar, A.; Johnson, K.L.: DEFECTIVE KERNEL1 regulates cellulose synthesis and affects primary cell wall mechanics. Frontiers in Plant Science 14, 1150202 (2023)

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230.

Journal Article

Schada von Borzyskowski, L.; Schulz-Mirbach, H.; Troncoso Castellanos, M.; Severi, F.; Gomez Coronado, P. A.; Paczia, N.; Glatter, T.; Bar-Even, A.; Lindner, S. N.; Erb, T.J.: Implementation of the β-hydroxyaspartate cycle increases growth performance of Pseudomonas putida on the PET monomer ethylene glycol. Metabolic Engineering 76, pp. 97 - 109 (2023)

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231.

Journal Article

Sheng, O.; Yin, Z.; Huang, W.; Chen, M.; Du, M.; Kong, Q.; Fernie, A. R.; Yi, G.; Yan, S.: Metabolic profiling reveals genotype-associated alterations in carotenoid content during banana postharvest ripening. Food Chemistry 403, 134380 (2023)

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232.

Journal Article

Strand, D.; Karcher, D.; Ruf, S.; Schadach, A.; Schöttler, M. A.; Sandoval-Ibanez, O.; Hall, D.; Kramer, D. M.; Bock, R.: Characterization of mutants deficient in N-terminal phosphorylation of the chloroplast ATP synthase subunit β. Plant Physiology 191 (3), pp. 1818 - 1835 (2023)

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233.

Journal Article

Wendering, P.; Arend, M.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Data integration across conditions improves turnover number estimates and metabolic predictions. Nature Communications 14, 1485 (2023)

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234.

Journal Article

Xue, J.-Y.; Li, Z.; Hu, S.-Y.; Kao, S.-M.; Zhao, T.; Wang, J.-Y.; Wang, Y.; Chen, M.; Qiu, Y.; Fan, H.-Y. et al.; Liu, Y.; Shao, Z.-Q.; Van de Peer, Y.: The Saururus chinensis genome provides insights into the evolution of pollination strategies and herbaceousness in magnoliids. The Plant Journal 113 (5), pp. 1021 - 1034 (2023)

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235.

Journal Article

Yang, L.; Zhou, Y.; Wang, S.; Xu, Y.; Ostendorp, S.; Tomkins, M.; Kehr, J.; Morris, R. J.; Kragler, F.: Non-cell-autonomous HSC70.1 chaperone displays homeostatic feed-back regulation by binding its own mRNA. New Phytologist 237 (6), pp. 2404 - 2421 (2023)

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236.

Journal Article

Kleinschmidt, D.; Forner, J.: Plant genetic engineering makes treasure from trash. The Science Breaker 9 (1) (2023)

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237.

Journal Article

Shi, Y.; Zhang, Y.; Sun, Y.; Xie, Z.; Luo, Y.; Long, Q.; Feng, J.; Liu, X.; Wang, B.; He, D. et al.; Ren, J.; Guo, P.; Xing, J.; He, L.; Fernie, A. R.; Chen, W.; Liu, X.; Luo, Y.; Jin, C.; Luo, J.: Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains. Molecular Plant 16 (2), pp. 322 - 336 (2023)

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238.

Journal Article

Almeida, O.A.C.; de Araujo, N.O.; Mulato, A.T.N.; Persinoti, G.F.; Sforça, M.L.; Calderan-Rodrigues, M.J.; Oliveira, J.V.D.C.: Bacterial volatile organic compounds (VOCs) promote growth and induce metabolic changes in rice. Frontiers in Plant Science 13, 1056082 (2023)

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239.

Journal Article

Cerqueira, J. V. A.; Zhu, F.; Mendes, K.; Nunes-Nesi, A.; Martins, S. C. V.; Benedito, V.; Fernie, A. R.; Zsögön, A.: Promoter replacement of ANTHOCYANIN1 induces anthocyanin accumulation and triggers shade avoidance response through developmental, physiological and metabolic reprogramming in tomato. Horticulture Research 10 (2), uhac254 (2023)

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240.

Journal Article

Chen, Y.; Chao, Z.-F.; Jin, M.; Wang, Y.-L.; Li, Y.; Wu, J.-C.; Xiao, Y.; Peng, Y.; Lv, Q.-Y.; Gui, S. et al.; Wang, X.; Han, M.-L.; Fernie, A. R.; Chao, D.-Y.; Yan, J.: A heavy metal transporter gene ZmHMA3a promises safe agricultural production on cadmium-polluted arable land. Journal of Genetics and Genomics 50 (2), p. 130-134 (2023)

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241.

Journal Article

Gui, S.; Martinez Rivas, F.J.; Wen, W.; Meng, M.; Yan, J.; Usadel, B.; Fernie, A. R.: Going broad and deep: sequencing driven insights into plant physiology, evolution and crop domestication. The Plant Journal 113 (3), pp. 446 - 459 (2023)

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242.

Journal Article

Hu, X.; Fernie, A. R.; Yan, J.: Deep learning in regulatory genomics: from identification to design. Current Opinion in Biotechnology 79, 102887 (2023)

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243.

Journal Article

Li, H.; Fernie, A. R.; Yang, X.: Using systems metabolic engineering strategies for high-oil maize breeding. Current Opinion in Biotechnology 79, 102847 (2023)

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244.

Journal Article

Liu, Y.; Nour-Eldin, H.H.; Zhang, L.; Li, Z.; Fernie, A. R.; Ren, M.: Biotechnological detoxification: an unchanging source–sink balance strategy for crop improvement. Trends in Plant Science 28 (2), pp. 135 - 138 (2023)

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245.

Journal Article

Silva, S.F.; Miranda, M.T.; Cunha, C.P.; Domingues-Jr, A.P.; Aricetti, J.A.; Caldana, C.; Machado, E.C.; Ribeiro, R.V.: Metabolic profiling of drought tolerance: Revealing how citrus rootstocks modulate plant metabolism under varying water availability. Environmental and Experimental Botany 206, 105169 (2023)

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246.

Journal Article

Vidal-Meireles, A.; Kuntam, S.; Széles, E.; Tóth, D.; Neupert, J.; Bock, R.; Tóth, S. Z.: The lifetime of the oxygen-evolving complex subunit PSBO depends on light intensity and carbon availability in Chlamydomonas. Plant, Cell and Environment 46 (2), pp. 422 - 439 (2023)

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247.

Journal Article

Wu, M.; Zhang, Q.; Dong, Y.; Wang, Z.; Zhan, W.; Ke, Z.; Li, S.; He, L.; Ruf, S.; Bock, R. et al.; Zhang, J.: Transplastomic tomatoes expressing double-stranded RNA against a conserved gene are efficiently protected from multiple spider mites. New Phytologist 237 (4), pp. 1363 - 1373 (2023)

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248.

Journal Article

Xu, W.; Sato, H.; Bente, H.; Santos-González, J.; Köhler, C.: Endosperm cellularization failure induces a dehydration stress response leading to embryo arrest. The Plant Cell 35 (2), pp. 874 - 888 (2023)

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249.

Journal Article

Yi, J.; Kradolfer, D.; Brownfield, L.; Ma, Y.; Piskorz, E.; Köhler, C.; Jiang, H.: Meiocyte size is a determining factor for unreduced gamete formation in Arabidopsis thaliana. New Phytologist 237 (4), pp. 1179 - 1187 (2023)

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250.

Journal Article

Yin, Z.; Huang, W.; Fernie, A. R.; Yan, S.: Mass spectrometry imaging techniques: a versatile toolbox for plant metabolomics. Trends in Plant Science 28 (2), pp. 250 - 251 (2023)

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Journal Article (4089)