All Publications

Journal Article (2161)

  1. 1.
    Annunziata, M. G.; Ciarmiello, L.; Woodrow, P.; Maximova, E.; Fuggi, A.; Carillo, P.: Durum wheat roots adapt to salinity remodelling the cellular content of nitrogen metabolites and sucrose. Frontiers in Plant Science 7, 2035 (2017)
  2. 2.
    Arrivault, S.; Obata, T.; Szecówka, M.; Mengin, V.; Guenther, M.; Höhne, M.; Fernie, A. R.; Stitt, M.: Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation. Journal of Experimental Botany 68, pp. 283 - 298 (2017)
  3. 3.
    Becker, S.; Scheffel, A.; Polz, M. F.; Hehemann, J.-H.: Accurate quantification of laminarin in marine organic matter with enzymes from marine microbes. Applied and Environmental Microbiology (2017)
  4. 4.
    Bolt, S.; Zuther, E.; Zintl, S.; Hincha, D. K.; Schmülling, T.: ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation. Plant, Cell and Environment 40 (1), pp. 108 - 120 (2017)
  5. 5.
    Borghi, M.; Fernie, A. R.; Schiestl, F. P.; Bouwmeester, H. J.: The Sexual Advantage of Looking, Smelling, and Tasting Good: The Metabolic Network that Produces Signals for Pollinators. Trends in Plant Science (2017)
  6. 6.
    Bozek, K.; Khrameeva, E. E.; Reznick, J.; Omerbašić, D.; Bennett, N. C.; Lewin, G. R.; Azpurua, J.; Gorbunova, V.; Seluanov, A.; Regnard, P. et al.; Wanert, F.; Marchal, J.; Pifferi, F.; Aujard, F.; Liu, Z.; Shi, P.; Pääbo, S.; Schröder, F.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Lipidome determinants of maximal lifespan in mammals. Scientific Reports (2017)
  7. 7.
    Bremer, A.; Wolff, M.; Thalhammer, A.; Hincha, D. K.: Folding of intrinsically disordered plant LEA proteins is driven by glycerol-induced crowding and the presence of membranes. The FEBS Journal (2017)
  8. 8.
    Eisenhut, M.; Bräutigam, A.; Timm, S.; Florian, A.; Tohge, T.; Fernie, A. R.; Bauwe, H.; Weber, A. P.M.: Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered \CO2\ availability. Molecular Plant 10 (1), pp. 47 - 61 (2017)
  9. 9.
    Erb, T. J.; Jones, P. R.; Bar-Even, A.: Synthetic metabolism: metabolic engineering meets enzyme design. Current Opinion in Chemical Biology 37, pp. 56 - 62 (2017)
  10. 10.
    Geigenberger, P.; Thormählen, I.; Daloso, D. M.; Fernie, A. R.: The Unprecedented Versatility of the Plant‎ Thioredoxin System. Trends in Plant Science (2017)
  11. 11.
    Glaubitz, U.; Li, X.; Schaedel, S.; Erban, A.; Sulpice, R.; Kopka, J.; Hincha, D. K.; Zuther, E.: Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles. Plant, Cell and Environment 40 (1), pp. 121 - 137 (2017)
  12. 12.
    Guan, D.; Yan, B.; Thieme, C. J.; Hua, J.; Zhu, H.; Boheler, K. R.; Zhao, Z.; Kragler, F.; Xia, Y.; Zhang, S.: PlaMoM: a comprehensive database compiles plant mobile macromolecules. Nucleic Acids Research (2017)
  13. 13.
    Hochrein, L.; Machens, F.; Gremmels, J.; Schulz, K.; Messerschmidt, K.; Mueller-Roeber, B.: AssemblX: a user-friendly toolkit for rapid and reliable multi-gene assemblies. Nucleic Acids Research (2017)
  14. 14.
    Jin, M.; Zhang, X.; Zhao, M.; Deng, M.; Du, Y.; Zhou, Y.; Wang, S.; Tohge, T.; Fernie, A. R.; Willmitzer, L. et al.; Brotman, Y.; Yan, J.; Weiwei, W.: Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis. BMC Plant Biology 17 (1), 17 (2017)
  15. 15.
    Kopka, J.; Schmidt, S.; Dethloff, F.; Pade, N.; Berendt, S.; Schottkowski, M.; Martin, N.; Dühring, U.; Kuchmina, E.; Enke, H. et al.; Kramer, D.; Wilde, A.; Hagemann, M.; Friedrich, A.: Systems analysis of ethanol production in the genetically engineered cyanobacterium Synechococcus sp. PCC 7002. Biotechnology for Biofuels 10, 56 (2017)
  16. 16.
    Korkuc, P.; Walther, D.: Towards understanding the crosstalk between protein post-translational modifications: Homo- and heterotypic PTM pair distances on protein surfaces are not random. Proteins: Structure, Function, and Bioinformatics 85 (1), pp. 78 - 92 (2017)
  17. 17.
    Lah, L.; Löber, U.; Hsiang, T.; Hartmann, S.: A genomic comparison of putative pathogenicity-related gene families in five members of the Ophiostomatales with different lifestyles. Fungal Biology 121 (3), pp. 234 - 252 (2017)
  18. 18.
    Li, Q.; Bozek, K.; Xu, C.; Guo, Y.; Sun, J.; Pääbo, S.; Sherwood, C. C.; Hof, P. R.; Ely, J. J.; Li, Y. et al.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Changes in lipidome composition during brain development in humans, chimpanzees, and macaque monkeys. Molecular Biology and Evolution (accepted)
  19. 19.
    Liu, M.-Y.; Burgos, A.; Zhang, Q.; Tang, D.; Shi, Y.; Ma, L.; Yi, X.; Ruan, J.: Analyses of transcriptome profiles and selected metabolites unravel the metabolic response to NH4+ and NO3− as signaling molecules in tea plant (Camellia sinensis L.). Scientia Horticulturae 218, pp. 293 - 303 (2017)
  20. 20.
    Lo Presti, L.; Zechmann, B.; Kumlehn, J.; Liang, L.; Lanver, D.; Tanaka, S.; Bock, R.; Kahmann, R.: An assay for entry of secreted fungal effectors into plant cells. New Phytologist 213 (2), pp. 956 - 964 (2017)
  21. 21.
    Malinova, I.; Alseekh, S.; Feil, R.; Fernie, A. R.; Baumann, O.; Schöttler, M. A.; Lunn, J. E.; Fettke, J.: Starch synthase 4 and plastidal phosphorylase differentially affect starch granule number and morphology. Plant Physiology (2017)
  22. 22.
    Modde, K.; Timm, S.; Florian, A.; Michl, K.; Fernie, A. R.; Bauwe, a. H.: High serine:glyoxylate aminotransferase activity lowers leaf daytime serine levels, inducing the phosphoserine pathway in Arabidopsis. Journal of Experimental Botany 68 (3), pp. 643 - 656 (2017)
  23. 23.
    Poplawski, P.; Tohge, T.; Boguslawska, J.; Rybicka, B.; Tanski, Z.; Trevino, V.; Fernie, A. R.; Piekielko-Witkowska, A.: Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1863 (3), pp. 744 - 752 (2017)
  24. 24.
    Romero-Munar, A.; Del-Saz, N. F.; Ribas-Carbó, M.; Flexas, J.; Baraza, E.; Florez-Sarasa, I. D.; Fernie, A. R.; Gulías, J.: Arbuscular mycorrhizal symbiosis with Arundo donax decreases root respiration and increases both photosynthesis and plant biomass accumulation. Plant Cell Environment (2017)
  25. 25.
    Ruprecht, C.; Proost, S.; Hernandez-Coronado, M.; Ortiz-Ramirez, C.; Lang, D.; Rensing, S. A.; Becker, J. D.; Vandepoele, K.; Mutwil, M.: Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. The Plant Journal (accepted)
  26. 26.
    Santelia, D.; Lunn, J. E.: Transitory starch metabolism in guard cells: unique features for a unique function. Plant Physiology (2017)
  27. 27.
    Schöttler, M. A.; Thiele, W.; Belkius, K.; Bergner, S.V.; Flügel, C.; Wittenberg, G.; Agrawal, S.; Stegemann, S.; Ruf, S.; Bock, R.: The plastid-encoded PsaI subunit stabilizes photosystem I during leaf senescence in tobacco. Journal of Experimental Botany (2017)
  28. 28.
    Shahnejat-Bushehri, S.; Allu, A. D.; Mehterov, N.; Thirumalaikumar, V. P.; Alseekh, S.; Fernie, A. R.; Mueller-Roeber, B.; Balazadeh, S.: Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Frontiers in Plant Science (2017)
  29. 29.
    Shubchynskyy, V.; Boniecka, J.; Schweighofer, A.; Simulis, J.; Kvederaviciute, K.; Stumpe, M.; Mauch, F.; Balazadeh, S.; Mueller-Roeber, B.; Boutrot, F. et al.; Zipfel, C.; Meskiene, I.: Protein phosphatase AP2C1 negatively regulates basal resistance and defense responses to Pseudomonas syringae. Journal of Experimental Botany (2017)
  30. 30.
    Shumbe, L.; D'Alessandro, S.; Shao, N.; Chevalier, A.; Ksas, B.; Bock, R.; Havaux, M.: METHYLENE BLUE SENSITIVITY 1 (MBS1) is required for acclimation of Arabidopsis to singlet oxygen and acts downstream of β-cyclocitral. Plant Cell Environment 40 (2), pp. 216 - 226 (2017)
  31. 31.
    Sklodowski, K.; Riedelsberger, J.; Raddatz, N.; Riadi, G.; Caballero, J.; Chérel, I.; Schulze, W. X.; Graf, A.; Dreyer, I.: The receptor-like pseudokinase MRH1 interacts with the voltage-gated potassium channel AKT2. Scientific Reports 7, 44611 (2017)
  32. 32.
    Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Arabidopsis fructokinases are important for seed oil accumulation and vascular development. Frontiers in Plant Science 7, 2047 (2017)
  33. 33.
    Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Corrigendum: Arabidopsis Fructokinases Are Important for Seed Oil Accumulation and Vascular Development. Frontiers in Plant Science 8, 303 (2017)
  34. 34.
    Strand, D.; Livingston, A.; Satoh-Cruz, M.; Koepke, T.; Enlow, H.; Fisher, N.; Froehlich, J.; Cruz, J.; Minhas, D.; Hixson, K. et al.; Kohzuma, K.; Lipton, M.; Dhingra, A.; Kramer, D.: Defects in the Expression of Chloroplast Proteins Leads to H2O2 Accumulation and Activation of Cyclic Electron Flow around Photosystem I. Frontiers in Plant Science 7, 2073 (2017)
  35. 35.
    Svetaz, L. A.; Bustamante, C. A.; Goldy, C.; Rivero, N.; Müller, G. L.; Valentini, G. H.; Fernie, A. R.; Drincovich, M. F.; Lara, M. V.: Unraveling early events in the Taphrina deformans – Prunus persica interaction: an insight into the differential responses in resistant and susceptible genotypes. Plant, Cell and Environment (accepted)
  36. 36.
    Swiadek, M.; Proost, S.; Sieh, D.; Yu, J.; Todesco, M.; Jorzig, C.; Cubillos, A.; Plötner, B.; Nikoloski, Z.; Chae, E. et al.; Giavalisco, P.; Fischer, A.; Schröder, F.; Kim, S.-T.; Weigel, D.; Laitinen, R.: Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213 (2), pp. 900 - 915 (2017)
  37. 37.
    Thormählen, I.; Zupok, A.; Rescher, J.; Leger, J.; Weissenberger, S.; Groysman, J.; Orwat, A.; Chatel-Innocenti, G.; Issakidis-Bourguet, E.; Armbruster, U. et al.; Geigenberger, P.: Thioredoxins Play a Crucial Role in Dynamic Acclimation of Photosynthesis in Fluctuating Light. Molecular Plant (2017)
  38. 38.
    Tohge, T.; Fernie, A. R.: Leveraging Natural Variance towards Enhanced Understanding of Phytochemical Sunscreens. Trends in Plant Science (accepted)
  39. 39.
    Veyel, D.; Kierszniowska, S.; Kosmacz, M.; Sokolowska, E.; Michaelis, A.; Luzarowski, M.; Szlachetko, J.; Willmitzer, L.; Skirycz, A.: System-wide detection of protein-small molecule complexes suggests extensive metabolite regulation in plants. Scientific Reports (2017)
  40. 40.
    Vidal-Meireles, A.; Neupert, J.; Zsigmond, L.; Rosado-Souza, L.; Kovács, L.; Nagy, V.; Galambos, A.; Fernie, A. R.; Bock, R.; Tóth, S. Z.: Regulation of ascorbate biosynthesis in green algae has evolved to enable rapid stress-induced response via the VTC2 gene encoding GDP-l-galactose phosphorylase. New Phytologist (2017)
  41. 41.
    Wittenberg, G.; Järvi, S.; Hojka, M.; Toth, S. Z.; Meyer, E. H.; Aro, E.-M.; Schöttler, M. A.; Bock, R.: Identification and characterization of a stable intermediate in photosystem I assembly in tobacco. The Plant Journal (accepted)
  42. 42.
    Woodrow, P.; Ciarmiello, L.F.; Annunziata, M. G.; Pacifico, S.; Iannuzzi, F.; Mirto, A.; D'Amelia, L.; Dell'Aversana, E.; Piccolella, S.; Fuggi, A. et al.; Carillo, P.: Durum wheat seedling responses to simultaneous high light and salinity involve a fine reconfiguration of amino acids and carbohydrate metabolism. Physiologia Plantarum 159 (3), pp. 290 - 312 (2017)
  43. 43.
    Zhang, W.; Lunn, J. E.; Feil, R.; Wang, Y.; Zhao, J.; Tao, H.; Guo, Y.; Zhao, Z.: Trehalose 6-phosphate signal is closely related to sorbitol in apple (Malus domestica Borkh. Cv. Gala). Biology Open 6 (2), pp. 260 - 268 (2017)
  44. 44.
    de Abreu e Lima, F.; Westhues, M.; Cuadros-Inostroza, Á.; Willmitzer, L.; Melchinger, A. E.; Nikoloski, Z.: Metabolic robustness in young roots underpins a predictive model of maize hybrid performance in the field. The Plant Journal (2017)
  45. 45.
    Aarabi, F.; Kusajima, M.; Tohge, T.; Konishi, T.; Gigolashvili, T.; Takamune, M.; Sasazaki, Y.; Watanabe, M.; Nakashita, H.; Fernie, A. R. et al.; Saito, K.; Takahashi, H.; Hubberten, H. M.; Hoefgen, R.; Maruyama-Nakashita, A.: Sulfur deficiency–induced repressor proteins optimize glucosinolate biosynthesis in plants. Science Advances 2 (10), e1601087 (2016)
  46. 46.
    Addadi, L.; Gal, A.; Faivre, D.; Scheffel, A.; Weiner, S.: Control of Biogenic Nanocrystal Formation in Biomineralization. Israel Journal of Chemistry 56 (4 SI), pp. 227 - 241 (2016)
  47. 47.
    Allu, A. D.; Brotman, Y.; Xue, G.; Balazadeh, S.: Transcription factor ANAC032 modulates JA/SA signalling in response to Pseudomonas syringae infection. EMBO Reports 17 (11), pp. 1499 - 1671 (2016)
  48. 48.
    Antonio, C.; Päpke, C.; Rocha, M.; Diab, H.; Limami, A. M.; Obata, T.; Fernie, A. R.; van Dongen, J.: Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution. Plant Physiolog 170 (1), pp. 43 - 56 (2016)
  49. 49.
    Aranda-Sicilia, M.N.; Aboukila, A.; Armbruster, U.; Cagnac, O.; Schumann, T.; Kunz, H.-H.; Jahns, P.; Rodríguez-Rosales, M.P.; Sze, H.; Venema, K.: Envelope K+/H+ antiporters AtKEA1 and AtKEA2 function in plastid development. Plant Physiology 172 (1), pp. 441 - 449 (2016)
  50. 50.
    Armbruster, U.; Leonelli, L.; Correa Galvis, V.; Strand, D.; Quinn, E.H.; Jonikas, M.C.; Niyogi, K.K.: Regulation and levels of the thylakoid K+/H+ antiporter KEA3 shape the dynamic response of photosynthesis in fluctuating light. Plant and Cell Physiology 57 (7), pp. 1557 - 1567 (2016)
 
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