All Publications

Journal Article (2193)

  1. 1.
    Andersen, U. B.; Kjaer, K. H.; Erban, A.; Alpers, J.; Hincha, D. K.; Kopka, J.; Zuther, E.; Pagter, M.: Impact of seasonal warming on overwintering and spring phenology of blackcurrant. Environmental and Experimental Botany 140, pp. 96 - 109 (2017)
  2. 2.
    Annunziata, M. G.; Ciarmiello, L.; Woodrow, P.; Maximova, E.; Fuggi, A.; Carillo, P.: Durum wheat roots adapt to salinity remodelling the cellular content of nitrogen metabolites and sucrose. Frontiers in Plant Science 7, 2035 (2017)
  3. 3.
    Armbruster, U.; Correa Galvis, V.; Kunz, H.-H.; Strand, D.: The regulation of the chloroplast proton motive force plays a key role for photosynthesis in fluctuating light. Current Opinion in Plant Biology 37, pp. 56 - 62 (2017)
  4. 4.
    Arrivault, S.; Obata, T.; Szecówka, M.; Mengin, V.; Guenther, M.; Höhne, M.; Fernie, A. R.; Stitt, M.: Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation. Journal of Experimental Botany 68, pp. 283 - 298 (2017)
  5. 5.
    Barbash, S.; Garfinkel, B. P.; Maoz, R.; Simchovitz, A.; Nadorp, B.; Guffanti, A.; Bennett, E. R.; Nadeau, C.; Türk, A.; Paul, L. et al.; Reda, T.; Li, Y.; Buchman, A. S.; Greenberg, D. S.; Seitz, A.; Bennett, D. A.; Giavalisco, P.; Soreq, H.: Alzheimer's brains show inter-related changes in \RNA\ and lipid metabolism. Neurobiology of Disease 106, pp. 1 - 13 (2017)
  6. 6.
    Bareither, N.; Scheffel, A.; Metz, J.: Distribution of polyploid plants in the common annual Brachypodium distachyon (s.l.) in Israel is not linearly correlated with aridity. Israel Journal of Plant Sciences (2017)
  7. 7.
    Bayer-Császár, E.; Haag, S.; Jörg, A.; Glass, F.; Härtel, B.; Obata, T.; Meyer, E. H.; Brennicke, A.; Takenaka, M.: The conserved domain in MORF proteins has distinct affinities to the PPR and E elements in PPR RNA editing factors. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1860 (8), pp. 813 - 828 (2017)
  8. 8.
    Becker, S.; Scheffel, A.; Polz, M. F.; Hehemann, J.-H.: Accurate quantification of laminarin in marine organic matter with enzymes from marine microbes. Applied and Environmental Microbiology 89 (9), e03389 (2017)
  9. 9.
    Bledsoe, S. W.; Henry, C.; Griffiths, C. A.; Paul, M. J.; Feil, R.; Lunn, J. E.; Stitt, M.; Lagrimini, L. M.: The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion. BMC Plant Biology (2017)
  10. 10.
    Bolt, S.; Zuther, E.; Zintl, S.; Hincha, D. K.; Schmülling, T.: ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation. Plant, Cell and Environment 40 (1), pp. 108 - 120 (2017)
  11. 11.
    Borghi, M.; Fernie, A. R.; Schiestl, F. P.; Bouwmeester, H. J.: The Sexual Advantage of Looking, Smelling, and Tasting Good: The Metabolic Network that Produces Signals for Pollinators. Trends in Plant Science (2017)
  12. 12.
    Bozek, K.; Khrameeva, E. E.; Reznick, J.; Omerbašić, D.; Bennett, N. C.; Lewin, G. R.; Azpurua, J.; Gorbunova, V.; Seluanov, A.; Regnard, P. et al.; Wanert, F.; Marchal, J.; Pifferi, F.; Aujard, F.; Liu, Z.; Shi, P.; Pääbo, S.; Schröder, F.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Lipidome determinants of maximal lifespan in mammals. Scientific Reports (2017)
  13. 13.
    Bremer, A.; Wolff, M.; Thalhammer, A.; Hincha, D. K.: Folding of intrinsically disordered plant LEA proteins is driven by glycerol-induced crowding and the presence of membranes. The FEBS Journal 284 (6), pp. 919 - 936 (2017)
  14. 14.
    Bucher, R.; Veyel, D.; Willmitzer, L.; Krattinger, S.; Keller, B.; Biglera, L.: Combined GC- and UHPLC-HR-MS Based Metabolomics to Analyze Durable Anti-fungal Resistance Processes in Cereals. Chimia 71 (4), pp. 156 - 159 (2017)
  15. 15.
    Eisenhut, M.; Bräutigam, A.; Timm, S.; Florian, A.; Tohge, T.; Fernie, A. R.; Bauwe, H.; Weber, A. P.M.: Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered \CO2\ availability. Molecular Plant 10 (1), pp. 47 - 61 (2017)
  16. 16.
    Erb, T. J.; Jones, P. R.; Bar-Even, A.: Synthetic metabolism: metabolic engineering meets enzyme design. Current Opinion in Chemical Biology 37, pp. 56 - 62 (2017)
  17. 17.
    Estevez, S.; Nikoloski, Z.: On the effects of alternative optima in context-specific metabolic model predictions. PLoS Computational Biology (2017)
  18. 18.
    Estrada-Johnson, E.; Csukasi, F.; Pizarro, C. M.; Vallarino, J. G.; Kiryakova, Y.; Vioque, A.; Brumos, J.; Medina-Escobar, N.; Botella, M. A.; Alonso, J. M. et al.; Fernie, A. R.; Sanchez-Sevilla, J. F.; Osorio, S.; Valpuesta, V.: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science (2017)
  19. 19.
    Ficarra, F. A.; Grandellis, C.; Galván, E. M.; Ielpi, L.; Feil, R.; Lunn, J. E.; Gottig, N.; Ottado, J.: Xanthomonas citri ssp. citri requires the outer membrane porin OprB for maximal virulence and biofilm formation. Molecular Plant Pathology 18 (5), pp. 720 - 733 (2017)
  20. 20.
    Flores-Tornero, M.; Anoman, A. D.; Rosa-Tellez, S.; Toujani, W.; Weber, A. P. M.; Eisenhut, M.; Kurz, S.; Alseekh, S.; Fernie, A. R.; Munoz-Bertomeu, J. et al.; Ros, R.: Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants. The Plant Journal 89 (6), pp. 1146 - 1158 (2017)
  21. 21.
    Geigenberger, P.; Thormählen, I.; Daloso, D. M.; Fernie, A. R.: The Unprecedented Versatility of the Plant‎ Thioredoxin System. Trends in Plant Science 22 (3), pp. 249 - 262 (2017)
  22. 22.
    Glaubitz, U.; Li, X.; Schaedel, S.; Erban, A.; Sulpice, R.; Kopka, J.; Hincha, D. K.; Zuther, E.: Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles. Plant, Cell and Environment 40 (1), pp. 121 - 137 (2017)
  23. 23.
    Goldy, C.; Svetaz, L. A.; Bustamante, C. A.; Allegrini, M.; Valentini, G. H.; Drincovich, M. F.; Fernie, A. R.; Lara, M. V.: Comparative proteomic and metabolomic studies between Prunus persica genotypes resistant and susceptible to Taphrina deformans suggest a molecular basis of resistance. Plant Physiology and Biochemistry 118, pp. 245 - 255 (2017)
  24. 24.
    Graf, A.; Coman, D.; Uhrig, R.G.; Walsh, S.; Flis, A.; Stitt, M.; Gruissem, W.: Parallel analysis of arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation. Open Biology 7 (3), 160333 (2017)
  25. 25.
    Guan, D.; Yan, B.; Thieme, C. J.; Hua, J.; Zhu, H.; Boheler, K. R.; Zhao, Z.; Kragler, F.; Xia, Y.; Zhang, S.: PlaMoM: a comprehensive database compiles plant mobile macromolecules. Nucleic Acids Research (2017)
  26. 26.
    Hanhart, P.; Thiess, M.; Amari, K.; Bajdzienko, K.; Giavalisco, P.; Heinlein, M.; Kehr, J.: Bioinformatic and expression analysis of the Brassica napus L. cyclophilins. Scientific Reports 7, 1514 (2017)
  27. 27.
    Hochrein, L.; Machens, F.; Gremmels, J.; Schulz, K.; Messerschmidt, K.; Mueller-Roeber, B.: AssemblX: a user-friendly toolkit for rapid and reliable multi-gene assemblies. Nucleic Acids Research (2017)
  28. 28.
    Jin, M.; Zhang, X.; Zhao, M.; Deng, M.; Du, Y.; Zhou, Y.; Wang, S.; Tohge, T.; Fernie, A. R.; Willmitzer, L. et al.; Brotman, Y.; Yan, J.; Weiwei, W.: Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis. BMC Plant Biology 17 (1), 17 (2017)
  29. 29.
    Koehl, K. I.; Tohge, T.; Schöttler, M. A.: Performance of Arabidopsis thaliana under different light qualities: comparison of light-emitting diodes to fluorescent lamp. Functional Plant Biology 44 (7), pp. 727 - 738 (2017)
  30. 30.
    Kopka, J.; Schmidt, S.; Dethloff, F.; Pade, N.; Berendt, S.; Schottkowski, M.; Martin, N.; Dühring, U.; Kuchmina, E.; Enke, H. et al.; Kramer, D.; Wilde, A.; Hagemann, M.; Friedrich, A.: Systems analysis of ethanol production in the genetically engineered cyanobacterium Synechococcus sp. PCC 7002. Biotechnology for Biofuels 10 (1), 56 (2017)
  31. 31.
    Korkuc, P.; Walther, D.: Towards understanding the crosstalk between protein post-translational modifications: Homo- and heterotypic PTM pair distances on protein surfaces are not random. Proteins: Structure, Function, and Bioinformatics 85 (1), pp. 78 - 92 (2017)
  32. 32.
    Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Todaka, D.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants. Plant Biotechnology Journal 15 (4), pp. 458 - 471 (2017)
  33. 33.
    Lah, L.; Löber, U.; Hsiang, T.; Hartmann, S.: A genomic comparison of putative pathogenicity-related gene families in five members of the Ophiostomatales with different lifestyles. Fungal Biology 121 (3), pp. 234 - 252 (2017)
  34. 34.
    Li, Q.; Bozek, K.; Xu, C.; Guo, Y.; Sun, J.; Pääbo, S.; Sherwood, C. C.; Hof, P. R.; Ely, J. J.; Li, Y. et al.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Changes in lipidome composition during brain development in humans, chimpanzees, and macaque monkeys. Molecular Biology and Evolution 34 (5), pp. 1155 - 1166 (2017)
  35. 35.
    Liu, M.-Y.; Burgos, A.; Zhang, Q.; Tang, D.; Shi, Y.; Ma, L.; Yi, X.; Ruan, J.: Analyses of transcriptome profiles and selected metabolites unravel the metabolic response to NH4+ and NO3− as signaling molecules in tea plant (Camellia sinensis L.). Scientia Horticulturae 218, pp. 293 - 303 (2017)
  36. 36.
    Lo Presti, L.; Zechmann, B.; Kumlehn, J.; Liang, L.; Lanver, D.; Tanaka, S.; Bock, R.; Kahmann, R.: An assay for entry of secreted fungal effectors into plant cells. New Phytologist 213 (2), pp. 956 - 964 (2017)
  37. 37.
    Malinova, I.; Alseekh, S.; Feil, R.; Fernie, A. R.; Baumann, O.; Schöttler, M. A.; Lunn, J. E.; Fettke, J.: Starch synthase 4 and plastidal phosphorylase differentially affect starch granule number and morphology. Plant Physiology (2017)
  38. 38.
    Marshall-Colon, A.; Long, S. P.; Allen, D. K.; Allen, G.; Beard, D. A.; Benes, B.; von Caemmerer, S.; Christensen, A. J.; Cox, D. J.; Hart, J. C. et al.; Hirst, P. M.; Kannan, K.; Katz, D. S.; Lynch, J. P.; Millar, A. J.; Panneerselvam, B.; Price, N. D.; Prusinkiewicz, P.; Raila, D.; Shekar, R. G.; Shrivastava, S.; Shukla, D.; Srinivasan, V.; Stitt, M.; Turk, M. J.; Voit, E. O.; Wang, Y.; Yin, X.; Zhu, X.-G.: Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform. Frontiers in Plant Science 8, 786 (2017)
  39. 39.
    Marshall-Colon, A.; Long, S. P.; Allen, D. K.; Allen, G.; Beard, D. A.; Benes, B.; von Caemmerer, S.; Christensen, A. J.; Cox, D. J.; Hart, J. C. et al.; Hirst, P. M.; Kannan, K.; Katz, D. S.; Lynch, J. P.; Millar, A. J.; Panneerselvam, B.; Price, N. D.; Prusinkiewicz, P.; Raila, D.; Shekar, R. G.; Shrivastava, S.; Shukla, D.; Srinivasan, V.; Stitt, M.; Turk, M. J.; Voit, E. O.; Wang, Y.; Yin, X.; Zhu, X.-G.: Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform. Frontiers in Plant Science (2017)
  40. 40.
    Matthijs, M.; Fabris, M.; Obata, T.; Foubert, I.; Franco‐Zorrilla, J. M.; Solano, R.; Fernie, A. R.; Vyverman, W.; Goossens, A.: The transcription factor bZIP14 regulates the TCA cycle in the diatom Phaeodactylum tricornutum. EMBO Journal 36 (8), pp. 959 - 1116 (2017)
  41. 41.
    Modde, K.; Timm, S.; Florian, A.; Michl, K.; Fernie, A. R.; Bauwe, a. H.: High serine:glyoxylate aminotransferase activity lowers leaf daytime serine levels, inducing the phosphoserine pathway in Arabidopsis. Journal of Experimental Botany 68 (3), pp. 643 - 656 (2017)
  42. 42.
    Moreno, J.C.; Tiller, N.; Diez, M.; Karcher, D.; Tillich, M.; Schöttler, M. A.; Bock, R.: Generation and characterization of a collection of knock-down lines for the chloroplast Clp protease complex in tobacco. Journal of Experimental Botany 68 (9), pp. 2199 - 2218 (2017)
  43. 43.
    Ntatsi, G.; Savvas, D.; Papasotiropoulos, V.; Katsileros, A.; Zrenner, R. M.; Hincha, D. K.; Zuther, E.; Schwarz, D.: Rootstock Sub-Optimal Temperature Tolerance Determines Transcriptomic Responses after Long-Term Root Cooling in Rootstocks and Scions of Grafted Tomato Plants. Frontiers in Plant Science 8, 911 (2017)
  44. 44.
    Poplawski, P.; Tohge, T.; Boguslawska, J.; Rybicka, B.; Tanski, Z.; Trevino, V.; Fernie, A. R.; Piekielko-Witkowska, A.: Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1863 (3), pp. 744 - 752 (2017)
  45. 45.
    Rahmoune, B.; Morsli, A.; Khelifi-Slaoui, M.; Khelifi, L.; Strueh, A.; Erban, A.; Kopka, J.; Prell, J.; van Dongen, J. T.: Isolation and characterization of three new PGPR and their effects on the growth of Arabidopsis and Datura plants. Journal of Plant Interaction 12 (1), pp. 1 - 6 (2017)
  46. 46.
    Romero-Munar, A.; Del-Saz, N. F.; Ribas-Carbó, M.; Flexas, J.; Baraza, E.; Florez-Sarasa, I. D.; Fernie, A. R.; Gulías, J.: Arbuscular mycorrhizal symbiosis with Arundo donax decreases root respiration and increases both photosynthesis and plant biomass accumulation. Plant Cell Environment 40 (7), pp. 1115 - 1126 (2017)
  47. 47.
    Ruprecht, C.; Proost, S.; Hernandez-Coronado, M.; Ortiz-Ramirez, C.; Lang, D.; Rensing, S. A.; Becker, J. D.; Vandepoele, K.; Mutwil, M.: Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. The Plant Journal 90 (3), pp. 447 - 465 (2017)
  48. 48.
    Ruprecht, C.; Vaid, N.; Proost, S.; Persson, S.; Mutwil, M.: Beyond Genomics: Studying Evolution with Gene Coexpression Networks. Trends in Plant Science 22 (4), pp. 298 - 307 (2017)
  49. 49.
    Santelia, D.; Lunn, J. E.: Transitory starch metabolism in guard cells: unique features for a unique function. Plant Physiology 174 (2), pp. 539 - 549 (2017)
  50. 50.
    Schöttler, M. A.; Thiele, W.; Belkius, K.; Bergner, S.V.; Flügel, C.; Wittenberg, G.; Agrawal, S.; Stegemann, S.; Ruf, S.; Bock, R.: The plastid-encoded PsaI subunit stabilizes photosystem I during leaf senescence in tobacco. Journal of Experimental Botany 68 (5), pp. 1137 - 1155 (2017)
 
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