Publications of the MPI

51.

Journal Article

Grigston, J. C.; Osuna, D.; Scheible, W.-R.; Liu, C.; Stitt, M.; Jones, A. M.: D-Glucose sensing by a plasma membrane regulator of G signaling protein, AtRGS1. FEBS Letters 582 (25-26), pp. 3577 - 3584 (2008)

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52.

Journal Article

Handorf, T.; Christian, N.; Ebenhoeh, O.; Kahn, D.: An environmental perspective on metabolism. Journal of Theoretical Biology 252 (3), pp. 530 - 537 (2008)

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53.

Journal Article

Hanikenne, M.; Talke, I. N.; Haydon, M. J.; Lanz, C.; Nolte, A.; Motte, P.; Kroymann, J.; Weigel, D.; Kraemer, U.: Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. Nature 453 (7193), pp. 391 - 396 (2008)

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54.

Journal Article

Hartmann, S.; Vision, T. J.: Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment? BMC Evolutionary Biology 8, p. 95 (2008)

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55.

Journal Article

Heazlewood, J. L.; Durek, P.; Hummel, J.; Selbig, J.; Weckwerth, W.; Walther, D.; Schulze, W. X.: PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36 (Database issue), pp. D1015 - D1021 (2008)

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56.

Journal Article

Hincha, D. K.: Effects of alpha-tocopherol (vitamin E) on the stability and lipid dynamics of model membranes mimicking the lipid composition of plant chloroplast membranes. FEBS Letters 582 (25-26), pp. 3687 - 3692 (2008)

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57.

Journal Article

Hincha, D. K.; Rennecke, P.; Oliver, A. E.: Protection of liposomes against fusion during drying by oligosaccharides is not predicted by the calorimetric glass transition temperatures of the dry sugars. European Biophysics Journal with Biophysics Letters 37 (4), pp. 503 - 508 (2008)

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58.

Journal Article

Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), pp. 4214 - 4225 (2008)

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59.

Journal Article

Huang, C. Y.; Roessner, U.; Eickmeier , I.; Genc, Y.; Callahan, D. L.; Shirley, N.; Langridge, P.; Bacic, A.: Metabolite profiling reveals distinct changes in carbon and nitrogen metabolism in phosphate-deficient barley plants (Hordeum vulgare L.). Plant and Cell Physiology 49 (5), pp. 691 - 703 (2008)

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60.

Journal Article

Hufton, A. L.; Groth, D.; Vingron, M.; Lehrach, H.; Poustka, A. J.; Panopoulou, G.: Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Research 18 (10), pp. 1582 - 1591 (2008)

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61.

Journal Article

Jensen, J. K.; Sorensen, S. O.; Harholt, J.; Geshi, N.; Sakuragi, Y.; Moller, I.; Zandleven, J.; Bernal, A. J.; Jensen, N. B.; Sorensen, C. et al.; Pauly, M.; Beldman, G.; Willats, W. G. T.; Scheller, H. V.: Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis. Plant Cell 20 (5), pp. 1289 - 1302 (2008)

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62.

Journal Article

Jones, P.; Côté, R. G.; Cho, S. Y.; Klie, S.; Martens, L.; Quinn, A. F.; Thorneycroft, D.; Hermjakob, H.: PRIDE: new developments and new datasets. Nucleic Acids Research (London) 36 (Database issue), pp. D878 - D883 (2008)

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63.

Journal Article

Kakar, K.; Wandrey, M.; Czechowski, T.; Gaertner, T.; Scheible, W.-R.; Stitt, M.; Torres-Jerez, I.; Xiao, Y.; Redman, J. C.; Wu, H. C. et al.; Cheung, F.; Town, C. D.; Udvardi, M. K.: A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods 4, p. 18 (2008)

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64.

Journal Article

Karcher, D.; Kahlau, S.; Bock, R.: Faithful editing of a tomato-specific mRNA editing site in transgenic tobacco chloroplasts. RNA-A Publication of the RNA Society 14 (2), pp. 217 - 224 (2008)

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65.

Journal Article

Kempa, S.; Krasensky, J.; Dal Santo, S.; Kopka, J.; Jonak, C.: A Central Role of Abscisic Acid in Stress-Regulated Carbohydrate Metabolism. PLoS One 3 (12), p. e3935 (2008)

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66.

Journal Article

Kersten, B.; Nagel, A.; Riano-Pachon, D.M.; Neigenfind, J.; Weber, E.; Wagner, R.; Diehl, S.: Die GABI-Primaerdatenbank GabiPD - Komplexe Integration von GABI-Daten aus Modell- und Nutzpflanzen. GenomXPress: Informationen aus der Deutschen Genomforschung 1, pp. 17 - 19 (2008)

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67.

Journal Article

Keurentjes, J. J. B.; Sulpice, R.; Gibon, Y.; Steinhauser, M.-C.; Fu, J. Y.; Koornneef, M.; Stitt, M.; Vreugdenhil, D.: Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biology 9 (8), p. R129 (2008)

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68.

Journal Article

Kloosterman, B.; De Koeyer, D.; Griffiths, R.; Flinn, B.; Steuernagel, B.; Scholz, U.; Sonnewald, S.; Sonnewald, U.; Bryan, G. J.; Prat, S. et al.; Banfalvi, Z.; Hammond, J. P.; Geigenberger, P.; Nielsen, K. L.; Visser, R. G. F.; Bachem, C. W. B.: Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Functional & Integrative Genomics 8 (4), pp. 329 - 340 (2008)

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69.

Journal Article

Koehl, K. I.; Basler, G.; Lüdemann, A.; Selbig, J.; Walther, D.: A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 4, p. 11 (2008)

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70.

Journal Article

Korn, M.; Peterek, S.; Mock, H.-P.; Heyer, A. G.; Hincha, D. K.: Heterosis in the freezing tolerance, and sugar and flavonoid contents of crosses between Arabidopsis thaliana accessions of widely varying freezing tolerance. Plant, Cell and Environment 31 (6), pp. 813 - 827 (2008)

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71.

Journal Article

Koslowsky, S.; Riegler, H.; Bergmueller, E.; Zrenner, R.: Higher biomass accumulation by increasing phosphoribosylpyrophosphate synthetase activity in Arabidopsis thaliana and Nicotiana tabacum. Plant Biotechnology Journal 6 (3), pp. 281 - 294 (2008)

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72.

Journal Article

Kruse, K.; Ebenhoeh, O.: Comparing flux balance analysis to network expansion: producibility, sustainability and the scope of compounds. Genome Informatics 20, pp. 91 - 101 (2008)

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73.

Journal Article

Kryvych, S.; Nikiforova, V.; Herzog, M.; Perazza, D.; Fisahn, J.: Gene expression profiling of the different stages of Arabidopsis thaliana trichome development on the single cell level. Plant Physiology and Biochemistry 46 (2), pp. 160 - 173 (2008)

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74.

Journal Article

Laitinen, R. A.; Ainasoja, M.; Broholm, S. K.; Teeri, T. H.; Elomaa, P.: Identification of target genes for a MYB-type anthocyanin regulator in Gerbera hybrida. Journal of Experimental Botany 59 (13), pp. 3691 - 3703 (2008)

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75.

Journal Article

Lange, P. R.; Geserick, C.; Tischendorf, G.; Zrenner, R.: Functions of chloroplastic adenylate kinases in Arabidopsis. Plant Physiology 146 (2), pp. 492 - 504 (2008)

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76.

Journal Article

Le, M. Q.; Engelsberger, W. R.; Hincha, D. K.: Natural genetic variation in acclimation capacity at sub-zero temperatures after cold acclimation at 4 degrees C in different Arabidopsis thaliana accessions. Cryobiology 57 (2), pp. 104 - 112 (2008)

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77.

Journal Article

Leboeuf, E.; Immerzeel, P.; Gibon, Y.; Steup, M.; Pauly, M.: High-throughput functional assessment of polysaccharide-active enzymes using matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry as exemplified on plant cell wall polysaccharides. Analytical Biochemistry 373 (1), pp. 9 - 17 (2008)

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78.

Journal Article

Lehmann, U.; Wienkoop, S.; Tschoep, H.; Weckwerth, W.: If the antibody fails - a mass Western approach. The Plant Journal 55 (6), pp. 1039 - 1046 (2008)

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79.

Journal Article

Lein, W.; Usadel, B.; Stitt, M.; Reindl, A.; Ehrhardt, T.; Sonnewald, U.; Boernke, F.: Large-scale phenotyping of transgenic tobacco plants (Nicotiana tabacum) to identify essential leaf functions. Plant Biotechnology Journal 6 (3), pp. 246 - 263 (2008)

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80.

Journal Article

Lejay, L.; Wirth, J.; Pervent, M.; Cross, J. M. F.; Tillard, P.; Gojon, A.: Oxidative pentose phosphate pathway-dependent sugar sensing as a mechanism for regulation of root ion transporters by photosynthesis. Plant Physiology 146 (4), pp. 2036 - 2053 (2008)

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81.

Journal Article

Levine, L. H.; Kasahara, H.; Kopka, J.; Erban, A.; Fehrle, I.; Kaplan, F.; Zhao, W.; Littell, R. C.; Guy, C.; Wheeler, R. et al.; Sager, J.; Mills, A.; Levine, H. G.: Physiologic and metabolic responses of wheat seedlings to elevated and super-elevated carbon dioxide. Advances in Space Research 42 (12), pp. 1917 - 1928 (2008)

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82.

Journal Article

Lieckfeldt, E.; Simon-Rosin, U.; Kose, F.; Zoeller, D.; Schliep, M.; Fisahn, J.: Gene expression profiling of single epidermal, basal and trichome cells of Arabidopsis thaliana. Journal of Plant Physiology 165 (14), pp. 1530 - 1544 (2008)

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83.

Journal Article

Lisec, J.; Meyer, R. C.; Steinfath, M.; Redestig, H.; Becher, M.; Witucka-Wall, H.; Fiehn, O.; Torjek, O.; Selbig, J.; Altmann, T. et al.; Willmitzer, L.: Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant Journal 53 (6), pp. 960 - 972 (2008)

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84.

Journal Article

Lodha, M.; Schulz-Raffelt, M.; Schroda, M.: A new assay for promoter analysis in Chlamydomonas reveals roles for heat shock elements and the TATA box in HSP70A promoter-mediated activation of transgene expression. Eukaryotic Cell 7 (1), pp. 172 - 176 (2008)

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85.

Journal Article

Lohse, M.; Krueger, P.; Hannemann, J.; Nagel, A.; Stitt, M.; Walther, D.; Usadel, B.: Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, pp. 16 - 17 (2008)

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86.

Journal Article

Lüdemann, A.; Strassburg, K.; Erban, A.; Kopka, J.: TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments. Bioinformatics 24 (5), pp. 732 - 737 (2008)

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87.

Journal Article

Marczak, L.; Kachlicki, P.; Kozniewski, P.; Skirycz, A.; Krajewski, P.; Stobiecki, M.: Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry monitoring of anthocyanins in extracts from Arabidopsis thaliana leaves. Rapid Communications in Mass Spectrometry 22 (23), pp. 3949 - 3956 (2008)

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88.

Journal Article

Matthaeus, F.; Salazar, C.; Ebenhoeh, O.: Biosynthetic potentials of metabolites and their hierarchical organization. PLoS Computational Biology 4 (4), p. e1000049 (2008)

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89.

Journal Article

May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), pp. 157 - 166 (2008)

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90.

Journal Article

Mazzella, M. A.; Zanor, M. I.; Fernie, A. R.; Casal, J. J.: Metabolic responses to red/far-red ratio and ontogeny show poor correlation with the growth rate of sunflower stems. Journal of Experimental Botany 59 (9), pp. 2469 - 2477 (2008)

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91.

Journal Article

McCabe, M. S.; Klaas, M.; Gonzalez-Rabade, N.; Poage, M.; Badillo-Corona, J. A.; Zhou, F.; Karcher, D.; Bock, R.; Gray, J. C.; Dix, P. J.: Plastid transformation of high-biomass tobacco variety Maryland Mammoth for production of human immunodeficiency virus type 1 (HIV-1) p24 antigen. Plant Biotechnology Journal 6 (9), pp. 914 - 929 (2008)

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92.

Journal Article

McKhann, H. I.; Gery, C.; Berard, A.; Leveque, S.; Zuther, E.; Hincha, D. K.; De Mita, S.; Brunel, D.; Teoule, E.: Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana. BMC Plant Biology 8, p. 105 (2008)

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93.

Journal Article

Melotto-Passarin, D. M.; Berger, I. J.; Dressano, K.; De Martin, V. D.; Oliveira, G. C. X.; Bock, R.; Carrer, H.: Phylogenetic relationships in Solanaceae and related species based on cpDNA sequence from plastid trnE-trnT region. Crop Breeding and Applied Biotechnology 8 (1), pp. 85 - 95 (2008)

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94.

Journal Article

Mendoza-Cozatl, D. G.; Butko, E.; Springer, F.; Torpey, J. W.; Komives, E. A.; Kehr, J.; Schroeder, J. I.: Identification of high levels of phytochelatins, glutathione and cadmium in the phloem sap of Brassica napus. A role for thiol-peptides in the long-distance transport of cadmium and the effect of cadmium on iron translocation. Plant Journal 54 (2), pp. 249 - 259 (2008)

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95.

Journal Article

Michelet, L.; Zaffagnini, M.; Vanacker, H.; Le Marechal, P.; Marchand, C.; Schroda, M.; Lemaire, S. D.; Decottignies, P.: In vivo targets of S-thiolation in Chlamydomonas reinhardtii. Journal of Biological Chemistry 283 (31), pp. 21571 - 21578 (2008)

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96.

Journal Article

Morgan, M. J.; Lehmann, M.; Schwarzlander, M.; Baxter, C. J.; Sienkiewicz-Porzucek, A.; Williams, T. C. R.; Schauer, N.; Fernie, A. R.; Fricker, M. D.; Ratcliffe, R. G. et al.; Sweetlove, L. J.; Finkemeier, I.: Decrease in manganese superoxide dismutase leads to reduced root growth and affects tricarboxylic acid cycle flux and mitochondrial redox homeostasis. Plant Physiology 147 (1), pp. 101 - 114 (2008)

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97.

Journal Article

Mutwil, M.; Obro, J.; Willats, W. G. T.; Persson, S.: GeneCAT - novel webtools that combine BLAST and co-expression analyses. Nucleic Acids Research 36 (Web Server issue), pp. W320 - W326 (2008)

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98.

Journal Article

Neigenfind, J.; Gyetvai, G.; Basekow, R.; Diehl, S.; Achenbach, U.; Gebhardt, C.; Selbig, J.; Kersten, B.: Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT. BMC Genomics 9, p. 356 (2008)

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99.

Journal Article

Neupert, J.; Karcher, D.; Bock, R.: Design of simple synthetic RNA thermometers for temperature-controlled gene expression in Escherichia coli. Nucleic Acids Research 36 (19), p. e124 (2008)

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100.

Journal Article

Nikoloski, Z.; Grimbs, S.; May, P.; Selbig, J.: Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology 254 (4), pp. 807 - 816 (2008)

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Journal Article (144)