Complete publication list

Publications of Alisdair Fernie

Journal Article (582)

  1. 551.
    Fernie, A. R.: Metabolome characterisation in plant system analysis. Functional Plant Biology 30 (1), pp. 111 - 120 (2003)
  2. 552.
    Giege, P.; Heazlewood, J. L.; Roessner-Tunali, U.; Millar, A. H.; Fernie, A. R.; Leaver, C. J.; Sweetlove, L. J.: Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells. Plant Cell 15 (9), pp. 2140 - 2151 (2003)
  3. 553.
    Junker, B. H.; Chu, C. C.; Sonnewald, U.; Willmitzer, L.; Fernie, A. R.: In plants the alc gene expression system responds more rapidly following induction with acetaldehyde than with ethanol. FEBS Letters 535 (1-3), pp. 136 - 140 (2003)
  4. 554.
    Kuehn, C.; Hajirezaei, M.-R.; Fernie, A. R.; Roessner-Tunali, U.; Czechowski, T.; Hirner, B.; Frommer, W. B.: The sucrose transporter StSUT1 localizes to sieve elements in potato tuber phloem and influences tuber physiology and development. Plant Physiology 131 (1), pp. 102 - 113 (2003)
  5. 555.
    Leggewie, G.; Kolbe, A.; Lemoine, R.; Roessner, U.; Lytovchenko, A.; Zuther, E.; Kehr, J.; Frommer, W. B.; Riesmeier, J. W.; Willmitzer, L. et al.; Fernie, A. R.: Overexpression of the sucrose transporter SoSUT1 in potato results in alterations in leaf carbon partitioning and in tuber metabolism but has little impact on tuber morphology. Planta 217 (1), pp. 158 - 167 (2003)
  6. 556.
    Lytovchenko, A.; Fernie, A. R.: Photosynthetic metabolism is severely impaired on the parallel reduction of plastidial and cytosolic isoforms of phosphoglucomutase. Plant Physiology and Biochemistry 41 (3), pp. 193 - 200 (2003)
  7. 557.
    Roessner-Tunali, U.; Urbanczyk-Wochniak, E.; Czechowski, T.; Kolbe, A.; Willmitzer, L.; Fernie, A. R.: De novo amino acid biosynthesis in potato tubers is regulated by sucrose levels. Plant Physiology 133 (2), pp. 683 - 692 (2003)
  8. 558.
    Roessner-Tunali, U.; Hegemann, B.; Lytovchenko, A.; Carrari, F.; Bruedigam, C.; Granot, D.; Fernie, A. R.: Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiology 133 (1), pp. 84 - 99 (2003)
  9. 559.
    Stitt, M.; Fernie, A. R.: From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions. Current Opinion in Biotechnology 14 (2), pp. 136 - 144 (2003)
  10. 560.
    Sweetlove, L. J.; Last, R. L.; Fernie, A. R.: Predictive metabolic engineering: A goal for systems biology. Plant Physiology 132 (2), pp. 420 - 425 (2003)
  11. 561.
    Fernie, A. R.; Willmitzer, L.; Trethewey, R. N.: Sucrose to starch: a transition in molecular plant physiology. Trends in Plant Science 7 (1), pp. 35 - 41 (2002)
  12. 562.
    Fernie, A. R.; Tiessen, A.; Stitt, M.; Willmitzer, L.; Geigenberger, P.: Altered metabolic fluxes result from shifts in metabolite levels in sucrose phosphorylase-expressing potato tubers. Plant Cell and Environment 25 (10), pp. 1219 - 1232 (2002)
  13. 563.
    Fernie, A. R.; Tauberger, E.; Lytovchenko, A.; Roessner, U.; Willmitzer, L.; Trethewey, R. N.: Antisense repression of cytosolic phosphoglucomutase in potato (Solanum tuberosum) results in severe growth retardation, reduction in tuber number and altered carbon metabolism. Planta 214 (4), pp. 510 - 520 (2002)
  14. 564.
    Fernie, A. R.; Swiedrych, A.; Tauberger, E.; Lytovchenko, A.; Trethewey, R. N.; Willmitzer, L.: Potato plants exhibiting combined antisense repression of cytosolic and plastidial isoforms of phosphoglucomutase surprisingly approximate wild type with respect to the rate of starch synthesis. Plant Physiology and Biochemistry 40 (11), pp. 921 - 927 (2002)
  15. 565.
    Fernie, A. R.; Roscher, A.; Ratcliffe, R. G.; Kruger, N. J.: Activation of pyrophosphate: fructose-6-phosphate 1-phosphotransferase by fructose 2,6-bisphosphate stimulates conversion of hexose phosphates to triose phosphates but does not influence accumulation of carbohydrates in phosphate-deficient tobacco cells. Physiologia Plantarum 114 (2), pp. 172 - 181 (2002)
  16. 566.
    Lytovchenko, A.; Sweetlove, L.; Pauly, M.; Fernie, A. R.: The influence of cytosolic phosphoglucomutase on photosynthetic carbohydrate metabolism. Planta 215 (6), pp. 1013 - 1021 (2002)
  17. 567.
    Lytovchenko, A.; Bieberich, K.; Willmitzer, L.; Fernie, A. R.: Carbon assimilation and metabolism in potato leaves deficient in plastidial phosphoglucomutase. Planta 215 (5), pp. 802 - 811 (2002)
  18. 568.
    Regierer, B.; Fernie, A. R.; Springer, F.; Perez-Melis, A.; Leisse, A.; Koehl, K. I.; Willmitzer, L.; Geigenberger, P.; Kossmann, J.: Starch content and yield increase as a result of altering adenylate pools in transgenic plants. Nature Biotechnology 20 (12), pp. 1256 - 1260 (2002)
  19. 569.
    Roessner, U.; Willmitzer, L.; Fernie, A. R.: Metabolic profiling and biochemical phenotyping of plant systems. Plant Cell Reports 21 (3), pp. 189 - 196 (2002)
  20. 570.
    Veramendi, J.; Fernie, A. R.; Leisse, A.; Willmitzer, L.; Trethewey, R. N.: Potato hexokinase 2 complements transgenic Arabidopsis plants deficient in hexokinase 1 but does not play a key role in tuber carbohydrate metabolism. Plant Molecular Biology 49 (5), pp. 491 - 501 (2002)
  21. 571.
    Fernie, A. R.; Willmitzer, L.: Molecular and biochemical triggers of potato tuber development. Plant Physiology 127 (4), pp. 1459 - 1465 (2001)
  22. 572.
    Fernie, A. R.; Willmitzer, L.: Update on tuber formation, dormancy and sprouting. Molecular and biochemical triggers of potato tuber development. Plant Physiology 127 (4), pp. 1459 - 1465 (2001)
  23. 573.
    Fernie, A. R.; Roessner, U.; Trethewey, R. N.; Willmitzer, L.: The contribution of plastidial phosphoglucomutase to the control of starch synthesis within the potato tuber. Planta 213 (3), pp. 418 - 426 (2001)
  24. 574.
    Fernie, A. R.; Roessner, U.; Leisse, A.; Lubeck, J.; Trethewey, R. N.; Willmitzer, L.: Simultaneous antagonistic modulation of enzyme activities in transgenic plants through the expression of a chimeric transcript. Plant Physiology and Biochemistry 39 (10), pp. 825 - 830 (2001)
  25. 575.
    Fernie, A. R.; Roessner, U.; Geigenberger, P.: The sucrose analog palatinose leads to a stimulation of sucrose degradation and starch synthesis when supplied to discs of growing potato tubers. Plant Physiology 125 (4), pp. 1967 - 1977 (2001)
  26. 576.
    Fernie, A. R.; Roscher, A.; Ratcliffe, R. G.; Kruger, N. J.: Fructose 2,6-bisphosphate activates pyrophosphate: fructose-6-phosphate 1-phosphotransferase and increases triose phosphate to hexose phosphate cycling in heterotrophic cells. Planta 212 (2), pp. 250 - 263 (2001)
  27. 577.
    Roessner, U.; Willmitzer, L.; Fernie, A. R.: High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems. Identification of phenocopies. Plant Physiology 127 (3), pp. 749 - 764 (2001)
  28. 578.
    Roessner, U.; Luedemann, A.; Brust, D.; Fiehn, O.; Linke, T.; Willmitzer, L.; Fernie, A. R.: Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13 (1), pp. 11 - 29 (2001)
  29. 579.
    Trethewey, R. N.; Fernie, A. R.; Bachmann, A.; Fleischer-Notter, H.; Geigenberger, P.; Willmitzer, L.: Expression of a bacterial sucrose phosphorylase in potato tubers results in a glucose-independent induction of glycolysis. Plant, Cell & Environment 24 (3), pp. 357 - 365 (2001)
  30. 580.
    Geigenberger, P.; Fernie, A. R.; Gibon, Y.; Christ, M.; Stitt, M.: Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers. Journal of Biological Chemistry 381 (8), pp. 723 - 740 (2000)
  31. 581.
    Tauberger, E.; Fernie, A. R.; Emmermann, M.; Renz, A.; Kossmann, J.; Willmitzer, L.; Trethewey, R. N.: Antisense inhibition of plastidial phosphoglucomutase provides compelling evidence that potato tuber amyloplasts import carbon from the cytosol in the form of glucose-6-phosphate. Plant Journal 23 (1), pp. 43 - 53 (2000)
  32. 582.
    Hempstead, P. D.; Yewdall, S. J.; Fernie, A. R.; Lawson, D. M.; Artymiuk, P. J.; Rice, D. W.; Ford, G. C.; Harrison, P. M.: Comparison of the three-dimensional structures of recombinant human H and horse L ferritins at high resolution. Journal of Molecular Biology 268 (2), pp. 424 - 448 (1997)

Book (2)

  1. 583.
    Fernie, A. R.; Bauwe, H.; Weber, A. P.M.: Photorespiration: Methods and Protocols. Humanapress, New York (2017)
  2. 584.
    Baginsky, S.; Fernie, A. R.: Plant Systems Biology. Birkhäuser Verlag, Basel, SUI (2007)

Book Chapter (20)

  1. 585.
    Watanabe, M.; Tohge, T.; Balazadeh, S.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive Metabolomics Studies of Plant Developmental Senescence. In: Plant Senescence: Methods and Protocols, pp. 339 - 358 (Ed. Guo, Y.). Springer New York, New York, NY (2018)
  2. 586.
    Del-Saz, N.F.; Ribas-Carbo, M.; Martorell, G.; Fernie, A. R.; Florez-Sarasa, I. D.: Measurements of electron partitioning between cytochrome and alternative oxidase pathways in plant tissues. In: Methods in Molecular Biology, Vol. 1670, pp. 203 - 217. Humana Press, Clifton, N.J. (2017)
  3. 587.
    Fernie, A. R.; Bauwe, H.; Sweetlove, L.J.: Investigating the role of the photorespiratory pathway in non-photosynthetic tissues. In: Methods in Molecular Biology, Vol. 1653, pp. 217 - 225. Humana Press, Clifton, N.J. (2017)
  4. 588.
    Fernie, A. R.; Tohge, T.: The Genetics of Plant Metabolism. In: Annual Review of Genetics, Vol. 51, pp. 287 - 310 (2017)
  5. 589.
    Obata, T.; Rosado-Souza, L.; Fernie, A. R.: Coupling radiotracer experiments with chemical fractionation for the estimation of respiratory fluxes. In: Methods in Molecular Biology, Vol. 1670, pp. 17 - 30. Humana Press, Clifton, N.J. (2017)
  6. 590.
    Omena-Garcia, R.P.; Araújo, W.L.; Gibon, Y.; Fernie, A. R.; Nunes-Nesi, A.: Measurement of tricarboxylic acid cycle enzyme activities in plants. In: Methods in Molecular Biology, Vol. 1670, pp. 167 - 182 (2017)
  7. 591.
    de Souza, L. P.; Szecówka, M.; Fernie, A. R.; Tohge, T.: 13CO2 labeling and mass spectral analysis of photorespiration. In: Methods in Molecular Biology, Vol. 1653, pp. 157 - 166. Humana Press, Clifton, N.J. (2017)
  8. 592.
    Osorio, S.; Fernie, A. R.: Plant Systems Biology. In: Systems Biology (Ed. Meyers, R. A.). Wiley-Blackwell (2012)
  9. 593.
    Osorio, S.; Do, P. T.; Fernie, A. R.: Profiling Primary Metabolites of Tomato Fruit with Gas Chromatography/Mass Spectrometry. In: Plant Metabolomics: Methods and Protocols, 2012/02/29 Ed., pp. 101 - 110 (Eds. Hardy, N. W.; Hall, R. D.). Humana Press Inc., Totowa, NJ, USA (2012)
  10. 594.
    Fernie, A. R.; Keurentjes, J. J. B.: Genetics, genomics and metabolomics. In: The biology of plant metabolomics, 2011/05/03 Ed., pp. 219 - 260 (Ed. Hall, R. D.). Blackwell-Wiley, London, UK (2011)
  11. 595.
    Fait, A.; Sienkiewicz-Porzucek, A.; Fernie, A. R.: Metabolomics approaches to advance understanding of nitrogen assimilation and carbon nitrogen interactions. In: Nitrogen Metabolism in Plants in the Post-Genomic Era, pp. 249 - 268 (Eds. Foyer, C. H.; Zhang, H.). Wiley-Blackwell, Oxford, UK (2010)
  12. 596.
    Erban, A.; Schauer, N.; Fernie, A. R.; Kopka, J.: Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles. In: Metabolomics: Methods and Protocols, pp. 19 - 38 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)
  13. 597.
    Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites. In: Metabolomics: Methods and Protocols, pp. 77 - 85 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)
  14. 598.
    Carrari, F.; Schauer, N.; Willmitzer, L.; Fernie, A. R.: Systems biology: A renaissance of the Top-down approach for plant analysis. In: Plant Metabolomics, pp. 185 - 198 (Eds. Nagata, T.; Lörz, H.; Widholm, J. M.). Springer-Verlag, Heidelberg, GER (2006)
  15. 599.
    Geigenberger, P.; Fernie, A. R.: Starch biosynthesis in the potato tuber. In: Food Biochemistry and Food Processing, pp. 253 - 270 (Eds. Hui, Y. H.; Corke, H.; DeLeyn, I.; Nip, W.-K.; Cross, N.). Blackwell Publ., Ames, IA, USA (2006)
  16. 600.
    Lytovchenko, A.; Geigenberger, P.; Willmitzer, L.; Fernie, A. R.: Starch content in plant tissues. In: Plant Genetic Engineering: Improving the Nutritional & Therapeutic Qualities of Plants, pp. 1 - 29 (Ed. Jaiwal, P. K.). Studium Press LLC, Houston, TX, USA (2006)
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