Complete publication list

Publications of Alisdair Fernie

Journal Article (619)

  1. 551.
    Urbanczyk-Wochniak, E.; Usadel, B.; Thimm, O.; Nunes-Nesi, A.; Carrari, F.; Davy, M.; Blaesing, O.; Kowalczyk, M.; Weicht, D.; Polinceusz, A. et al.; Meyer, S.; Stitt, M.; Fernie, A. R.: Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60 (5), pp. 773 - 792 (2006)
  2. 552.
    Usadel, B.; Nagel, A.; Steinhauser, D.; Gibon, Y.; Blaesing, O. E.; Redestig, H.; Sreenivasulu, N.; Krall, L.; Hannah, M. A.; Poree, F. et al.; Fernie, A. R.; Stitt, M.: PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, p. 535 (2006)
  3. 553.
    Wagner, S.; Bernhardt, A.; Leuendorf, J. E.; Drewke, C.; Lytovchenko, A.; Mujahed, N.; Gurgui, C.; Frommer, W. B.; Leistner, E.; Fernie, A. R. et al.; Hellmann, H.: Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis. Plant Cell 18 (7), pp. 1722 - 1735 (2006)
  4. 554.
    Baxter, C. J.; Carrari, F.; Bauke, A.; Overy, S.; Hill, S. A.; Quick, W. P.; Fernie, A. R.; Sweetlove, L. J.: Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids. Plant and Cell Physiology 46 (3), pp. 425 - 437 (2005)
  5. 555.
    Carrari, F.; Coll-Garcia, D.; Schauer, N.; Lytovchenko, A.; Palacios-Rojas, N.; Balbo, I.; Rosso, M.; Fernie, A. R.: Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth. Plant Physiology 137 (1), pp. 70 - 82 (2005)
  6. 556.
    Davies, H. V.; Shepherd, L. V. T.; Burrell, M. M.; Carrari, F.; Urbanczyk-Wochniak, E.; Leisse, A.; Hancock, R. D.; Taylor, M.; Viola, R.; Ross, H. et al.; McRae, D.; Willmitzer, L.; Fernie, A. R.: Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology 46 (7), pp. 1103 - 1115 (2005)
  7. 557.
    Fernie, A. R.; Geigenberger, P.; Stitt, M.: Flux an important, but neglected, component of functional glenomics. Current Opinion in Plant Biology 8 (2), pp. 174 - 182 (2005)
  8. 558.
    Geigenberger, P.; Regierer, B.; Nunes-Nesi, A.; Leisse, A.; Urbanczyk-Wochniak, E.; Springer, F.; van Dongen, J. T.; Kossmann, J.; Fernie, A. R.: Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance. Plant Cell 17 (7), pp. 2077 - 2088 (2005)
  9. 559.
    Ishizaki, K.; Larson, T. R.; Schauer, N.; Fernie, A. R.; Graham, I. A.; Leaver, C. J.: The critical role of Arabidopsis electron-transfer flavoprotein: Ubiquinone oxidoreductase during dark-induced starvation. Plant Cell 17 (9), pp. 2587 - 2600 (2005)
  10. 560.
    Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmueller, E.; Doermann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M. et al.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D.: GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (8), pp. 1635 - 1638 (2005)
  11. 561.
    Lytovchenko, A.; Schauer, N.; Willmitzer, L.; Fernie, A. R.: Tuber-specific cytosolic expression of a bacterial phosphoglucomutase in potato (Solanum tuberosum L.) dramatically alters carbon partitioning. Plant and Cell Physiology 46 (4), pp. 588 - 597 (2005)
  12. 562.
    Lytovchenko, A.; Hajirezaei, M.-R.; Eickmeier, I.; Mittendorf, V.; Sonnewald, U.; Willmitzer, L.; Fernie, A. R.: Expression of an Escherichia coli phosphoglucomutase in potato (Solanum tuberosum L.) results in minor changes in tuber metabolism and a considerable delay in tuber sprouting. Planta 221 (6), pp. 915 - 927 (2005)
  13. 563.
    Nunes-Nesi, A.; Carrari, F.; Lytovchenko, A.; Smith, A. M. O.; Loureiro, M. E.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R.: Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants. Plant Physiology 137 (2), pp. 611 - 622 (2005)
  14. 564.
    Schauer, N.; Zamir, D.; Fernie, A. R.: Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex. Journal of Experimental Botany 56 (410), pp. 297 - 307 (2005)
  15. 565.
    Schauer, N.; Steinhauser, D.; Strelkov, S.; Schomburg, D.; Allison, G.; Moritz, T.; Lundgren, K.; Roessner-Tunali, U.; Forbes, M. G.; Willmitzer, L. et al.; Fernie, A. R.; Kopka, J.: GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Letters 579 (6), pp. 1332 - 1337 (2005)
  16. 566.
    Schauer, N.; Fernie, A. R.: Intraspezifische Introgression - wie die Genetik biochemische Phänotype beeinflusst. GenomXpress 1, pp. 14 - 16 (2005)
  17. 567.
    Studart-Guimaraes, C.; Gibon, Y.; Frankel, N.; Wood, C. C.; Zanor, M. I.; Fernie, A. R.; Carrari, F.: Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato. Plant Molecular Biology 59 (5), pp. 781 - 791 (2005)
  18. 568.
    Sweetlove, L. J.; Fernie, A. R.: Regulation of metabolic networks: understanding metabolic complexity in the systems biology era. New Phytologist 168 (1), pp. 9 - 23 (2005)
  19. 569.
    Urbanczyk-Wochniak, E.; Fernie, A. R.: Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown tomato (Solanum lycopersicum) plants. Journal of Experimental Botany 56 (410), pp. 309 - 321 (2005)
  20. 570.
    Urbanczyk-Wochniak, E.; Baxter, C.; Kolbe, A.; Kopka, J.; Sweetlove, L. J.; Fernie, A. R.: Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves. Planta 221 (6), pp. 891 - 903 (2005)
  21. 571.
    Bender-Machado, L.; Bauerlein, M.; Carrari, F.; Schauer, N.; Lytovchenko, A.; Gibon, Y.; Kelly, A. A.; Loureiro, M. E.; Muller-Rober, B.; Willmitzer, L. et al.; Fernie, A. R.: Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis. Plant Molecular Biology 55 (5), pp. 645 - 662 (2004)
  22. 572.
    Carrari, F.; Fernie, A. R.; Iusem, N. D.: Heard it through the grapevine? ABA and sugar cross-talk: the ASR story. Trends in Plant Science 9 (2), pp. 57 - 59 (2004)
  23. 573.
    Debnam, P. M.; Fernie, A. R.; Leisse, A.; Golding, A.; Bowsher, C. G.; Grimshaw, C.; Knight, J. S.; Emes, M. J.: Altered activity of the P2 isoform of plastidic glucose 6-phosphate dehydrogenase in tobacco (Nicotiana tabacum cv. Samsun) causes changes in carbohydrate metabolism and response to oxidative stress in leaves. Plant Journal 38 (1), pp. 49 - 59 (2004)
  24. 574.
    Fernie, A. R.; Trethewey, R. N.; Krotzky, A. J.; Willmitzer, L.: Innovation - Metabolite profiling: from diagnostics to systems biology. Nature Reviews Molecular Cell Biology 5 (9), pp. 763 - 769 (2004)
  25. 575.
    Fernie, A. R.; Carrari, F.; Sweetlove, L. J.: Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport. Current Opinion in Plant Biology 7 (3), pp. 254 - 261 (2004)
  26. 576.
    Fridman, E.; Carrari, F.; Liu, Y. S.; Fernie, A. R.; Zamir, D.: Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science 305 (5691), pp. 1786 - 1789 (2004)
  27. 577.
    Geigenberger, P.; Stitt, M.; Fernie, A. R.: Metabolic control analysis and regulation of the conversion of sucrose to starch in growing potato tubers. Plant Cell and Environment 27 (6), pp. 655 - 673 (2004)
  28. 578.
    Geigenberger, P.; Regierer, B.; Lytovchenko, A.; Leisse, A.; Schauer, N.; Springer, F.; Kossmann, J.; Fernie, A. R.: Heterologous expression of a ketohexokinase in potato plants leads to inhibited rates of photosynthesis, severe growth retardation and abnormal leaf development. Planta 218 (4), pp. 569 - 578 (2004)
  29. 579.
    Junker, B. H.; Wuttke, R.; Tiessen, A.; Geigenberger, P.; Sonnewald, U.; Willmitzer, L.; Fernie, A. R.: Temporally regulated expression of a yeast invertase in potato tubers allows dissection of the complex metabolic phenotype obtained following its constitutive expression. Plant Molecular Biology 56 (1), pp. 91 - 110 (2004)
  30. 580.
    Obiadalla-Ali, H.; Fernie, A. R.; Lytovchenko, A.; Kossmann, J.; Lloyd, J. R.: Inhibition of chloroplastic fructose 1,6-bisphosphatase in tomato fruits leads to decreased fruit size, but only small changes in carbohydrate metabolism. Planta 219 (3), pp. 533 - 540 (2004)
  31. 581.
    Obiadalla-Ali, H.; Fernie, A. R.; Kossmann, J.; Lloyd, J. R.: Developmental analysis of carbohydrate metabolism in tomato (Lycopersicon esculentum cv. Micro-Tom) fruits. Physiologia Plantarum 120 (2), pp. 196 - 204 (2004)
  32. 582.
    Roessner-Tunali, U.; Liu, J. L.; Leisse, A.; Balbo, I.; Perez-Melis, A.; Willmitzer, L.; Fernie, A. R.: Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in C-13 labelled isotopes. Plant Journal 39 (4), pp. 668 - 679 (2004)
  33. 583.
    Urbanczyk-Wochniak, E.; Luedemann, A.; Kopka, J.; Selbig, J.; Roessner-Tunali, U.; Willmitzer, L.; Fernie, A. R.: Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4 (10), pp. 989 - 993 (2003)
  34. 584.
    Urbanczyk-Wochniak, E.; Leisse, A.; Roessner-Tunali, U.; Lytovchenko, A.; Reismeier, J.; Willmitzer, L.; Fernie, A. R.: Expression of a bacterial xylose isomerase in potato tubers results in an altered hexose composition and a consequent induction of metabolism. Plant and Cell Physiology 44 (12), pp. 1359 - 1367 (2003)
  35. 585.
    Bologa, K. L.; Fernie, A. R.; Leisse, A.; Loureiro, M. E.; Geigenberger, P.: A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers. Plant Physiology 132 (4), pp. 2058 - 2072 (2003)
  36. 586.
    Carrari, F.; Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: Engineering central metabolism in crop species: learning the system. Metabolic Engineering 5 (3), pp. 191 - 200 (2003)
  37. 587.
    Carrari, F.; Nunes-Nesi, A.; Gibon, Y.; Lytovchenko, A.; Loureiro, M. E.; Fernie, A. R.: Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato. Plant Physiology 133 (3), pp. 1322 - 1335 (2003)
  38. 588.
    Fernie, A. R.: Metabolome characterisation in plant system analysis. Functional Plant Biology 30 (1), pp. 111 - 120 (2003)
  39. 589.
    Giege, P.; Heazlewood, J. L.; Roessner-Tunali, U.; Millar, A. H.; Fernie, A. R.; Leaver, C. J.; Sweetlove, L. J.: Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells. Plant Cell 15 (9), pp. 2140 - 2151 (2003)
  40. 590.
    Junker, B. H.; Chu, C. C.; Sonnewald, U.; Willmitzer, L.; Fernie, A. R.: In plants the alc gene expression system responds more rapidly following induction with acetaldehyde than with ethanol. FEBS Letters 535 (1-3), pp. 136 - 140 (2003)
  41. 591.
    Kuehn, C.; Hajirezaei, M.-R.; Fernie, A. R.; Roessner-Tunali, U.; Czechowski, T.; Hirner, B.; Frommer, W. B.: The sucrose transporter StSUT1 localizes to sieve elements in potato tuber phloem and influences tuber physiology and development. Plant Physiology 131 (1), pp. 102 - 113 (2003)
  42. 592.
    Leggewie, G.; Kolbe, A.; Lemoine, R.; Roessner, U.; Lytovchenko, A.; Zuther, E.; Kehr, J.; Frommer, W. B.; Riesmeier, J. W.; Willmitzer, L. et al.; Fernie, A. R.: Overexpression of the sucrose transporter SoSUT1 in potato results in alterations in leaf carbon partitioning and in tuber metabolism but has little impact on tuber morphology. Planta 217 (1), pp. 158 - 167 (2003)
  43. 593.
    Lytovchenko, A.; Fernie, A. R.: Photosynthetic metabolism is severely impaired on the parallel reduction of plastidial and cytosolic isoforms of phosphoglucomutase. Plant Physiology and Biochemistry 41 (3), pp. 193 - 200 (2003)
  44. 594.
    Roessner-Tunali, U.; Urbanczyk-Wochniak, E.; Czechowski, T.; Kolbe, A.; Willmitzer, L.; Fernie, A. R.: De novo amino acid biosynthesis in potato tubers is regulated by sucrose levels. Plant Physiology 133 (2), pp. 683 - 692 (2003)
  45. 595.
    Roessner-Tunali, U.; Hegemann, B.; Lytovchenko, A.; Carrari, F.; Bruedigam, C.; Granot, D.; Fernie, A. R.: Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiology 133 (1), pp. 84 - 99 (2003)
  46. 596.
    Stitt, M.; Fernie, A. R.: From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions. Current Opinion in Biotechnology 14 (2), pp. 136 - 144 (2003)
  47. 597.
    Sweetlove, L. J.; Last, R. L.; Fernie, A. R.: Predictive metabolic engineering: A goal for systems biology. Plant Physiology 132 (2), pp. 420 - 425 (2003)
  48. 598.
    Fernie, A. R.; Willmitzer, L.; Trethewey, R. N.: Sucrose to starch: a transition in molecular plant physiology. Trends in Plant Science 7 (1), pp. 35 - 41 (2002)
  49. 599.
    Fernie, A. R.; Tiessen, A.; Stitt, M.; Willmitzer, L.; Geigenberger, P.: Altered metabolic fluxes result from shifts in metabolite levels in sucrose phosphorylase-expressing potato tubers. Plant Cell and Environment 25 (10), pp. 1219 - 1232 (2002)
  50. 600.
    Fernie, A. R.; Tauberger, E.; Lytovchenko, A.; Roessner, U.; Willmitzer, L.; Trethewey, R. N.: Antisense repression of cytosolic phosphoglucomutase in potato (Solanum tuberosum) results in severe growth retardation, reduction in tuber number and altered carbon metabolism. Planta 214 (4), pp. 510 - 520 (2002)
Go to Editor View
loading content