Vollständige Publikationsliste

Publikationen von Alisdair Fernie

Zeitschriftenartikel (550)

  1. 1.
    Arrivault, S.; Obata, T.; Szecówka, M.; Mengin, V.; Guenther, M.; Höhne, M.; Fernie, A. R.; Stitt, M.: Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation. Journal of Experimental Botany 68, S. 283 - 298 (2017)
  2. 2.
    Borghi, M.; Fernie, A. R.; Schiestl, F. P.; Bouwmeester, H. J.: The Sexual Advantage of Looking, Smelling, and Tasting Good: The Metabolic Network that Produces Signals for Pollinators. Trends in Plant Science (2017)
  3. 3.
    Eisenhut, M.; Bräutigam, A.; Timm, S.; Florian, A.; Tohge, T.; Fernie, A. R.; Bauwe, H.; Weber, A. P.M.: Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered \CO2\ availability. Molecular Plant 10 (1), S. 47 - 61 (2017)
  4. 4.
    Estrada-Johnson, E.; Csukasi, F.; Pizarro, C. M.; Vallarino, J. G.; Kiryakova, Y.; Vioque, A.; Brumos, J.; Medina-Escobar, N.; Botella, M. A.; Alonso, J. M. et al.; Fernie, A. R.; Sanchez-Sevilla, J. F.; Osorio, S.; Valpuesta, V.: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science (2017)
  5. 5.
    Flores-Tornero, M.; Anoman, A. D.; Rosa-Tellez, S.; Toujani, W.; Weber, A. P. M.; Eisenhut, M.; Kurz, S.; Alseekh, S.; Fernie, A. R.; Munoz-Bertomeu, J. et al.; Ros, R.: Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants. The Plant Journal 89 (6), S. 1146 - 1158 (2017)
  6. 6.
    Geigenberger, P.; Thormählen, I.; Daloso, D. M.; Fernie, A. R.: The Unprecedented Versatility of the Plant‎ Thioredoxin System. Trends in Plant Science 22 (3), S. 249 - 262 (2017)
  7. 7.
    Goldy, C.; Svetaz, L. A.; Bustamante, C. A.; Allegrini, M.; Valentini, G. H.; Drincovich, M. F.; Fernie, A. R.; Lara, M. V.: Comparative proteomic and metabolomic studies between Prunus persica genotypes resistant and susceptible to Taphrina deformans suggest a molecular basis of resistance. Plant Physiology and Biochemistry 118, S. 245 - 255 (2017)
  8. 8.
    Ishihara, H.; Moraes, T. A.; Pyl, E. T.; Schulze, W. X.; Obata, T.; Scheffel, A.; Fernie, A. R.; Sulpice, R.; Stitt, M.: Growth rate correlates negatively with protein turnover in Arabidopsis accessions. The Plant Journal 91 (3), S. 416 - 429 (2017)
  9. 9.
    Jin, M.; Zhang, X.; Zhao, M.; Deng, M.; Du, Y.; Zhou, Y.; Wang, S.; Tohge, T.; Fernie, A. R.; Willmitzer, L. et al.; Brotman, Y.; Yan, J.; Weiwei, W.: Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis. BMC Plant Biology 17 (1), 17 (2017)
  10. 10.
    Jorge, T. F.; Duro, N.; da Costa, M.; Florian, A.; Ramalho, J. C.; Ribeiro-Barros, A. I.; Fernie, A. R.; António, C.: GC-TOF-MS analysis reveals salt stress-responsive primary metabolites in Casuarina glauca tissues. Metabolomics 13 (8), 95 (2017)
  11. 11.
    Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Todaka, D.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants. Plant Biotechnology Journal 15 (4), S. 458 - 471 (2017)
  12. 12.
    Malinova, I.; Alseekh, S.; Feil, R.; Fernie, A. R.; Baumann, O.; Schöttler, M. A.; Lunn, J. E.; Fettke, J.: Starch synthase 4 and plastidal phosphorylase differentially affect starch granule number and morphology. Plant Physiology (2017)
  13. 13.
    Matthijs, M.; Fabris, M.; Obata, T.; Foubert, I.; Franco‐Zorrilla, J. M.; Solano, R.; Fernie, A. R.; Vyverman, W.; Goossens, A.: The transcription factor bZIP14 regulates the TCA cycle in the diatom Phaeodactylum tricornutum. EMBO Journal 36 (8), S. 959 - 1116 (2017)
  14. 14.
    Modde, K.; Timm, S.; Florian, A.; Michl, K.; Fernie, A. R.; Bauwe, a. H.: High serine:glyoxylate aminotransferase activity lowers leaf daytime serine levels, inducing the phosphoserine pathway in Arabidopsis. Journal of Experimental Botany 68 (3), S. 643 - 656 (2017)
  15. 15.
    Moschen, S.; Di Rienzo, J. A.; Higgins, J.; Tohge, T.; Watanabe, M.; Gonzalez, S.; Rivarola, M.; Garcia-Garcia, F.; Dopazo, J.; Esteban Hopp, H. et al.; Hoefgen, R.; Fernie, A. R.; Paniego, N.; Fernandez, P.; Heinz, R. A.: Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.). Plant Molecular Biology 94 (4-5), S. 549 - 564 (2017)
  16. 16.
    Nelson, D. R.; Khraiwesh, B.; Fu, W.; Alseekh, S.; Jaiswal, A.; Chaiboonchoe, A.; Hazzouri, K. M.; O'Connor, M. J.; Butterfoss, G. L.; Drou, N. et al.; Rowe, J. D.; Harb, J.; Fernie, A. R.; Gunsalus, K. C.; Salehi-Ashtiani, K.: The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization. eLife (2017)
  17. 17.
    Poplawski, P.; Tohge, T.; Boguslawska, J.; Rybicka, B.; Tanski, Z.; Trevino, V.; Fernie, A. R.; Piekielko-Witkowska, A.: Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1863 (3), S. 744 - 752 (2017)
  18. 18.
    Romero-Munar, A.; Del-Saz, N. F.; Ribas-Carbó, M.; Flexas, J.; Baraza, E.; Florez-Sarasa, I. D.; Fernie, A. R.; Gulías, J.: Arbuscular mycorrhizal symbiosis with Arundo donax decreases root respiration and increases both photosynthesis and plant biomass accumulation. Plant Cell Environment 40 (7), S. 1115 - 1126 (2017)
  19. 19.
    Shahnejat-Bushehri, S.; Allu, A. D.; Mehterov, N.; Thirumalaikumar, V. P.; Alseekh, S.; Fernie, A. R.; Mueller-Roeber, B.; Balazadeh, S.: Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Frontiers in Plant Science (2017)
  20. 20.
    Smirnova, J.; Fernie, A. R.; Spahn, C. M.T.; Steup, M.: Photometric assay of maltose and maltose-forming enzyme activity by using 4-alpha-glucanotransferase (DPE2) from higher plants. Analytical Biochemistry 532, S. 72 - 82 (2017)
  21. 21.
    Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Arabidopsis fructokinases are important for seed oil accumulation and vascular development. Frontiers in Plant Science 7, 2047 (2017)
  22. 22.
    Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Corrigendum: Arabidopsis Fructokinases Are Important for Seed Oil Accumulation and Vascular Development. Frontiers in Plant Science 8, 303 (2017)
  23. 23.
    Svetaz, L. A.; Bustamante, C. A.; Goldy, C.; Rivero, N.; Müller, G. L.; Valentini, G. H.; Fernie, A. R.; Drincovich, M. F.; Lara, M. V.: Unraveling early events in the Taphrina deformans – Prunus persica interaction: an insight into the differential responses in resistant and susceptible genotypes. Plant, Cell and Environment (angenommen)
  24. 24.
    Sweetlove, L. J.; Nielsen, J.; Fernie, A. R.: Engineering central metabolism - a grand challenge for plant biologists. The Plant Journal 90, S. 749 - 763 (2017)
  25. 25.
    Todaka, D.; Zhao, Y.; Yoshida, T.; Kudo, M.; Kidokoro, S.; Mizoi, J.; Kodaira, K.-S.; Takebayashi, Y.; Kojima, M.; Sakakibara, H. et al.; Toyooka, K.; Sato, M.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions. The Plant Journal 90 (1), S. 61 - 78 (2017)
  26. 26.
    Tohge, T.; Fernie, A. R.: Leveraging Natural Variance towards Enhanced Understanding of Phytochemical Sunscreens. Trends in Plant Science 22 (4), S. 308 - 315 (2017)
  27. 27.
    Vallarino, J. G.; Yeats, T. H.; Maximova, E.; Rose, J. K.; Fernie, A. R.; Osorio, S.: Postharvest changes in LIN5-down-regulated plants suggest a role for sugar deficiency in cuticle metabolism during ripening. Phytochemistry 142, S. 11 - 20 (2017)
  28. 28.
    Vidal-Meireles, A.; Neupert, J.; Zsigmond, L.; Rosado-Souza, L.; Kovács, L.; Nagy, V.; Galambos, A.; Fernie, A. R.; Bock, R.; Tóth, S. Z.: Regulation of ascorbate biosynthesis in green algae has evolved to enable rapid stress-induced response via the VTC2 gene encoding GDP-l-galactose phosphorylase. New Phytologist 214 (2), S. 668 - 681 (2017)
  29. 29.
    Villanova, V.; Fortunato, A.E.; Singh, D.; Bo, D.D.; Conte, M.; Obata, T.; Jouhet, J.; Fernie, A. R.; Marechal, E.; Falciatore, A. et al.; Pagliardini, J.; Le Monnier, A.; Poolman, M.; Curien, G.; Petroutsos, D.; Finazzi, G.: Investigating mixotrophic metabolism in the model diatom phaeodactylum tricornutum. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 372 (1728), 20160404 (2017)
  30. 30.
    Zhang, Y.; Beard, K. F. M.; Swart, C.; Bergmann, S.; Krahnert, I.; Nikoloski, Z.; Graf, A.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R. et al.; Obata, T.: Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle. Nature Communications (2017)
  31. 31.
    Zhu, F.-Y.; Chen, M.-X.; Ye, N.-H.; Shi, L.; Ma, K.-L.; Yang, J.-F.; Cao, Y.-Y.; Zhang, Y.; Yoshida, T.; Fernie, A. R. et al.; Fan, G.-Y.; Wen, B.; Zhou, R.; Liu, T.-Y.; Fan, T.; Gao, B.; Zhang, D.; Hao, G.-F.; Xiao, S.; Liu, Y.-G.; Zhang, J.: Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings. The Plant Journal 91 (3), S. 518 - 533 (2017)
  32. 32.
    de Souza, L. P.; Naake, T.; Tohge, T.; Fernie, A. R.: From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. GigaScience 6 (7) (angenommen)
  33. 33.
    Aarabi, F.; Kusajima, M.; Tohge, T.; Konishi, T.; Gigolashvili, T.; Takamune, M.; Sasazaki, Y.; Watanabe, M.; Nakashita, H.; Fernie, A. R. et al.; Saito, K.; Takahashi, H.; Hubberten, H. M.; Hoefgen, R.; Maruyama-Nakashita, A.: Sulfur deficiency–induced repressor proteins optimize glucosinolate biosynthesis in plants. Science Advances 2 (10), e1601087 (2016)
  34. 34.
    Antonio, C.; Päpke, C.; Rocha, M.; Diab, H.; Limami, A. M.; Obata, T.; Fernie, A. R.; van Dongen, J.: Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution. Plant Physiolog 170 (1), S. 43 - 56 (2016)
  35. 35.
    Basler, G.; Küken, A.; Fernie, A. R.; Nikoloski, Z.: Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence? Frontiers in Bioengineering and Biotechnology 4, 31 (2016)
  36. 36.
    Beleggia, R.; Rau, D.; Laido, G.; Platani, C.; Nigro, F.; Fragasso, M.; De Vita, P.; Scossa, F.; Fernie, A. R.; Nikoloski, Z. et al.; Papa, R.: Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels. Molecular Biology and Evolution 33 (7), S. 1740 - 1753 (2016)
  37. 37.
    Betti, M.; Bauwe, H.; Busch, F. A.; Fernie, A. R.; Keech, O.; Levey, M.; Ort, D. R.; Parry, M. A. J.; Sage, R.; Timm, S. et al.; Walker, B.; Weber, A. P. M.: Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement. Journal of Experimental Botany 67 (10-SI), S. 2977 - 2988 (2016)
  38. 38.
    Bunik, V.; Mkrtchyan, G.; Grabarska, A.; Oppermann, H.; Daloso, D. M.; Araujo, W. L.; Juszczak, M.; Rzeski, W.; Bettendorff, L.; Fernie, A. R. et al.; Meixensberger, J.; Stepulak, A.; Gaunitz, F.: Inhibition of mitochondrial 2-oxoglutarate dehydrogenase impairs viability of cancer cells in a cell-specific metabolism-dependent manner. ONCOTARGET 7 (18), S. 26400 - 26421 (2016)
  39. 39.
    Bustamante, C. A.; Monti, L. L.; Gabilondo, J.; Scossa, F.; Valentini, G.; Budde, C. O.; Lara, M. V.; Fernie, A. R.; Drincovich, M. F.: Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits. Frontiers in Plant Science 7, 1478 (2016)
  40. 40.
    Colinas, M.; Eisenhut, M.; Tohge, T.; Pesquera, M.; Fernie, A. R.; Weber, A. P. M.; Fitzpatrick, T. B.: Balancing of B-6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis. The Plant Cell 28 (2), S. 439 - 453 (2016)
  41. 41.
    Coluccio Leskow, C.; Kamenetzky, L.; Guadalupe Dominguez, P.; Diaz Zirpolo, J. A.; Obata, T.; Costa, H.; Marti, M.; Taboga, O.; Keurentjes, J.; Sulpice, R. et al.; Ishihara, H.; Stitt, M.; Fernie, A. R.; Carrari, F.: Allelic differences in a vacuolar invertase affect Arabidopsis growth at early plant development. Journal of Experimental Botany 67 (14), S. 4091 - 4103 (2016)
  42. 42.
    Czedik-Eysenberg, A.; Arrivault, S.; Lohse, M.A.; Feil, R.; Krohn, N.; Encke, B.; Nunes-Nesi, A.; Fernie, A. R.; Lunn, J. E.; Sulpice, R. et al.; Stitt, M.: The interplay between carbon availability and growth in different zones of the growing maize leaf. Plant Physiology 172 (2), S. 943 - 967 (2016)
  43. 43.
    Daloso, D. M.; Williams, T. C. R.; Antunes, W. C.; Pinheiro, D. P.; Mueller, C.; Loureiro, M. E.; Fernie, A. R.: Guard cell-specific upregulation of sucrose synthase 3 reveals that the role of sucrose in stomatal function is primarily energetic. New Phytologist 209 (4), S. 1470 - 1483 (2016)
  44. 44.
    Daloso, D. M.; dos Anjos, L.; Fernie, A. R.: Roles of sucrose in guard cell regulation. New Phytologist 211 (3), S. 809 - 818 (2016)
  45. 45.
    Del-Saz, N. F.; Florez-Sarasa, I. D.; Clemente-Moreno, M. J.; Mhadhbi, H.; Flexas, J.; Fernie, A. R.; Ribas-Carbó, M.: Salinity tolerance is related to cyanide-resistant alternative respiration in Medicago truncatula under sudden severe stress. Plant, Cell and Environment 39 (11), S. 2361 - 2369 (2016)
  46. 46.
    Eggert, E.; Obata, T.; Gerstenberger, A.; Gier, K.; Brandt, T.; Fernie, A. R.; Schulze, W. X.; Kühn, C.: A sucrose transporter-interacting protein disulphide isomerase affects redox homeostasis and links sucrose partitioning with abiotic stress tolerance. Plant, Cell and Environment 39 (6), S. 1366 - 1380 (2016)
  47. 47.
    Filippou, P.; Antoniou, C.; Obata, T.; Van Der Kelen, K.; Harokopos, V.; Kanetis, L.; Aidinis, V.; Van Breusegem, F.; Fernie, A. R.; Fotopoulos, V.: Kresoxim-methyl primes Medicago truncatula plants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment. Journal of Experimental Botany 67 (5), S. 1259 - 1274 (2016)
  48. 48.
    Florez-Sarasa, I. D.; Ribas-Carbo, M.; Fernandez Del-Saz, N.; Schwahn, K.; Nikoloski, Z.; Fernie, A. R.; Flexas, J.: Unravelling the invivo regulation and metabolic role of the alternative oxidase pathway in C-3 species under photoinhibitory conditions. New Phytologist 212 (1), S. 66 - 79 (2016)
  49. 49.
    Florez-Sarasa, I. D.; Noguchi, K.; Araujo, W.; Garcia-Nogales, A.; Fernie, A. R.; Flexas, J.; Ribas-Carbo, M.: Impaired cyclic electron flow around Photosystem I disturbs high-light respiratory metabolism. Plant Physiology 172 (4), S. 2176 - 2189 (2016)
  50. 50.
    Gago, J.; Daloso, D. M.; Figueroa, C. M.; Flexas, J.; Fernie, A. R.; Nikoloski, Z.: Relationships of Leaf Net Photosynthesis, Stomatal Conductance, and Mesophyll Conductance to Primary Metabolism: A Multispecies Meta-Analysis Approach. Plant Physiology 171 (1), S. 265 - 279 (2016)
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