Complete publication list

Publications of Alisdair Fernie

Journal Article (60)

  1. 1.
    Wen, W.; Brotman, Y.; Willmitzer, L.; Yan, J.; Fernie, A. R.: Broadening Our Portfolio in the Genetic Improvement of Maize Chemical Composition. Trends in Genetics 32 (8), pp. 459 - 469 (2016)
  2. 2.
    Li, Z.; Fernie, A. R.; Persson, S.: Transition of primary to secondary cell wall synthesis. SCIENCE BULLETIN 61 (11), pp. 838 - 846 (2016)
  3. 3.
    Bunik, V.; Mkrtchyan, G.; Grabarska, A.; Oppermann, H.; Daloso, D. M.; Araujo, W. L.; Juszczak, M.; Rzeski, W.; Bettendorff, L.; Fernie, A. R. et al.; Meixensberger, J.; Stepulak, A.; Gaunitz, F.: Inhibition of mitochondrial 2-oxoglutarate dehydrogenase impairs viability of cancer cells in a cell-specific metabolism-dependent manner. ONCOTARGET 7 (18), pp. 26400 - 26421 (2016)
  4. 4.
    Betti, M.; Bauwe, H.; Busch, F. A.; Fernie, A. R.; Keech, O.; Levey, M.; Ort, D. R.; Parry, M. A. J.; Sage, R.; Timm, S. et al.; Walker, B.; Weber, A. P. M.: Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement. Journal of Experimental Botany 67 (10-SI), pp. 2977 - 2988 (2016)
  5. 5.
    Gago, J.; Daloso, D. M.; Figueroa, C. M.; Flexas, J.; Fernie, A. R.; Nikoloski, Z.: Relationships of Leaf Net Photosynthesis, Stomatal Conductance, and Mesophyll Conductance to Primary Metabolism: A Multispecies Meta-Analysis Approach. Plant Physiology 171 (1), pp. 265 - 279 (2016)
  6. 6.
    Timm, S.; Florian, A.; Fernie, A. R.; Bauwe, H.: The regulatory interplay between photorespiration and photosynthesis. Journal of Experimental Botany 67 (10-SI), pp. 2923 - 2929 (2016)
  7. 7.
    Keunen, E.; Florez-Sarasa, I. D.; Obata, T.; Jozefczak, M.; Remans, T.; Vangronsveld, J.; Fernie, A. R.; Cuypers, A.: Metabolic responses of Arabidopsis thaliana roots and leaves to sublethal cadmium exposure are differentially influenced by ALTERNATIVE OXIDASE1a. Environmental and Experimental Botany 124, pp. 64 - 78 (2016)
  8. 8.
    Daloso, D. M.; Williams, T. C. R.; Antunes, W. C.; Pinheiro, D. P.; Mueller, C.; Loureiro, M. E.; Fernie, A. R.: Guard cell-specific upregulation of sucrose synthase 3 reveals that the role of sucrose in stomatal function is primarily energetic. New Phytologist 209 (4), pp. 1470 - 1483 (2016)
  9. 9.
    Filippou, P.; Antoniou, C.; Obata, T.; Van Der Kelen, K.; Harokopos, V.; Kanetis, L.; Aidinis, V.; Van Breusegem, F.; Fernie, A. R.; Fotopoulos, V.: Kresoxim-methyl primes Medicago truncatula plants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment. Journal of Experimental Botany 67 (5), pp. 1259 - 1274 (2016)
  10. 10.
    Sanglard, L. M. V. P.; Detmann, K. C.; Martins, S. C. V.; Teixeira, R. A.; Pereira, L. F.; Sanglard, M. L.; Fernie, A. R.; Araujo, W. L.; DaMatta, F. M.: The role of silicon in metabolic acclimation of rice plants challenged with arsenic. Environmental and Experimental Botany 123, pp. 22 - 36 (2016)
  11. 11.
    Liang, C.; Cheng, S.; Zhang, Y.; Sun, Y.; Fernie, A. R.; Kang, K.; Panagiotou, G.; Lo, C.; Lim, B. L.: Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination. BMC Plant Biology 16, 43 (2016)
  12. 12.
    Hu, C.; Tohge, T.; Chan, S.-A.; Song, Y.; Rao, J.; Cui, B.; Lin, H.; Wang, L.; Fernie, A. R.; Zhang, D. et al.; Shi, J.: Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development. Scientific Reports 6, 20942 (2016)
  13. 13.
    Colinas, M.; Eisenhut, M.; Tohge, T.; Pesquera, M.; Fernie, A. R.; Weber, A. P. M.; Fitzpatrick, T. B.: Balancing of B-6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis. The Plant Cell 28 (2), pp. 439 - 453 (2016)
  14. 14.
    Michaeli, S.; Galili, G.; Genschik, P.; Fernie, A. R.; Avin-Wittenberg, T.: Autophagy in Plants - What's New on the Menu? TRENDS IN PLANT SCIENCE 21 (2), pp. 134 - 144 (2016)
  15. 15.
    Moschen, S.; Bengoa Luoni, S.; Di Rienzo, J. A.; del Pilar Caro, M.; Tohge, T.; Watanabe, M.; Hollmann, J.; Gonzalez, S.; Rivarola, M.; Garcia-Garcia, F. et al.; Dopazo, J.; Esteban Hopp, H.; Hoefgen, R.; Fernie, A. R.; Paniego, N.; Fernandez, P.; Heinz, R. A.: Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower. Plant Biotechnology Journal 14 (2), pp. 719 - 734 (2016)
  16. 16.
    Aarabi, F.; Kusajima, M.; Tohge, T.; Konishi, T.; Gigolashvili, T.; Takamune, M.; Sasazaki, Y.; Watanabe, M.; Nakashita, H.; Fernie, A. R. et al.; Saito, K.; Takahashi, H.; Hubberten, H. M.; Hoefgen, R.; Maruyama-Nakashita, A.: Sulfur deficiency–induced repressor proteins optimize glucosinolate biosynthesis in plants. Science Advances 2 (10), e1601087 (2016)
  17. 17.
    Antonio, C.; Päpke, C.; Rocha, M.; Diab, H.; Limami, A. M.; Obata, T.; Fernie, A. R.; van Dongen, J.: Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution. Plant Physiolog 170 (1), pp. 43 - 56 (2016)
  18. 18.
    Basler, G.; Küken, A.; Fernie, A. R.; Nikoloski, Z.: Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence? Frontiers in Bioengineering and Biotechnology 4, 31 (2016)
  19. 19.
    Beleggia, R.; Rau, D.; Laido, G.; Platani, C.; Nigro, F.; Fragasso, M.; De Vita, P.; Scossa, F.; Fernie, A. R.; Nikoloski, Z. et al.; Papa, R.: Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels. Molecular Biology and Evolution 33 (7), pp. 1740 - 1753 (2016)
  20. 20.
    Bustamante, C. A.; Monti, L. L.; Gabilondo, J.; Scossa, F.; Valentini, G.; Budde, C. O.; Lara, M. V.; Fernie, A. R.; Drincovich, M. F.: Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits. Frontiers in Plant Science 7, 1478 (2016)
  21. 21.
    Coluccio Leskow, C.; Kamenetzky, L.; Guadalupe Dominguez, P.; Diaz Zirpolo, J. A.; Obata, T.; Costa, H.; Marti, M.; Taboga, O.; Keurentjes, J.; Sulpice, R. et al.; Ishihara, H.; Stitt, M.; Fernie, A. R.; Carrari, F.: Allelic differences in a vacuolar invertase affect Arabidopsis growth at early plant development. Journal of Experimental Botany 67 (14), pp. 4091 - 4103 (2016)
  22. 22.
    Czedik-Eysenberg, A.; Arrivault, S.; Lohse, M.A.; Feil, R.; Krohn, N.; Encke, B.; Nunes-Nesi, A.; Fernie, A. R.; Lunn, J. E.; Sulpice, R. et al.; Stitt, M.: The interplay between carbon availability and growth in different zones of the growing maize leaf. Plant Physiology 172 (2), pp. 943 - 967 (2016)
  23. 23.
    Daloso, D. M.; dos Anjos, L.; Fernie, A. R.: Roles of sucrose in guard cell regulation. New Phytologist 211 (3), pp. 809 - 818 (2016)
  24. 24.
    Del-Saz, N. F.; Florez-Sarasa, I. D.; Clemente-Moreno, M. J.; Mhadhbi, H.; Flexas, J.; Fernie, A. R.; Ribas-Carbó, M.: Salinity tolerance is related to cyanide-resistant alternative respiration in Medicago truncatula under sudden severe stress. Plant, Cell and Environment 39 (11), pp. 2361 - 2369 (2016)
  25. 25.
    Eggert, E.; Obata, T.; Gerstenberger, A.; Gier, K.; Brandt, T.; Fernie, A. R.; Schulze, W. X.; Kühn, C.: A sucrose transporter-interacting protein disulphide isomerase affects redox homeostasis and links sucrose partitioning with abiotic stress tolerance. Plant, Cell and Environment 39 (6), pp. 1366 - 1380 (2016)
  26. 26.
    Florez-Sarasa, I. D.; Ribas-Carbo, M.; Fernandez Del-Saz, N.; Schwahn, K.; Nikoloski, Z.; Fernie, A. R.; Flexas, J.: Unravelling the invivo regulation and metabolic role of the alternative oxidase pathway in C-3 species under photoinhibitory conditions. New Phytologist 212 (1), pp. 66 - 79 (2016)
  27. 27.
    Florez-Sarasa, I. D.; Noguchi, K.; Araujo, W.; Garcia-Nogales, A.; Fernie, A. R.; Flexas, J.; Ribas-Carbo, M.: Impaired cyclic electron flow around Photosystem I disturbs high-light respiratory metabolism. Plant Physiology 172 (4), pp. 2176 - 2189 (2016)
  28. 28.
    Galili, G.; Amir, R.; Fernie, A. R.: The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants. ANNUAL REVIEW OF PLANT BIOLOGY, pp. 153 - 178 (2016)
  29. 29.
    Garcia, V.; Bres, C.; Just, D.; Fernandez, L.; Tai, F. W. J.; Mauxion, J.-P.; Le Paslier, M.-C.; Bérard, A.; Brunel, D.; Aoki, K. et al.; Alseekh, S.; Fernie, A. R.; Fraser, P. D.; Rothan, &. C.: Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing. Nature Protocols 11, pp. 2401 - 2418 (2016)
  30. 30.
    Hoefler, S.; Lorenz, C.; Busch, T.; Brinkkoetter, M.; Tohge, T.; Fernie, A. R.; Braun, H.-P.; Hildebrandt, T. M.: Dealing with the sulfur part of cysteine: four enzymatic steps degrade l-cysteine to pyruvate and thiosulfate in Arabidopsis mitochondria. Physiologia Plantarum 157 (3), pp. 352 - 366 (2016)
  31. 31.
    Ishihara, H.; Tohge, T.; Viehover, P.; Fernie, A. R.; Weisshaar, B.; Stracke, R.: Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6. Journal of Experimental Botany 67 (5), pp. 1505 - 1517 (2016)
  32. 32.
    Iñigo, S.; Durand, A.N.; Ritter, A.; Le Gall, S.; Termathe, M.; Klassen, R.; Tohge, T.; De Coninck, B.; Van Leene, J.; De Clercq, R. et al.; Cammue, B.P.A.; Fernie, A. R.; Gevaert, K.; De Jaeger, G.; Leidel, S.A.; Schaffrath, R.; Van Lijsebettens, M.; Pauwels, L.; Goossens, A.: Glutaredoxin GRXS17 associates with the cytosolic iron-sulfur cluster assembly pathway. Plant Physiology 172 (2), pp. 858 - 873 (2016)
  33. 33.
    Kerchev, P.; Waszczak, C.; Lewandowska, A.; Willems, P.; Shapiguzov, A.; Li, Z.; Alseekh, S.; Mühlenbock, P.; Hoeberichts, F.A.; Huang, J. et al.; Van Der Kelen, K.; Kangasjärvi, J.; Fernie, A. R.; De Smet, R.; Van de Peer, Y.; Messens, J.; Van Breusegem, F.: Lack of GLYCOLATE OXIDASE1, but not GLYCOLATE OXIDASE2, attenuates the photorespiratory phenotype of CATALASE2-deficient Arabidopsis. Plant Physiology 171 (3), pp. 1704 - 1719 (2016)
  34. 34.
    Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Todaka, D.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants. Plant Biotechnology Journal (accepted)
  35. 35.
    Liu, Z.; Schneider, R.; Kesten, C.; Zhang, Y.; Somssich, M.; Zhang, Y.; Fernie, A. R.; Persson, S.: Cellulose-Microtubule Uncoupling Proteins Prevent Lateral Displacement of Microtubules during Cellulose Synthesis in Arabidopsis. Developmental Cell 38 (3), pp. 305 - 315 (2016)
  36. 36.
    Liu, Z.; Alseekh, S.; Brotman, Y.; Zheng, Y.; Fei, Z.; Tieman, D.; Giovannoni, J.; Fernie, A. R.; Klee, H.: Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL. Frontiers in Plant Science 7, 1671 (2016)
  37. 37.
    Lu, Y.; Yasuda, S.; Li, X.; Fukao, Y.; Tohge, T.; Fernie, A. R.; Matsukura, C.; Ezura, H.; Sato, T.; Yamaguchi, J.: Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.). Journal of Proteomics 143, pp. 254 - 264 (2016)
  38. 38.
    Medeiros, D. B.; Martins, S. C. V.; Cavalcanti, J. H. F.; Daloso, D. M.; Martinoia, E.; Nunes-Nesi, A.; DaMatta, F. M.; Fernie, A. R.; Araujo, W. L.: Enhanced Photosynthesis and Growth in atquac1 Knockout Mutants Are Due to Altered Organic Acid Accumulation and an Increase in Both Stomatal and Mesophyll Conductance. Plant Physiology 170 (1), pp. 86 - 101 (2016)
  39. 39.
    Montero, R.; Luisa Perez-Bueno, M.; Baron, M.; Florez-Sarasa, I. D.; Tohge, T.; Fernie, A. R.; El Aou Ouad, H.; Flexas, J.; Bota, J.: Alterations in primary and secondary metabolism in Vitis vinifera "Malvasia de Banyalbufar' upon infection withGrapevine leafroll-associated virus 3. Physiologia Plantarum 157 (4), pp. 442 - 452 (2016)
  40. 40.
    Monti, L. L.; Bustamante, C. A.; Osorio, S.; Gabilondo, J.; Borsani, J.; Lauxmann, M. A.; Maulion, E.; Valentini, G.; Budde, C. O.; Fernie, A. R. et al.; Lara, M. V.; Drincovich, M. F.: Metabolic profiling of a range of peach fruit varieties reveals high metabolic diversity and commonalities and differences during ripening. FOOD CHEMISTRY 190, pp. 879 - 888 (2016)
  41. 41.
    Obata, T.; Florian, A.; Timm, S.; Bauwe, H.; Fernie, A. R.: On the metabolic interactions of (photo)respiration. Journal of Experimental Botany 67 (10), pp. 3003 - 3014 (2016)
  42. 42.
    Orf, I.; Timm, S.; Bauwe, H.; Fernie, A. R.; Hagemann, M.; Kopka, J.; Nikoloski, Z.: Can cyanobacteria serve as a model of plant photorespiration? - a comparative meta-analysis of metabolite profiles. Journal of Experimental Botany 67 (10), pp. 2941 - 2952 (2016)
  43. 43.
    Pires, M. V.; Pereira Junior, A. A.; Medeiros, D. B.; Daloso, D. M.; Pham, P. A.; Barros, K. A.; Engqvist, M. K. M.; Florian, A.; Krahnert, I.; Maurino, V. G. et al.; Araujo, W. L.; Fernie, A. R.: The influence of alternative pathways of respiration that utilize branched-chain amino acids following water shortage in Arabidopsis. Plant, Cell and Environment 39 (6), pp. 1304 - 1319 (2016)
  44. 44.
    Ruprecht, C.; Mendrinna, A.; Tohge, T.; Sampathkumar, A.; Klie, S.; Fernie, A. R.; Nikoloski, Z.; Persson, S.; Mutwil, M.: FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants. Plant Physiology 170 (3), pp. 1878 - 1894 (2016)
  45. 45.
    Sajitz-Hermstein, M.; Töpfer, N.; Kleessen, S.; Fernie, A. R.; Nikoloski, Z.: iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models. Bioinformatics 32 (17), pp. i755 - i762 (2016)
  46. 46.
    Sarnowska, E.; Gratkowska, D. M.; Sacharowski, S. P.; Cwiek, P.; Tohge, T.; Fernie, A. R.; Siedlecki, J. A.; Koncz, C.; Sarnowski, T. J.: The Role of SWI/SNF Chromatin Remodeling Complexes in Hormone Crosstalk. Trends in Plant Science 21 (7), pp. 594 - 608 (2016)
  47. 47.
    Schulz, E.; Tohge, T.; Zuther, E.; Fernie, A. R.; Hincha, D. K.: Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana. Scientific Reports 6, 34027 (2016)
  48. 48.
    Schwahn, K.; Küken, A.; Kliebenstein, D.J.; Fernie, A. R.; Nikoloski, Z.: Observability of plant metabolic networks is reflected in the correlation of metabolic profiles. Plant Physiology 172 (2), pp. 1324 - 1333 (2016)
  49. 49.
    Scossa, F.; Brotman, Y.; de Abreu e Lima, F.; Willmitzer, L.; Nikoloski, Z.; Tohge, T.; Fernie, A. R.: Genomics-based strategies for the use of natural variation in the improvement of crop metabolism. Plant Science 242, pp. 47 - 64 (2016)
  50. 50.
    Shaik, S. S.; Obata, T.; Hebelstrup, K. H.; Schwahn, K.; Fernie, A. R.; Mateiu, R. V.; Blennow, A.: Starch Granule Re-Structuring by Starch Branching Enzyme and Glucan Water Dikinase Modulation Affects Caryopsis Physiology and Metabolism. PLoS One 11 (2), e0149613 (2016)
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