Publications of the Group

Journal Article (642)

  1. 1.
    Arrivault, S.; Obata, T.; Szecówka, M.; Mengin, V.; Guenther, M.; Höhne, M.; Fernie, A. R.; Stitt, M.: Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation. Journal of Experimental Botany 68, pp. 283 - 298 (2017)
  2. 2.
    Barros, J. A. S.; Cavalcanti, J. H. F.; Medeiros, D. B.; Nunes-Nesi, A.; Avin-Wittenberg, T.; Fernie, A. R.; Araujo, W. L.: Autophagy Deficiency Compromises Alternative Pathways of Respiration following Energy Deprivation in Arabidopsis thaliana. Plant Physiology 175 (1), pp. 62 - 76 (2017)
  3. 3.
    Bayer-Császár, E.; Haag, S.; Jörg, A.; Glass, F.; Härtel, B.; Obata, T.; Meyer, E. H.; Brennicke, A.; Takenaka, M.: The conserved domain in MORF proteins has distinct affinities to the PPR and E elements in PPR RNA editing factors. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1860 (8), pp. 813 - 828 (2017)
  4. 4.
    Borghi, M.; Fernie, A. R.; Schiestl, F. P.; Bouwmeester, H. J.: The Sexual Advantage of Looking, Smelling, and Tasting Good: The Metabolic Network that Produces Signals for Pollinators. Trends in Plant Science (2017)
  5. 5.
    Eisenhut, M.; Bräutigam, A.; Timm, S.; Florian, A.; Tohge, T.; Fernie, A. R.; Bauwe, H.; Weber, A. P.M.: Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered \CO2\ availability. Molecular Plant 10 (1), pp. 47 - 61 (2017)
  6. 6.
    Esteves-Ferreira, A. A.; Inaba, M.; Obata, T.; Fort, A.; Fleming, G. T. A.; Araujo, W. L.; Fernie, A. R.; Sulpice, R.: A Novel Mechanism, Linked to Cell Density, Largely Controls Cell Division in Synechocystis. Plant Physiology 174 (4), pp. 2166 - 2182 (2017)
  7. 7.
    Estrada-Johnson, E.; Csukasi, F.; Pizarro, C. M.; Vallarino, J. G.; Kiryakova, Y.; Vioque, A.; Brumos, J.; Medina-Escobar, N.; Botella, M. A.; Alonso, J. M. et al.; Fernie, A. R.; Sanchez-Sevilla, J. F.; Osorio, S.; Valpuesta, V.: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science (2017)
  8. 8.
    Estrada-Johnson, E.; Csukasi, F.; Pizarro, C. M.; Vallarino, J. G.; Kiryakova, Y.; Vioque, A.; Merchante, C.; Brumos, J.; Medina-Escobar, N.; Botella, M. A. et al.; Alonso, J. M.; Fernie, A. R.; Sánchez-Sevilla, J. F.; Osorio, S.; Valpuesta, V.: Corrigendum: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science 8, 1305 (2017)
  9. 9.
    Flores-Tornero, M.; Anoman, A. D.; Rosa-Tellez, S.; Toujani, W.; Weber, A. P. M.; Eisenhut, M.; Kurz, S.; Alseekh, S.; Fernie, A. R.; Munoz-Bertomeu, J. et al.; Ros, R.: Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants. The Plant Journal 89 (6), pp. 1146 - 1158 (2017)
  10. 10.
    Geigenberger, P.; Thormählen, I.; Daloso, D. M.; Fernie, A. R.: The Unprecedented Versatility of the Plant‎ Thioredoxin System. Trends in Plant Science 22 (3), pp. 249 - 262 (2017)
  11. 11.
    Goldy, C.; Svetaz, L. A.; Bustamante, C. A.; Allegrini, M.; Valentini, G. H.; Drincovich, M. F.; Fernie, A. R.; Lara, M. V.: Comparative proteomic and metabolomic studies between Prunus persica genotypes resistant and susceptible to Taphrina deformans suggest a molecular basis of resistance. Plant Physiology and Biochemistry 118, pp. 245 - 255 (2017)
  12. 12.
    Han, X.; Tohge, T.; Lalor, P.; Dockery, P.; Devaney, N.; Esteves-Ferreira, A. A.; Fernie, A. R.; Sulpice, R.: Phytochrome A and B Regulate Primary Metabolism in Arabidopsis Leaves in Response to Light. Frontiers in Plant Science 8, 1394 (2017)
  13. 13.
    Ishiga, Y.; Watanabe, M.; Ishiga, T.; Tohge, T.; Matsuura, T.; Ikeda , Y.; Hoefgen, R.; Fernie, A. R.; Mysore, K.S.: The SAL-PAP Chioroplast Retrograde Pathway Contributes to Plant Immunity by Regulating Glucosinolate Pathway and Phytohormone Signaling. Molecular Plant-Microbe Interactions 30 (10), pp. 829 - 841 (2017)
  14. 14.
    Ishihara, H.; Moraes, T. A.; Pyl, E. T.; Schulze, W. X.; Obata, T.; Scheffel, A.; Fernie, A. R.; Sulpice, R.; Stitt, M.: Growth rate correlates negatively with protein turnover in Arabidopsis accessions. The Plant Journal 91 (3), pp. 416 - 429 (2017)
  15. 15.
    Jin, M.; Zhang, X.; Zhao, M.; Deng, M.; Du, Y.; Zhou, Y.; Wang, S.; Tohge, T.; Fernie, A. R.; Willmitzer, L. et al.; Brotman, Y.; Yan, J.; Weiwei, W.: Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis. BMC Plant Biology 17 (1), 17 (2017)
  16. 16.
    Jorge, T. F.; Duro, N.; da Costa, M.; Florian, A.; Ramalho, J. C.; Ribeiro-Barros, A. I.; Fernie, A. R.; António, C.: GC-TOF-MS analysis reveals salt stress-responsive primary metabolites in Casuarina glauca tissues. Metabolomics 13 (8), 95 (2017)
  17. 17.
    Joshi, V.; Fernie, A. R.: Citrulline metabolism in plants. Amino Acids 49 (9), pp. 1543 - 1559 (2017)
  18. 18.
    Koehl, K. I.; Tohge, T.; Schöttler, M. A.: Performance of Arabidopsis thaliana under different light qualities: comparison of light-emitting diodes to fluorescent lamp. Functional Plant Biology 44 (7), pp. 727 - 738 (2017)
  19. 19.
    Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Todaka, D.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants. Plant Biotechnology Journal 15 (4), pp. 458 - 471 (2017)
  20. 20.
    Malinova, I.; Alseekh, S.; Feil, R.; Fernie, A. R.; Baumann, O.; Schöttler, M. A.; Lunn, J. E.; Fettke, J.: Starch synthase 4 and plastidal phosphorylase differentially affect starch granule number and morphology. Plant Physiology (2017)
  21. 21.
    Matthijs, M.; Fabris, M.; Obata, T.; Foubert, I.; Franco‐Zorrilla, J. M.; Solano, R.; Fernie, A. R.; Vyverman, W.; Goossens, A.: The transcription factor bZIP14 regulates the TCA cycle in the diatom Phaeodactylum tricornutum. EMBO Journal 36 (8), pp. 959 - 1116 (2017)
  22. 22.
    Menezes-Silva, P. E.; Sanglard, L. M. V. P.; Avila, R. T.; Morais, L. E.; Martins, S. C. V.; Nobres, P.; Patreze, C. M.; Ferreira, M. A.; Araujo, W. L.; Fernie, A. R. et al.; DaMatta, F. M.: Photosynthetic and metabolic acclimation to repeated drought events play key roles in drought tolerance in coffee. Journal of Experimental Botany 68 (15), pp. 4309 - 4322 (2017)
  23. 23.
    Modde, K.; Timm, S.; Florian, A.; Michl, K.; Fernie, A. R.; Bauwe, a. H.: High serine:glyoxylate aminotransferase activity lowers leaf daytime serine levels, inducing the phosphoserine pathway in Arabidopsis. Journal of Experimental Botany 68 (3), pp. 643 - 656 (2017)
  24. 24.
    Montero, R.; Ouad, H. E. A.; Pacifico, D.; Marzachi, C.; Castillo, N.; Garcia, E.; Del Saz, N. F.; Florez-Sarasa, I. D.; Flexas, J.; Bota, J.: Effects of Grapevine leafroll-associated virus 3 on the physiology in asymptomatic plants of Vitis vinifera. ANNALS OF APPLIED BIOLOGY 171 (2), pp. 155 - 171 (2017)
  25. 25.
    Nelson, D. R.; Khraiwesh, B.; Fu, W.; Alseekh, S.; Jaiswal, A.; Chaiboonchoe, A.; Hazzouri, K. M.; O'Connor, M. J.; Butterfoss, G. L.; Drou, N. et al.; Rowe, J. D.; Harb, J.; Fernie, A. R.; Gunsalus, K. C.; Salehi-Ashtiani, K.: The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization. eLife (2017)
  26. 26.
    Poplawski, P.; Tohge, T.; Boguslawska, J.; Rybicka, B.; Tanski, Z.; Trevino, V.; Fernie, A. R.; Piekielko-Witkowska, A.: Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1863 (3), pp. 744 - 752 (2017)
  27. 27.
    Robaina-Estévez, S.; Daloso, D. M.; Zhang, Y.; Fernie, A. R.; Nikoloski, Z.: Resolving the central metabolism of Arabidopsis guard cells. Scientific Reports 7, 8307 (2017)
  28. 28.
    Romero-Munar, A.; Del-Saz, N. F.; Ribas-Carbó, M.; Flexas, J.; Baraza, E.; Florez-Sarasa, I. D.; Fernie, A. R.; Gulías, J.: Arbuscular mycorrhizal symbiosis with Arundo donax decreases root respiration and increases both photosynthesis and plant biomass accumulation. Plant Cell Environment 40 (7), pp. 1115 - 1126 (2017)
  29. 29.
    Ru, L.; Osorio, S.; Wang, L.; Fernie, A. R.; Patrick, J.W.; Ruan, Y.-L.: Transcriptomic and metabolomics responses to elevated cell wall invertase activity during tomato fruit set. Journal of Experimental Botany 68 (15), pp. 4263 - 4279 (2017)
  30. 30.
    Shahnejat-Bushehri, S.; Allu, A. D.; Mehterov, N.; Thirumalaikumar, V. P.; Alseekh, S.; Fernie, A. R.; Mueller-Roeber, B.; Balazadeh, S.: Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Frontiers in Plant Science (2017)
  31. 31.
    Smirnova, J.; Fernie, A. R.; Spahn, C. M.T.; Steup, M.: Photometric assay of maltose and maltose-forming enzyme activity by using 4-alpha-glucanotransferase (DPE2) from higher plants. Analytical Biochemistry 532, pp. 72 - 82 (2017)
  32. 32.
    Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Arabidopsis fructokinases are important for seed oil accumulation and vascular development. Frontiers in Plant Science 7, 2047 (2017)
  33. 33.
    Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Corrigendum: Arabidopsis Fructokinases Are Important for Seed Oil Accumulation and Vascular Development. Frontiers in Plant Science 8, 303 (2017)
  34. 34.
    Svetaz, L. A.; Bustamante, C. A.; Goldy, C.; Rivero, N.; Müller, G. L.; Valentini, G. H.; Fernie, A. R.; Drincovich, M. F.; Lara, M. V.: Unraveling early events in the Taphrina deformans – Prunus persica interaction: an insight into the differential responses in resistant and susceptible genotypes. Plant, Cell and Environment (accepted)
  35. 35.
    Sweetlove, L. J.; Nielsen, J.; Fernie, A. R.: Engineering central metabolism - a grand challenge for plant biologists. The Plant Journal 90, pp. 749 - 763 (2017)
  36. 36.
    Tanou, G.; Minas, I. S.; Scossa, F.; Belghazi, M.; Xanthopoulou, A.; Ganopoulos, I.; Madesis, P.; Fernie, A. R.; Molassiotis, A.: Exploring priming responses involved in peach fruit acclimation to cold stress. SCIENTIFIC REPORT 7, 11358 (2017)
  37. 37.
    Todaka, D.; Zhao, Y.; Yoshida, T.; Kudo, M.; Kidokoro, S.; Mizoi, J.; Kodaira, K.-S.; Takebayashi, Y.; Kojima, M.; Sakakibara, H. et al.; Toyooka, K.; Sato, M.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions. The Plant Journal 90 (1), pp. 61 - 78 (2017)
  38. 38.
    Tohge, T.; Fernie, A. R.: Leveraging Natural Variance towards Enhanced Understanding of Phytochemical Sunscreens. Trends in Plant Science 22 (4), pp. 308 - 315 (2017)
  39. 39.
    Tohge, T.; de Souza, L. P.; Fernie, A. R.: Current understanding of the pathways of flavonoid biosynthesis in model and crop plants. Journal of Experimental Botany 68 (15), pp. 4013 - 4028 (2017)
  40. 40.
    Vallarino, J. G.; Yeats, T. H.; Maximova, E.; Rose, J. K.; Fernie, A. R.; Osorio, S.: Postharvest changes in LIN5-down-regulated plants suggest a role for sugar deficiency in cuticle metabolism during ripening. Phytochemistry 142, pp. 11 - 20 (2017)
  41. 41.
    Vidal-Meireles, A.; Neupert, J.; Zsigmond, L.; Rosado-Souza, L.; Kovács, L.; Nagy, V.; Galambos, A.; Fernie, A. R.; Bock, R.; Tóth, S. Z.: Regulation of ascorbate biosynthesis in green algae has evolved to enable rapid stress-induced response via the VTC2 gene encoding GDP-l-galactose phosphorylase. New Phytologist 214 (2), pp. 668 - 681 (2017)
  42. 42.
    Villanova, V.; Fortunato, A.E.; Singh, D.; Bo, D.D.; Conte, M.; Obata, T.; Jouhet, J.; Fernie, A. R.; Marechal, E.; Falciatore, A. et al.; Pagliardini, J.; Le Monnier, A.; Poolman, M.; Curien, G.; Petroutsos, D.; Finazzi, G.: Investigating mixotrophic metabolism in the model diatom phaeodactylum tricornutum. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 372 (1728), 20160404 (2017)
  43. 43.
    Yang, J.; Moeinzadeh, M.-H.; Kuhl, H.; Helmuth, J.; Xiao, P.; Haas, S.; Liu, G.; Zheng, J.; Sun, Z.; Fan, W. et al.; Deng, G.; Wang, H.; Hu, F.; Zhao, S.; Fernie, A. R.; Boerno, S.; Timmermann, B.; Zhang, P.; Vingron, M.: Haplotype-resolved sweet potato genome traces back its hexaploidization history. Nature Plants 3 (9), pp. 696 - 703 (2017)
  44. 44.
    Zhang, Y.; Beard, K. F. M.; Swart, C.; Bergmann, S.; Krahnert, I.; Nikoloski, Z.; Graf, A.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R. et al.; Obata, T.: Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle. Nature Communications (2017)
  45. 45.
    Zhu, F.-Y.; Chen, M.-X.; Ye, N.-H.; Shi, L.; Ma, K.-L.; Yang, J.-F.; Cao, Y.-Y.; Zhang, Y.; Yoshida, T.; Fernie, A. R. et al.; Fan, G.-Y.; Wen, B.; Zhou, R.; Liu, T.-Y.; Fan, T.; Gao, B.; Zhang, D.; Hao, G.-F.; Xiao, S.; Liu, Y.-G.; Zhang, J.: Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings. The Plant Journal 91 (3), pp. 518 - 533 (2017)
  46. 46.
    Zhu, X.; Yu, J.; Shi, J.; Tohge, T.; Fernie, A. R.; Meir, S.; Aharoni, A.; Xu, D.; Zhang, D.; Liang, W.: The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice. Journal of Integrative Plant Biology 59 (9), pp. 612 - 628 (2017)
  47. 47.
    de Souza, L. P.; Naake, T.; Tohge, T.; Fernie, A. R.: From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. GigaScience 6 (7) (accepted)
  48. 48.
    Aarabi, F.; Kusajima, M.; Tohge, T.; Konishi, T.; Gigolashvili, T.; Takamune, M.; Sasazaki, Y.; Watanabe, M.; Nakashita, H.; Fernie, A. R. et al.; Saito, K.; Takahashi, H.; Hubberten, H. M.; Hoefgen, R.; Maruyama-Nakashita, A.: Sulfur deficiency–induced repressor proteins optimize glucosinolate biosynthesis in plants. Science Advances 2 (10), e1601087 (2016)
  49. 49.
    Antonio, C.; Päpke, C.; Rocha, M.; Diab, H.; Limami, A. M.; Obata, T.; Fernie, A. R.; van Dongen, J.: Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution. Plant Physiolog 170 (1), pp. 43 - 56 (2016)
  50. 50.
    Baetz, U.; Eisenach, C.; Tohge, T.; Martinoia, E.; De Angeli, A.: Vacuolar chloride fluxes impact ion content and distribution during early salinity stress. Plant Physiology 172 (2), pp. 1167 - 1181 (2016)
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