Max Planck Institute of Molecular Plant Physiology

Publications of the Group

Journal Article (56)

1.

Journal Article

Benina, M.; Obata, T.; Mehterov, N.; Ivanov, I.; Petrov, V.; Toneva, V.; Fernie, A. R.; Gechev, T. S.: Comparative metabolic profiling of Haberlea rhodopensis, Thellungiella halophyla, and Arabidopsis thaliana exposed to low temperature. Frontiers in Plant Science 4, 499 (2013)

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2.

Journal Article

Malinova, I.; Mahlow, S.; Alseekh, S.; Orawetz, T.; Fernie, A. R.; Baumann, O.; Steup, M.; Fettke, J.: Double knock-out mutants of Arabidopsis thaliana grown under normal conditions reveal that the plastidial phosphorylase isozyme (PHS1) participates in transitory starch metabolism. Plant Physiology 164 (2), pp. 907 - 921 (2013)

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3.

Journal Article

Muñoz-Bertomeu , J.; Anoman, A.; Flores-Tornero, M.; Toujani, W.; Rosa-Téllez, S.; Fernie, A. R.; Roje, S.; Segura , J.; Ros, R.: The essential role of the phosphorylated pathway of serine biosynthesis in Arabidopsis. Plant Signaling & Behavior 8 (11), e27104 (2013)

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4.

Journal Article

Nardozza, S.; Boldingh, H. L.; Osorio, S.; Höhne, M.; Wohlers, M.; Gleave, A. P.; MacRae, E. A.; Richardson, A. C.; Atkinson, R. G.; Sulpice, R. et al.; Fernie, A. R.; Clearwater, M. J.: Metabolic analysis of kiwifruit (Actinidia deliciosa) berries from extreme genotypes reveals hallmarks for fruit starch metabolism. Journal of Experimental Botany 64 (16), pp. 5049 - 5063 (2013)

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5.

Journal Article

Toujani, W.; Munoz-Bertomeu, J.; Flores-Tornero, M.; Rosa-Tellez, S.; Anoman, A. D.; Alseekh, S.; Fernie, A. R.; Ros, R.: Functional Characterization of the Plastidial 3-Phosphoglycerate Dehydrogenase Family in Arabidopsis. Plant Physiology 163 (3), pp. 1164 - 1178 (2013)

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6.

Journal Article

Alseekh, S.; Ofner, I.; Pleban, T.; Tripodi, P.; Di Dato, F.; Cammareri, M.; Mohammad, A.; Grandillo, S.; Fernie, A. R.; Zamir, D.: Resolution by recombination: breaking up Solanum pennellii introgressions. Trends in Plant Science 18 (10), pp. 536 - 538 (2013)

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7.

Journal Article

Scarpeci, T. E.; Zanor, M. I.; Mueller-Roeber, B.; Valle, E. M.: Overexpression of AtWRKY30 enhances abiotic stress tolerance during early growth stages in Arabidopsis thaliana. Plant Molecular Biology 83 (3), pp. 265 - 277 (2013)

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8.

Journal Article

Schmidt, R.; Schippers, J. H. M.; Mieulet, D.; Obata, T.; Fernie, A. R.; Guiderdoni, E.; Mueller-Roeber, B.: MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways. Plant Journal 76 (2), pp. 258 - 273 (2013)

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9.

Journal Article

Lauxmann, M.; Borsani, J.; Osorio, S.; Lombardo, V. A.; Budde, C. O.; Bustamante, C. A.; Monti, L. L.; Andreo, C. S.; Fernie, A. R.; Drincovich, M. F. et al.; Lara, M. V.: Deciphering the metabolic pathways influencing heat and cold responses during post-harvest physiology of peach fruit. Plant, Cell and Environment 37 (3), pp. 601 - 616 (2013)

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10.

Journal Article

Osorio, S.; Scossa, F.; Fernie, A. R.: Molecular regulation of fruit ripening. Frontiers in Plant Science 4, 198 (2013)

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11.

Journal Article

Cascales-Minana, B.; Munoz-Bertomeu, J.; Flores-Tornero, M.; Anoman, A. D.; Pertusa, J.; Alaiz, M.; Osorio, S.; Fernie, A. R.; Segura, J.; Ros, R.: The Phosphorylated Pathway of Serine Biosynthesis Is Essential Both for Male Gametophyte and Embryo Development and for Root Growth in Arabidopsis. The Plant Cell 25 (6), pp. 2084 - 2101 (2013)

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12.

Journal Article

Chen, L.; Lee, J. H.; Weber, H.; Tohge, T.; Witt, S.; Roje, S.; Fernie, A. R.; Hellmann, H.: Arabidopsis BPM Proteins Function as Substrate Adaptors to a CULLIN3-Based E3 Ligase to Affect Fatty Acid Metabolism in Plants. The Plant Cell 25 (6), pp. 2253 - 2264 (2013)

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13.

Journal Article

Matsuba, Y.; Nguyen, T. T. H.; Wiegert, K.; Falar, V.; Gonzales-Vigil, E.; Leong, B.; Schaefer, P.; Kudrna, D.; Wing, R. A.; Bolger, A. M. et al.; Usadel, B.; Tissier, A.; Fernie, A. R.; Barry, C. S.; Pichersky, E.: Evolution of a Complex Locus for Terpene Biosynthesis in Solanum. The Plant Cell 25 (6), pp. 2022 - 2036 (2013)

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14.

Journal Article

Schmidt, R.; Mieulet, D.; Hubberten, H. M.; Obata, T.; Hoefgen, R.; Fernie, A. R.; Fisahn, J.; Segundo, B. S.; Guiderdoni, E.; Schippers, J. H. M. et al.; Mueller-Roeber, B.: SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species-Dependent Signaling during the Initial Response to Salt Stress in Rice. The Plant Cell 25 (6), pp. 2115 - 2131 (2013)

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15.

Journal Article

Finkemeier, I.; König, A.-C.; Heard, W.; Nunes-Nesi, A.; Pham, P. A.; Leister, D.; Fernie, A. R.; Sweetlove, L. J.: Transcriptomic Analysis of the Role of Carboxylic Acids in Metabolite Signaling in Arabidopsis Leaves. Plant Physiology 162 (1), pp. 239 - 253 (2013)

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16.

Journal Article

Toepfer, N.; Caldana, C.; Grimbs, S.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.: Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis. The Plant Cell 25 (4), pp. 1197 - 1211 (2013)

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17.

Journal Article

Araujo, W. L.; Trofimova, L.; Mkrtchyan, G.; Steinhauser, D.; Krall, L.; Graf, A.; Fernie, A. R.; Bunik, V. I.: On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism. Amino Acids 44 (2), pp. 683 - 700 (2013)

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18.

Journal Article

Antonio, C.; Mustafa, N. R.; Osorio, S.; Tohge, T.; Giavalisco, P.; Willmitzer, L.; Rischer, H.; Oksman-Caldentey, K. M.; Verpoorte, R.; Fernie, A. R.: Analysis of the interface between primary and secondary metabolism in Catharanthus roseus cell cultures using 13C-stable isotope feeding and coupled mass spectrometry. Molecular Plant 6 (2), pp. 581 - 584 (2013)

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19.

Journal Article

Archacki, R.; Buszewicz, D.; Sarnowski, T. J.; Sarnowska, E.; Rolicka, A. T.; Tohge, T.; Fernie, A. R.; Jikumaru, Y.; Kotlinski, M.; Iwanicka-Nowicka, R. et al.; Kalisiak, K.; Patryn, J.; Halibart-Puzio, J.; Kamiya, Y.; Davis, S. J.; Koblowska, M. K.; Jerzmanowski, A.: BRAHMA ATPase of the SWI/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis. PLoS One 8 (3), e58588 (2013)

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20.

Journal Article

Bocobza, S. E.; Malitsky, S.; Araujo, W. L.; Nunes-Nesi, A.; Meir, S.; Shapira, M.; Fernie, A. R.; Aharoni, A.: Orchestration of Thiamin Biosynthesis and Central Metabolism by Combined Action of the Thiamin Pyrophosphate Riboswitch and the Circadian Clock in Arabidopsis. The Plant Cell 25 (1), pp. 288 - 307 (2013)

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21.

Journal Article

Bromke, M. A.; Giavalisco, P.; Willmitzer, L.; Hesse, H.: Metabolic Analysis of Adaptation to Short-Term Changes in Culture Conditions of the Marine Diatom Thalassiosira pseudonana. PLoS One 8 (6), p. e67340 (2013)

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22.

Journal Article

Brotman, Y.; Landau, U.; Cuadros-Inostroza, A.; Tohge, T.; Fernie, A. R.; Chet, I.; Viterbo, A.; Willmitzer, L.: Trichoderma-Plant Root Colonization: Escaping Early Plant Defense Responses and Activation of the Antioxidant Machinery for Saline Stress Tolerance. PLoS Pathogens 9 (3), e1003221 (2013)

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23.

Journal Article

Caldana, C.; Li, Y.; Leisse, A.; Zhang, Y.; Bartholomaeus, L.; Fernie, A. R.; Willmitzer, L.; Giavalisco, P.: Systemic Analysis of Inducible Target of Rapamycin Mutants Reveal a General Metabolic Switch Controlling Growth in Arabidopsis thaliana. The Plant Journal 73 (6), pp. 897 - 909 (2013)

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24.

Journal Article

de Godoy, F.; Bermudez, L.; Lira, B. S.; de Souza, A. P.; Elbl, P.; Demarco, D.; Alseekh, S.; Insani, M.; Buckeridge, M.; Almeida, J. et al.; Grigioni, G.; Fernie, A. R.; Carrari, F.; Rossi, M.: Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. Journal of Experimental Botany 64 (8), pp. 2449 - 2466 (2013)

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25.

Journal Article

Detmann, K.; Araujo, W.; Martins, S.; Fernie, A. R.; Damatta, F.: Metabolic alterations triggered by silicon nutrition: Is there a signaling role for silicon? Plant Signaling & Behavior 8 (1), p. e22523 (2013)

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26.

Journal Article

Di Matteo, A.; Ruggieri, V.; Sacco, A.; Rigano, M.; Carriero, F.; Bolger, A.; Fernie, A. R.; Frusciante, L.; Barone, A.: Identification of candidate genes for phenolic accumulation in tomato fruit. Plant Science 205-206, pp. 87 - 96 (2013)

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27.

Journal Article

Do, P. T.; Degenkolbe, T.; Erban, A.; Heyer, A. G.; Kopka, J.; Koehl, K. I.; Hincha, D. K.; Zuther, E.: Dissecting Rice Polyamine Metabolism under Controlled Long-Term Drought Stress. PLoS One 8 (4), e60325 (2013)

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28.

Journal Article

Doerr, J. R.; Yu, Y.; Milanovic, M.; Beuster, G.; Zasada, C.; Daebritz, J. H. M.; Lisec, J.; Lenze, D.; Gerhardt, A.; Schleicher, K. et al.; Kratzat, S.; Purfuerst, B.; Walenta, S.; Mueller-Klieser, W.; Graeler, M.; Hummel, M.; Keller, U.; Buck, A. K.; Doerken, B.; Willmitzer, L.; Reimann, M.; Kempa, S.; Lee, S.; Schmitt, C. A.: Synthetic lethal metabolic targeting of cellular senescence in cancer therapy. Nature 501 (7467), pp. 421 - 425 (2013)

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29.

Journal Article

Dominguez, P. G.; Frankel, N.; Mazuch, J.; Balbo, I.; Iusem, N. D.; Fernie, A. R.; Carrari, F.: Asr1 Mediates Glucose-Hormone Crosstalk by Affecting Sugar Trafficking in Tobacco Plants. Plant Physiology 161 (3), pp. 1486 - 1500 (2013)

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30.

Journal Article

Fernie, A. R.; Morgan, J. A.: Analysis of metabolic flux using dynamic labeling and metabolic modeling. Plant, Cell and Environment 36 (9), pp. 1738 - 1750 (2013)

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31.

Journal Article

Fernie, A. R.; Tohge, T.: Plastic, fantastic! Phenotypic variance in the transcriptional landscape of the grape berry. Genome Biology 14 (6), 119 (2013)

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32.

Journal Article

Fernie, A. R.; Usadel, B.: The plant transcriptome – from integrating observations to models. Frontiers in Plant Science 4, p. 48 (2013)

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33.

Journal Article

Garchery, C.; Gest, N.; Do, P. T.; Alhagdow, M.; Baldet, P.; Menard, G.; Rothan, C.; Massot, C.; Gautier, H.; Aarrouf, J. et al.; Fernie, A. R.; Stevens, R.: A diminution in ascorbate oxidase activity affects carbon allocation and improves yield in tomato under water deficit. Plant Cell and Environment 36 (1), pp. 159 - 175 (2013)

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34.

Journal Article

Gupta, K. J.; Brotman, Y.; Segu, S.; Zeier, T.; Zeier, J.; Persijn, S. T.; Cristescu, S. M.; Harren, F. J.; Bauwe, H.; Fernie, A. R. et al.; Kaiser, W. M.; Mur, L. A.: The form of nitrogen nutrition affects resistance against Pseudomonas syringae pv. phaseolicola in tobacco. Journal of Experimental Botany 64 (2), pp. 553 - 868 (2013)

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35.

Journal Article

Koenig, D.; Jimenez-Gomez, J. M.; Kimura, S.; Fulop, D.; Chitwood, D. H.; Headland, L. R.; Kumar, R.; Covington, M. F.; Devisetty, U. K.; Tat, A. V. et al.; Tohge, T.; Bolger, A. M.; Schneeberger, K.; Ossowski, S.; Lanz, C.; Xiong, G.; Taylor-Teeples, M.; Brady, S. M.; Pauly, M.; Weigel, D.; Usadel, B.; Fernie, A. R.; Peng, J.; Sinha, N. R.; Maloof, J. N.: Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America 110 (28), pp. E2655 - E2662 (2013)

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36.

Journal Article

Luo, T.; Luo, S.; Araujo, W. L.; Schlicke, H.; Rothbart, M.; Yu, J.; Fan, T.; Fernie, A. R.; Grimm, B.; Luo, M.: Virus-induced gene silencing of pea CHLI and CHLD affects tetrapyrrole biosynthesis, chloroplast development and the primary metabolic network. Plant physiology and biochemistry 65C, pp. 17 - 26 (2013)

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37.

Journal Article

Merchante, C.; Vallarino, J. G.; Osorio, S.; Araguez, I.; Villarreal, N.; Ariza, M. T.; Martinez, G. A.; Medina-Escobar, N.; Civello, M. P.; Fernie, A. R. et al.; Botella, M. A.; Valpuesta, V.: Ethylene is involved in strawberry fruit ripening in an organ-specific manner. Journal of experimental botany 64 (14), pp. 4421 - 4439 (2013)

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38.

Journal Article

Morgan, M. J.; Osorio, S.; Gehl, B.; Baxter, C. J.; Kruger, N. J.; Ratcliffe, R. G.; Fernie, A. R.; Sweetlove, L. J.: Metabolic engineering of tomato fruit organic Acid content guided by biochemical analysis of an introgression line. Plant Physiology 161 (1), pp. 397 - 407 (2013)

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39.

Journal Article

Nunes-Nesi, A.; Araujo, W. L.; Obata, T.; Fernie, A. R.: Regulation of the mitochondrial tricarboxylic acid cycle. Current Opinion in Plant Biology 16 (3), pp. 335 - 343 (2013)

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40.

Journal Article

Obata, T.; Schoenefeld, S.; Krahnert, I.; Bergmann, S.; Scheffel, A.; Fernie, A.: Gas-Chromatography Mass-Spectrometry (GC-MS) Based Metabolite Profiling Reveals Mannitol as a Major Storage Carbohydrate in the Coccolithophorid Alga Emiliania huxleyi. Metabolites 3 (1), pp. 168 - 184 (2013)

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41.

Journal Article

Osorio, S.; Nunes-Nesi, A.; Stratmann, M.; Fernie, A. R.: Pyrophosphate levels strongly influence ascorbate and starch content in tomato fruit. Frontiers in Plant Science 4 (2013)

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42.

Journal Article

Osorio, S.; Vallarino, J. G.; Szecowka, M.; Ufaz, S.; Tzin, V.; Angelovici, R.; Galili, G.; Fernie, A. R.: Alteration of the interconversion of pyruvate and malate in the plastid or cytosol of ripening tomato fruit invokes diverse consequences on sugar but similar effects on cellular organic Acid, metabolism, and transitory starch accumulation. Plant Physiology 161 (2), pp. 628 - 643 (2013)

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43.

Journal Article

Pal, S. K.; Liput, M.; Piques, M.; Ishihara, H.; Obata, T.; Martins, M. C.; Sulpice, R.; van Dongen, J. T.; Fernie, A. R.; Yadav, U. P. et al.; Lunn, J. E.; Usadel, B.; Stitt, M.: Diurnal changes of polysome loading track sucrose content in the rosette of wildtype Arabidopsis and the starchless pgm mutant. Plant Physiology 162 (3), pp. 1246 - 1265 (2013)

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44.

Journal Article

Peterhansel, C.; Krause, K.; Braun, H. P.; Espie, G. S.; Fernie, A. R.; Hanson, D. T.; Keech, O.; Maurino, V. G.; Mielewczik, M.; Sage, R. F.: Engineering photorespiration: current state and future possibilities. Plant Biology 15 (4), pp. 754 - 758 (2013)

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45.

Journal Article

Quadrana, L.; Almeida, J.; Otaiza, S. N.; Duffy, T.; Correa da Silva, J. V.; de Godoy, F.; Asis, R.; Bermudez, L.; Fernie, A. R.; Carrari, F. et al.; Rossi, M.: Transcriptional regulation of tocopherol biosynthesis in tomato. Plant Molecular Biology 81 (3), pp. 309 - 325 (2013)

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46.

Journal Article

Riedelsheimer, C.; Brotman, Y.; Meret, M.; Melchinger, A. E.; Willmitzer, L.: The maize leaf lipidome shows multilevel genetic control and high predictive value for agronomic traits. Scientific Reports 3, 2479 (2013)

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47.

Journal Article

Sade, D.; Brotman, Y.; Eybishtz, A.; Cuadros-Inostroza, A.; Fernie, A. R.; Willmitzer, L.; Czosnek, H.: Involvement of the hexose transporter gene LeHT1 and of sugars in resistance of tomato to Tomato yellow leaf curl virus. Molecular Plant 6 (5), pp. 1707 - 1710 (2013)

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48.

Journal Article

Saito, K.; Yonekura-Sakakibara, K.; Nakabayashi, R.; Higashi, Y.; Yamazaki, M.; Tohge, T.; Fernie, A. R.: The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity. Plant Physiology and Biochemistry 72, pp. 21 - 34 (2013)

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49.

Journal Article

Spielbauer, G.; Li, L.; Romisch-Margl, L.; Do, P. T.; Fouquet, R.; Fernie, A. R.; Eisenreich, W.; Gierl, A.; Settles, A. M.: Chloroplast-localized 6-phosphogluconate dehydrogenase is critical for maize endosperm starch accumulation. Journal of Experimental Botany 64 (8), pp. 2231 - 2242 (2013)

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50.

Journal Article

Sulpice, R.; Nikoloski, Z.; Tschoep, H.; Antonio, C.; Kleeson, S.; Lahrlimi, A.; Selbig, J.; Hirofumi, I.; Gibon, Y.; Fernie, A. R. et al.; Stitt, M.: Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions. Plant Physiology 162 (1), pp. 347 - 363 (2013)

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