Publications of S. Alseekh

Aarabi, F.; Ghigi, A.; Wijesingha Ahchige, M.; Bulut, M.; Geigenberger, P.; Neuhaus, H. E.; Sampathkumar, A.; Alseekh, S.; Fernie, A. R.: Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant Physiology 193 (3), pp. 2037 - 2054 (2023)

Bulut, M.; Alseekh, S.; Fernie, A. R.: Natural variation of respiration-related traits in plants. Plant Physiology 191 (4), pp. 2120 - 2132 (2023)

Bellucci, E.; Benazzo, A.; Xu, C.; Bitocchi, E.; Rodriguez, M.; Alseekh, S.; Di Vittori, V.; Gioia, T.; Neumann, K.; Cortinovis, G. et al.; Frascarelli, G.; Murube, E.; Trucchi, E.; Nanni, L.; Ariani, A.; Logozzo, G.; Shin, J. H.; Liu, C.; Jiang, L.; Ferreira, J. J.; Campa, A.; Attene, G.; Morrell, P. L.; Bertorelle, G.; Graner, A.; Gepts, P.; Fernie, A. R.; Jackson, S. A.; Papa, R.: Selection and adaptive introgression guided the complex evolutionary history of the European common bean. Nature Communications 14, 1908 (2023)

Sun, Y.; Alseekh, S.; Fernie, A. R.: Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants. GCB Bioenergy 29 (2), pp. 477 - 504 (2023)

Zhang, Y.; Wiese, L.; Fang, H.; Alseekh, S.; de Souza, L. P.; Scossa, F.; Molloy, J.; Christmann, M.; Fernie, A. R.: Synthetic biology identifies the minimal gene set required for Paclitaxel biosynthesis in a plant chassis. Molecular Plant (2023)

Zhu, F.; Jadhav, S. S.; Tohge, T.; Salem, M. A.; Li, J. M.; Giovannoni, J. J.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. Plant Physiology 190 (1), pp. 250 - 266 (2022)

Tabatabaei, I.; Alseekh, S.; Shahid, M.; Leniak, E.; Wagner, M.; Mahmoudi, H.; Thushar, S.; Fernie, A. R.; Murphy, K. M.; Schmöckel, S. M. et al.; Tester, M.; Mueller-Roeber, B.; Skirycz, A.; Balazadeh, S.: The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9 (1), 323 (2022)

Fernie, A. R.; Alseekh, S.: Metabolomic selection–based machine learning improves fruit taste prediction. Proceedings of the National Academy of Sciences of the United States of America 199 (9), e2201078119 (2022)

Fernie, A. R.; Alseekh, S.: Unravelling the molecular networks that regulate kiwifruit flavor. New Phytologist 233 (1), pp. 8 - 10 (2022)

Zhu, F.; Alseekh, S.; Wen, W.; Cheng, Y.; Fernie, A. R.: Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming. Autophagy 18 (2), pp. 457 - 458 (2021)

Zhu, F.; Alseekh, S.; Koper, K.; Tong, H.; Nikoloski, Z.; Naake, T.; Liu, H.; Yan, J.; Brotman, Y.; Wen, W. et al.; Maeda, H.; Cheng, Y.; Fernie, A. R.: Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell 34 (1), pp. 557 - 578 (2021)

Alseekh, S.; Aharoni, A.; Brotman, Y.; Contrepois, K.; D’Auria, J.; Ewald, J.; C. Ewald, J.; Fraser, P. D.; Giavalisco, P.; Hall, R. D. et al.; Heinemann, M.; Link, H.; Luo, J.; Neumann, S.; Nielsen, J.; de Souza, L. P.; Saito, K.; Sauer, U.; Schroeder, F. C.; Schuster, S.; Siuzdak, G.; Skirycz, A.; Sumner, L. W.; Snyder, M. P.; Tang, H.; Tohge, T.; Wang, Y.; Wen, W.; Wu, S.; Xu, G.; Zamboni, N.; Fernie, A. R.: Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18 (7), pp. 747 - 756 (2021)

Moreno, J.C.; Rojas, B.E.; Vicente, R.; Gorka, M.; Matz, T.; Kosmacz, M.; Peralta-Ariza, J.S.; Zhang, Y.; Alseekh, S.; Childs, D. et al.; Luzarowski, M.; Nikoloski, Z.; Zarivach, R.; Walther, D.; Hartman, M.D.; Figueroa, C.M.; Iglesias, A.A.; Fernie, A. R.; Skirycz, A.: Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal 40 (15), e106800 (2021)

de Souza, L. P.; Alseekh, S.; Scossa, F.; Fernie, A. R.: Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods 18, pp. 733 - 746 (2021)

Sreenivasulu, N.; Alseekh, S.; Tiozon, R. N.; Graner, A.; Martin, C.; Fernie, A. R.: Metabolic Signatures from Genebank Collections: An Underexploited Resource for Human Health? (2023)

Alseekh, S.; Scossa, F.; Wen, W.; Luo, J.; Yan, J.; Beleggia, R.; Klee, H. J.; Huang, S.; Papa, R.; Fernie, A. R.: Domestication of Crop Metabolomes: Desired and Unintended Consequences. (2021)