Publications of A. R. Fernie

Fernie, A. R.; Willmitzer, L.: Update on tuber formation, dormancy and sprouting. Molecular and biochemical triggers of potato tuber development. Plant Physiology 127 (4), pp. 1459 - 1465 (2001)

Roessner, U.; Luedemann, A.; Brust, D.; Fiehn, O.; Linke, T.; Willmitzer, L.; Fernie, A. R.: Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13 (1), pp. 11 - 29 (2001)

Roessner, U.; Willmitzer, L.; Fernie, A. R.: High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems. Identification of phenocopies. Plant Physiology 127 (3), pp. 749 - 764 (2001)

Trethewey, R. N.; Fernie, A. R.; Bachmann, A.; Fleischer-Notter, H.; Geigenberger, P.; Willmitzer, L.: Expression of a bacterial sucrose phosphorylase in potato tubers results in a glucose-independent induction of glycolysis. Plant, Cell & Environment 24 (3), pp. 357 - 365 (2001)

Geigenberger, P.; Fernie, A. R.; Gibon, Y.; Christ, M.; Stitt, M.: Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers. Journal of Biological Chemistry 381 (8), pp. 723 - 740 (2000)

Tauberger, E.; Fernie, A. R.; Emmermann, M.; Renz, A.; Kossmann, J.; Willmitzer, L.; Trethewey, R. N.: Antisense inhibition of plastidial phosphoglucomutase provides compelling evidence that potato tuber amyloplasts import carbon from the cytosol in the form of glucose-6-phosphate. Plant Journal 23 (1), pp. 43 - 53 (2000)

Hempstead, P. D.; Yewdall, S. J.; Fernie, A. R.; Lawson, D. M.; Artymiuk, P. J.; Rice, D. W.; Ford, G. C.; Harrison, P. M.: Comparison of the three-dimensional structures of recombinant human H and horse L ferritins at high resolution. Journal of Molecular Biology 268 (2), pp. 424 - 448 (1997)

Fernie, A. R.; Bauwe, H.; Weber, A. P.M. (Eds.): Photorespiration: Methods and Protocols. Humanapress, New York (2017), 274 pp.

Baginsky, S.; Fernie, A. R.: Plant Systems Biology. Birkhäuser Verlag, Basel, SUI (2007)

Wen, W.; Jia, X.; Zhang, W.; Jiang, X.; Fernie, A. R.: Understanding carotenoid biosynthetic pathway control points using metabolomic analysis and natural genetic variation. In: Methods in Enzymology, Vol. 671, pp. 127 - 151 (2022)

Zhu, F.; Fernie, A. R.; Scossa, F. (Central Metabolism, Department Willmitzer, Max Planck Institute of Molecular Plant Physiology, Max Planck Society), F.: Preparation and Curation of Omics Data for Genome-Wide Association Studies. In: Methods in Molecular Biology, Vol. 2481 (Eds. Torkamabeh, D.; Belzile, F.). Humana, New York, NY (2022)

Borghi, M.; de Souza, L. P.; Fernie, A. R.: Measurement of Flower Metabolite Concentrations Using Gas Chromatography–Mass Spectrometry and High-Performance Liquid Chromatography–Mass Spectrometry. In: Methods in Molecular Biology, Vol. 2484 (Ed. Lambing, C.) (2022)

Alseekh, S.; Fernie, A. R.: Using Metabolomics to Assist Plant Breeding. In: Crop Breeding: Genetic Improvement Methods, Vol. 2264, pp. 33 - 46 (Ed. Tripodi, P.). Springer US, New York, NY (2021)

Bauwe, H.; Fernie, A. R.: With a Little Help from My Friends: The Central Role of Photorespiration and Related Metabolic Processes in the Acclimation and Adaptation of Plants to Oxygen and to Low-CO2 Stress. In: Photosynthesis, Respiration, and Climate Change, Vol. 48, pp. 355 - 385 (Eds. Becklin, K. M.; Ward, J. K.; Way, D. A.). Springer, Cham (2021)

Naake, T.; Gaquerel, E.; Fernie, A. R.: Annotation of Specialized Metabolites from High-Throughput and High Resolution Mass Spectrometry Metabolomics. In: Computational Methods and Data Analysis for Metabolomics, pp. 209 - 225 (Ed. Li, S.). Springer US, New York, NY (2020)

Llorente, C.; Jimenez, R.; Brotman, Y.; Fernie, A. R.; Sreenivasulu, N.; Jackie: Rice Grain Quality Benchmarking Through Profiling of Volatiles and Metabolites in Grains Using Gas Chromatography Mass Spectrometry. In: Rice Grain Quality: Methods and Protocols, Vol. 1892, pp. 187 - 199 (Ed. Sreenivasulu, N.). Springer New York, New York, NY (2019)

Alseekh, S.; Wu, S.; Brotman, Y.; Fernie, A. R.: Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance. In: Methods in Molecular Biology, Vol. 1778, pp. 33 - 46 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)

de Souza, L. P.; Fernie, A. R.; Tohge, T.: Carbon Atomic Survey for Identification of Selected Metabolic Fluxes. In: Methods in Molecular Biology, Vol. 1778, pp. 59 - 70 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)

Vallarino, J. G.; Erban, A.; Fehrle, I.; Fernie, A. R.; Kopka, J.; Osorio, S.: Acquisition of Volatile Compounds by Gas Chromatography–Mass Spectrometry (GC-MS). In: Methods in Molecular Biology, Vol. 1778, pp. 225 - 240 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)

Watanabe, M.; Tohge, T.; Balazadeh, S.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive Metabolomics Studies of Plant Developmental Senescence. In: Plant Senescence: Methods and Protocols, pp. 339 - 358 (Ed. Guo, Y.). Springer New York, New York, NY (2018)