Publications of C. Caldana

Journal Article (52)

41.
Journal Article
Rohrmann, J.; Tohge, T.; Alba, R.; Osorio, S.; Caldana, C.; McQuinn, R.; Arvidsson, S.; van der Merwe, M. J.; Riano-Pachon, D. M.; Mueller-Roeber, B. et al.; Fei, Z.; Nunes-Nesi, A.; Giovannoni, J. J.; Fernie, A. R.: Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68 (6), pp. 999 - 1013 (2011)
42.
Journal Article
Balazadeh, S.; Siddiqui, H.; Allu, A. D.; Matallana-Ramirez, L. P.; Caldana, C.; Mehrnia, M.; Zanor, M. I.; Koehler, B.; Mueller-Roeber, B.: A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence. Plant Journal 62 (2), pp. 250 - 264 (2010)
43.
Journal Article
Espinoza, C.; Degenkolbe, T.; Caldana, C.; Zuther, E.; Leisse, A.; Willmitzer, L.; Hincha, D. K.; Hannah, M. A.: Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis. PLoS One 5 (11), p. e14101 (2010)
44.
Journal Article
Hannah, M. A.; Caldana, C.; Steinhauser, D.; Balbo, I.; Fernie, A. R.; Willmitzer, L.: Combined Transcript and Metabolite Profiling of Arabidopsis Grown under Widely Variant Growth Conditions Facilitates the Identification of Novel Metabolite-Mediated Regulation of Gene Expression. Plant Physiology 152 (4), pp. 2120 - 2129 (2010)
45.
Journal Article
Massonnet, C.; Vile, D.; Fabre, J.; Hannah, M. A.; Caldana, C.; Lisec, J.; Beemster, G. T. S.; Meyer, R. C.; Messerli, G.; Gronlund, J. T. et al.; Perkovic, J.; Wigmore, E.; May, S.; Bevan, M. W.; Meyer, C.; Rubio-Diaz, S.; Weigel, D.; Micol, J. L.; Buchanan-Wollaston, V.; Fiorani, F.; Walsh, S.; Rinn, B.; Gruissem, W.; Hilson, P.; Hennig, L.; Willmitzer, L.; Granier, C.: Probing the Reproducibility of Leaf Growth and Molecular Phenotypes: A Comparison of Three Arabidopsis Accessions Cultivated in Ten Laboratories. Plant Physiology 152 (4), pp. 2142 - 2157 (2010)
46.
Journal Article
Robles, P.; Fleury, D.; Candela, H.; Cnops, G.; Alonso-Peral, M. M.; Anami, S.; Falcone, A.; Caldana, C.; Willmitzer, L.; Ponce, M. R. et al.; van Lijsebettens, M.; Micol, J. L.: The RON1/FRY1/SAL1 Gene Is Required for Leaf Morphogenesis and Venation Patterning in Arabidopsis. Plant Physiology 152 (3), pp. 1357 - 1372 (2010)
47.
Journal Article
Cuadros-Inostroza, A.; Caldana, C.; Redestig, H.; Kusano, M.; Lisec, J.; Pena-Cortes, H.; Willmitzer, L.; Hannah, M. A.: TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics 10, p. 428 (2009)
48.
Journal Article
Caldana, C.; Scheible, W.-R.; Mueller-Roeber, B.; Ruzicic, S.: A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plant Methods 3, p. 7 (2007)
49.
Journal Article
Mueller-Roeber, B.; Riano-Pachon, D.M.; Ruzicic, S.; Skirycz, A.; Caldana, C.; Witt, I.; Zanor, M.-I.: Pflanzliche Regulatorproteine. Bioforum 6, pp. 32 - 34 (2005)
50.
Journal Article
Thieme, F.; Koebnik, R.; Bekel, T.; Berger, C.; Boch, J.; Buttner, D.; Caldana, C.; Gaigalat, L.; Goesmann, A.; Kay, S. et al.; Kirchner, O.; Lanz, C.; Linke, B.; McHardy, A.; Meyer, F.; Mittenhuber, G.; Nies, D.; Niesbach-Klosgen, U.; Patschkowski, T.; Ruckert, C.; Rupp, O.; Schneiker, S.; Schuster, S.; Vorholter, F.; Weber, E.; Puhler, A.; Bonas, U.; Bartels, D.; Kaiser, O.: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. Journal of Bacteriology 187 (21), pp. 7254 - 7266 (2005)
51.
Journal Article
de Souza, A.; Takita, M.; Coletta, H.; Caldana, C.; Yanai, G.; Muto, N.; de Oliveira, R.; Nunes, L.; Machado, M.: Gene expression profile of the plant pathogen Xylella fastidiosa during biofilm formation in vitro. FEMS Microbiology Letters 237 (2), pp. 341 - 353 (2004)
52.
Journal Article
de Souza, A.; Takita, M.; Coletta, H.; Caldana, C.; Goldman, G.; Yanai, G.; Muto, N.; de Oliveira, R.; Nunes, L.; Machado, M.: Analysis of gene expression in two growth states of Xylella fastidiosa and its relationship with pathogenicity. Molecular Plant-Microbe Interactions 16 (10), pp. 867 - 875 (2003)

Book Chapter (4)

53.
Book Chapter
Martins, M.C.M.; Mafra, V.; Monte-Bello, C.C.; Caldana, C.: The Contribution of Metabolomics to Systems Biology: Current Applications Bridging Genotype and Phenotype in Plant Science. In: Advances in experimental medicine and biology, Vol. 1346, pp. 91 - 105 (Ed. Winck, F. W.) (2022)
54.
Book Chapter
Hoffmam, Z. B.; da Silva, V. C. H.; Martins, M. C. M.; Caldana, C.: Applications of Mass Spectrometry in Synthetic Biology. In: Mass Spectrometry in Chemical Biology: Evolving Applications, pp. 159 - 172. Royal Society of Chemistry, Cambridge (2018)
55.
Book Chapter
Martins, M. C. M.; Caldana, C.; Wolf, L. D.; de Abreu, L. G. F.: The Importance of Experimental Design, Quality Assurance, and Control in Plant Metabolomics Experiments. In: Methods in Molecular Biology, Vol. 1778, pp. 3 - 18 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)
56.
Book Chapter
Ricci-Silva, M.; Vaz, B.; Vasconcelos, G.; Romão, W.; Aricetti, J.; Caldana, C.; Abdelnur, P.: Mass Spectrometry for Metabolomics and Biomass Composition Analyses. In: Analytical Techniques and Methods for Biomass, pp. 115 - 141. Springer International Publishing Switzerland, Cham (2016)

Proceedings (1)

57.
Proceedings
TOR Signaling and Nutrient Sensing. (2016)

Conference Paper (1)

58.
Conference Paper
Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Vol. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, September 26, 2007 - September 28, 2007. (2007)

Meeting Abstract (2)

59.
Meeting Abstract
Gliwicka, M.; Balazadeh, S.; Caldana, C.; Mueller-Roeber, B.; Gaj, M. D.: The use of multi-qPCR platform and tan1 mutant in identification of TF genes involved in somatic embryogenesis in Arabidopsis multi-qPCR platform and tan1 mutant in identification of TF genes involved in somatic embryogenesis in Arabidopsis. In Acta Biologica Cracoviensia Series Botanica, 51, p. 17 - 17. (2009)
60.
Meeting Abstract
Willmitzer, L.; Degenkolbe, T.; Caldana, C.; Hannah, M.: Systems response to environmental conditions as studied by metabolome analysis. In New Biotechnology, 25, p. S317 - S317. (2009)
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