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Fuehrs, H.; Goetze, S.; Specht, A.; Erban, A.; Gallien, S.; Heintz, D.; van Dorsselaer, A.; Kopka, J.; Braun, H. P.; Horst, W. J.: Characterization of leaf apoplastic peroxidases and metabolites in Vigna unguiculata in response to toxic manganese supply and silicon. Journal of Experimental Botany 60 (6), pp. 1663 - 1678 (2009)

Hernandez, G.; Valdes-Lopez, O.; Ramirez, M.; Goffard, N.; Weiller, G.; Aparicio-Fabre, R.; Fuentes, S. I.; Erban, A.; Kopka, J.; Udvardi, M. K. et al.; Vance, C. P.: Global Changes in the Transcript and Metabolic Profiles during Symbiotic Nitrogen Fixation in Phosphorus-Stressed Common Bean Plants. Plant Physiology 151 (3), pp. 1221 - 1238 (2009)

Pedreschi, R.; Franck, C.; Lammertyn, J.; Erban, A.; Kopka, J.; Hertog, M.; Verlinden, B.; Nicolai, B.: Metabolic profiling of 'Conference' pears under low oxygen stress. Postharvest Biology and Technology 51 (2), pp. 123 - 130 (2009)

van Dongen, J. T.; Frohlich, A.; Ramirez-Aguilar, S. J.; Schauer, N.; Fernie, A. R.; Erban, A.; Kopka, J.; Clark, J.; Langer, A.; Geigenberger, P.: Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants. Annals of Botany 103 (2), pp. 269 - 280 (2009)

Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), pp. 4214 - 4225 (2008)

Levine, L. H.; Kasahara, H.; Kopka, J.; Erban, A.; Fehrle, I.; Kaplan, F.; Zhao, W.; Littell, R. C.; Guy, C.; Wheeler, R. et al.; Sager, J.; Mills, A.; Levine, H. G.: Physiologic and metabolic responses of wheat seedlings to elevated and super-elevated carbon dioxide. Advances in Space Research 42 (12), pp. 1917 - 1928 (2008)

Lüdemann, A.; Strassburg, K.; Erban, A.; Kopka, J.: TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments. Bioinformatics 24 (5), pp. 732 - 737 (2008)

Sanchez, D. H.; Lippold, F.; Redestig, H.; Hannah, M. A.; Erban, A.; Kraemer, U.; Kopka, J.; Udvardi, M. K.: Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus. Plant Journal 53 (6), pp. 973 - 987 (2008)

Strehmel, N.; Hummel, J.; Erban, A.; Strassburg, K.; Kopka, J.: Retention index thresholds for compound matching in GC-MS metabolite profiling. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences 871 (2), pp. 182 - 190 (2008)

Hannah, M. A.; Kraemer, K. M.; Geffroy, V.; Kopka, J.; Blair, M. W.; Erban, A.; Vallejos, C. E.; Heyer, A. G.; Sanders, F. E.; Millner, P. A. et al.; Pilbeam, D. J.: Hybrid weakness controlled by the dosage-dependent lethal (DL) gene system in common bean (Phaseolus vulgaris) is caused by a shoot-derived inhibitory signal leading to salicylic acid-associated root death. New Phytologist 176 (3), pp. 537 - 549 (2007)

Hernandez, G.; Ramirez, M.; Valdes-Lopez, O.; Tesfaye, M.; Graham, M. A.; Czechowski, T.; Schlereth, A.; Wandrey, M.; Erban, A.; Cheung, F. et al.; Wu, H. C.; Lara, M.; Town, C. D.; Kopka, J.; Udvardi, M. K.; Vance, C. P.: Phosphorus stress in common bean: Root transcript and metabolic responses. Plant Physiology 144 (2), pp. 752 - 767 (2007)

Kempa, S.; Rozhon, W.; Samaj, J.; Erban, A.; Baluska, F.; Becker, T.; Haselmayer, J.; Schleiff, E.; Kopka, J.; Hirt, H. et al.; Jonak, C.: A plastid-localized glycogen synthase kinase 3 modulates stress tolerance and carbohydrate metabolism. Plant Journal 49 (6), pp. 1076 - 1090 (2007)

Leple, J. C.; Dauwe, R.; Morreel, K.; Storme, V.; Lapierre, C.; Pollet, B.; Naumann, A.; Kang, K. Y.; Kim, H.; Ruel, K. et al.; Lefebvre, A.; Joseleau, J. P.; Grima-Pettenati, J.; De Rycke, R.; Andersson-Gunneras, S.; Erban, A.; Fehrle, I.; Petit-Conil, M.; Kopka, J.; Polle, A.; Messens, E.; Sundberg, B.; Mansfield, S. D.; Ralph, J.; Pilate, G.; Boerjan, W.: Downregulation of cinnamoyl-coenzyme a reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure. Plant Cell 19 (11), pp. 3669 - 3691 (2007)

Engelsberger, W. R.; Erban, A.; Kopka, J.; Schulze, W. X.: Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites. Plant Methods 2, p. 14 (2006)

Niehl, A.; Lacomme, C.; Erban, A.; Kopka, J.; Kraemer, U.; Fisahn, J.: Systemic Potato virus X infection induces defence gene expression and accumulation of beta-phenylethylamine-alkaloids in potato. Functional Plant Biology 33 (6), pp. 593 - 604 (2006)

Birkemeyer, C.; Luedemann, A.; Wagner, C.; Erban, A.; Kopka, J.: Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling. Trends in Biotechnology 23 (1), pp. 28 - 33 (2005)

Erban, A.; Martinez-Seidel, F.; Rajarathinam, Y.; Dethloff, F.; Orf, I.; Fehrle, I.; Alpers, J.; Beine-Golovchuk, O.; Kopka, J.: Multiplexed Profiling and Data Processing Methods to Identify Temperature-Regulated Primary Metabolites Using Gas Chromatography Coupled to Mass Spectrometry. In: Plant Cold Acclimation: Methods in molecular biology, Vol. 2156, pp. 203 - 239 (Eds. Hincha, D. K.; Zuther, E.) (2020)

Vallarino, J. G.; Erban, A.; Fehrle, I.; Fernie, A. R.; Kopka, J.; Osorio, S.: Acquisition of Volatile Compounds by Gas Chromatography–Mass Spectrometry (GC-MS). In: Methods in Molecular Biology, Vol. 1778, pp. 225 - 240 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)

Watanabe, M.; Tohge, T.; Balazadeh, S.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive Metabolomics Studies of Plant Developmental Senescence. In: Plant Senescence: Methods and Protocols, pp. 339 - 358 (Ed. Guo, Y.). Springer New York, New York, NY (2018)

Zuther, E.; Lee, Y. P.; Erban, A.; Kopka, J.; Hincha, D. K.: Natural Variation in Freezing Tolerance and Cold Acclimation Response in Arabidopsis thaliana and Related Species. In: Survival Strategies in Extreme Cold and Desiccation: Adaptation Mechanisms and Their Applications, pp. 81 - 98 (Eds. Iwaya-Inoue, M.; Sakurai, M.; Uemura, M.). Springer Singapore, Singapore (2018)