Publications of Y. Gibon

Blaesing, O. E., Gibon, Y., Guenther, M., Hoehne, M., Morcuende, R., Osuna, D., Thimm, O., Usadel, B., Scheible, W.-R. & Stitt, M. Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 17, 3257–3281 (2005).

Kopka, J., Schauer, N., Krueger, S., Birkemeyer, C., Usadel, B., Bergmueller, E., Doermann, P., Weckwerth, W., Gibon, Y., Stitt, M., Willmitzer, L., Fernie, A. R. & Steinhauser, D. GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21, 1635–1638 (2005).

Studart-Guimaraes, C., Gibon, Y., Frankel, N., Wood, C. C., Zanor, M. I., Fernie, A. R. & Carrari, F. Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato. Plant Molecular Biology 59, 781–791 (2005).

Bender-Machado, L., Bauerlein, M., Carrari, F., Schauer, N., Lytovchenko, A., Gibon, Y., Kelly, A. A., Loureiro, M. E., Muller-Rober, B., Willmitzer, L. & Fernie, A. R. Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis. Plant Molecular Biology 55, 645–662 (2004).

Gibon, Y., Blaesing, O. E., Hannemann, J., Carillo, P., Hoehne, M., Hendriks, J. H. M., Palacios, N., Cross, J., Selbig, J. & Stitt, M. A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16, 3304–3325 (2004).

Gibon, Y., Blaesing, O. E., Palacios-Rojas, N., Pankovic, D., Hendriks, J. H. M., Fisahn, J., Hoehne, M., Guenther, M. & Stitt, M. Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the following light period. Plant Journal 39, 847–862 (2004).

Thimm, O., Blaesing, O., Gibon, Y., Nagel, A., Meyer, S., Krueger, P., Selbig, J., Mueller, L. A., Rhee, S. Y. & Stitt, M. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant Journal 37, 914–939 (2004).

Carrari, F., Nunes-Nesi, A., Gibon, Y., Lytovchenko, A., Loureiro, M. E. & Fernie, A. R. Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato. Plant Physiology 133, 1322–1335 (2003).

Hendriks, J. H. M., Kolbe, A., Gibon, Y., Stitt, M. & Geigenberger, P. ADP-glucose pyrophosphorylase is activated by posttranslational redox-modification in response to light and to sugars in leaves of Arabidopsis and other plant species. Plant Physiology 133, 838–849 (2003).

Stitt, M., Blaesing, O., Gibon, Y., Thimm, O. & Scheible, W.-R. Das Problem der Fuelle. Funktionelle Genomik von Kohlenhydrat- und Stickstoff-Stoffwechsel in Arabidopsis. GenomXpress 3, 2–5 (2003).

Gibon, Y., Vigeolas, H., Tiessen, A., Geigenberger, P. & Stitt, M. Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system. Plant Journal 30, 221–235 (2002).

Tiessen, A., Hendriks, J. H. M., Stitt, M., Branscheid, A., Gibon, Y., Farre, E. M. & Geigenberger, P. Starch synthesis in potato tubers is regulated by post-translational redox modification of ADP-glucose pyrophosphorylase: A novel regulatory mechanism linking starch synthesis to the sucrose supply. Plant Cell 14, 2191–2213 (2002).

Thimm, O., Blaesing, O., Usadel, B. & Gibon, Y. in Advances in Plant Research - Control of Primary Metabolism in Plants (eds. Plaxton, W. & MacManus, M.) (Blackwell Publ., 2005). at <http://hdl.handle.net/11858/00-001M-0000-0014-2B0D-8>

Scholz, M., Gibon, Y., Stitt, M. & Selbig, J. Independent Component Analysis of starch deficient pgm mutants. in German Conference on Bioinformatics 95–104 (2004). at <http://hdl.handle.net/11858/00-001M-0000-0014-2C7A-A>

Stitt, M., Mueller, C., Matt, P., Gibon, Y., Carillo, P., Morcuende, R., Scheible, W.-R. & Krapp, A. Steps towards an integrated view of nitrogen metabolism. in 6th International Symposium on Inorganic Nitrogen Assimilation 959–970 (2002). doi:10.1093/jexbot/53.370.959

Meyer, R. C., Lisec, J., Sulpice, R., Steinfath, M., Gaertner, T., Becher, M., Witucka-Wall, H., von Korff, M., Gunther, T., Childs, L., Scharr, H., Walter, A., Torjek, O., Fiehn, O., Schurr, U., Schmid, K., Walther, D., Gibon, Y., Selbig, J., Stitt, M., Willmitzer, L. & Altmann, T. Analysis of Arabidopsis natural variation in biomass accumulation and metabolism. in New Biotechnology 25, S307–S307 (2009).

Kopka, J., Fernie, A. R., Weckwerth, W., Gibon, Y. & Stitt, M. Metabolite profiling in plant biology: platforms and destinations. Genome Biology 5, 109 (2004).

Poorter, H., Fiorani, F., Stitt, M., Schurr, U., Finck, A., Gibon, Y., Usadel, B., Munns, R., Atkin, O. K., Tardieu, F. & Pons, T. L. The art of growing plants for experimental purposes: a practical guide for the plant biologist Review. Functional Plant Biology 39, 821–838 (2012).

Mueller, B., Pantin, F., Genard, M., Turc, O., Freixes, S., Piques, M. & Gibon, Y. Water deficits uncouple growth from photosynthesis, increase C content, and modify the relationships between C and growth in sink organs. Journal of Experimental Botany 62, 1715–1729 (2011).

Tschoep, H., Gibon, Y., Carillo, P., Armengaud, P., Szecowka, M., Nunes-Nesi, A., Fernie, A. R., Koehl, K. I. & Stitt, M. Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis. Plant, Cell and Environment 32, 300–318 (2009).