Publications of A. R. Fernie

Farre, E. M., Tech, S., Trethewey, R. N., Fernie, A. R. & Willmitzer, L. Subcellular pyrophosphate metabolism in developing tubers of potato (Solanum tuberosum). Plant Molecular Biology 62, 165–179 (2006).

Hackel, A., Schauer, N., Carrari, F., Fernie, A. R., Grimm, B. & Kuhn, C. Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways. Plant Journal 45, 180–192 (2006).

Hajirezaei, M.-R., Biemelt, S., Peisker, M., Lytovchenko, A., Fernie, A. R. & Sonnewald, U. The influence of cytosolic phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPC) on potato tuber metabolism. Journal of Experimental Botany 57, 2363–2377 (2006).

Ishizaki, K., Schauer, N., Larson, T. R., Graham, I. A., Fernie, A. R. & Leaver, C. J. The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness. Plant Journal 47, 751–760 (2006).

Joshi, V., Laubengayer, K. M., Schauer, N., Fernie, A. R. & Jander, G. Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool. Plant Cell 18, 3564–3575 (2006).

Junker, B. H., Wuttke, R., Nunes-Nesi, A., Steinhauser, D., Schauer, N., Buessis, D., Willmitzer, L. & Fernie, A. R. Enhancing vacuolar sucrose cleavage within the developing potato tuber has only minor effects on metabolism. Plant and Cell Physiology 47, 277–289 (2006).

Kolbe, A., Oliver, S. N., Fernie, A. R., Stitt, M., van Dongen, J. T. & Geigenberger, P. Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiology 141, 412–422 (2006).

Lisec, J., Schauer, N., Kopka, J., Willmitzer, L. & Fernie, A. R. Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols 1, 387–396 (2006).

Palmieri, L., Arrigoni, R., Blanco, E., Carrari, F., Zanor, M. I., Studart-Guimaraes, C., Fernie, A. R. & Palmieri, F. Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization. Plant Physiology 142, 855–865 (2006).

Schauer, N., Semel, Y., Roessner, U., Gur, A., Balbo, I., Carrari, F., Pleban, T., Perez-Melis, A., Bruedigam, C., Kopka, J., Willmitzer, L., Zamir, D. & Fernie, A. R. Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nature Biotechnology 24, 447–454 (2006).

Steinfath, M., Repsilber, D., Hische, M., Schauer, N., Fernie, A. R. & Selbig, J. Metabolite profiles as a reflection of physiological status - a methodological validation. Journal of Integrative Bioinformatics 3, 2–18 (2006).

Sweetlove, L. J., Lytovchenko, A., Morgan, M., Nunes-Nesi, A., Taylor, N. L., Baxter, C. J., Eickmeier, I. & Fernie, A. R. Mitochondrial uncoupling protein is required for efficient photosynthesis. Proceedings of the National Academy of Sciences of the United States of America 103, 19587–19592 (2006).

Tieman, D., Taylor, M., Schauer, N., Fernie, A. R., Hanson, A. D. & Klee, H. J. Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde. Proceedings of the National Academy of Sciences of the United States of America 103, 8287–8292 (2006).

Urbanczyk-Wochniak, E., Usadel, B., Thimm, O., Nunes-Nesi, A., Carrari, F., Davy, M., Blaesing, O., Kowalczyk, M., Weicht, D., Polinceusz, A., Meyer, S., Stitt, M. & Fernie, A. R. Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60, 773–792 (2006).

Wagner, S., Bernhardt, A., Leuendorf, J. E., Drewke, C., Lytovchenko, A., Mujahed, N., Gurgui, C., Frommer, W. B., Leistner, E., Fernie, A. R. & Hellmann, H. Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis. Plant Cell 18, 1722–1735 (2006).

Baxter, C. J., Carrari, F., Bauke, A., Overy, S., Hill, S. A., Quick, W. P., Fernie, A. R. & Sweetlove, L. J. Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids. Plant and Cell Physiology 46, 425–437 (2005).

Carrari, F., Coll-Garcia, D., Schauer, N., Lytovchenko, A., Palacios-Rojas, N., Balbo, I., Rosso, M. & Fernie, A. R. Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth. Plant Physiology 137, 70–82 (2005).

Davies, H. V., Shepherd, L. V. T., Burrell, M. M., Carrari, F., Urbanczyk-Wochniak, E., Leisse, A., Hancock, R. D., Taylor, M., Viola, R., Ross, H., McRae, D., Willmitzer, L. & Fernie, A. R. Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology 46, 1103–1115 (2005).

Fernie, A. R., Geigenberger, P. & Stitt, M. Flux an important, but neglected, component of functional glenomics. Current Opinion in Plant Biology 8, 174–182 (2005).

Geigenberger, P., Regierer, B., Nunes-Nesi, A., Leisse, A., Urbanczyk-Wochniak, E., Springer, F., van Dongen, J. T., Kossmann, J. & Fernie, A. R. Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance. Plant Cell 17, 2077–2088 (2005).