Publications of A. R. Fernie

Rohrmann, J., Tohge, T., Alba, R., Osorio, S., Caldana, C., McQuinn, R., Arvidsson, S., van der Merwe, M. J., Riano-Pachon, D. M., Mueller-Roeber, B., Fei, Z., Nunes-Nesi, A., Giovannoni, J. J. & Fernie, A. R. Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68, 999–1013 (2011).

Skirycz, A., Memmi, S., de Bodt, S., Maleux, K., Obata, T., Fernie, A. R., Devreese, B. & Inze, D. A Reciprocal (15)N-Labeling Proteomic Analysis of Expanding Arabidopsis Leaves Subjected to Osmotic Stress Indicates Importance of Mitochondria in Preserving Plastid Functions. Journal of Proteome Research 10, 1018–1029 (2011).

Steinbrenner, A. D., Gomez, S., Osorio, S., Fernie, A. R. & Orians, C. M. Herbivore-Induced Changes in Tomato (Solanum lycopersicum) Primary Metabolism: A Whole Plant Perspective. Journal of Chemical Ecology 37, 1294–1303 (2011).

Steinhauser, M.-C., Steinhauser, D., Gibon, Y., Bolger, M., Arrivault, S., Usadel, B., Zamir, D., Fernie, A. R. & Stitt, M. Identification of Enzyme Activity Quantitative Trait Loci in a Solanum lycopersicum X Solanum pennellii Introgression Line Population. Plant Physiology 157, 998–1014 (2011).

Timm, S., Florian, A., Jahnke, K., Nunes-Nesi, A., Fernie, A. R. & Bauwe, H. The Hydroxypyruvate-Reducing System in Arabidopsis: Multiple Enzymes for the Same End. Plant Physiology 155, 694–705 (2011).

Tohge, T., Mettler, T., Arrivault, S., Carroll, A. J., Stitt, M. & Fernie, A. R. From models to crop species: caveats and solutions for translational metabolomics. Frontiers in Plant Science 2, 61 (2011).

Tohge, T., Ramos, M. S., Nunes-Nesi, A., Mutwil, M., Giavalisco, P., Steinhauser, D., Schellenberg, M., Willmitzer, L., Persson, S., Martinoia, E. & Fernie, A. R. Toward the storage metabolome: profiling the barley vacuole. Plant Physiology 157, 1469–1482 (2011).

Zabalza, A., Orcaray, L., Igal, M., Schauer, N., Fernie, A. R., Geigenberger, P., van Dongen, J. T. & Royuela, M. Unraveling the role of fermentation in the mode of action of acetolactate synthase inhibitors by metabolic profiling. Journal of Plant Physiology 168, 1568–1575 (2011).

Araujo, W. L., Ishizaki, K., Nunes-Nesi, A., Larson, T. R., Tohge, T., Krahnert, I., Witt, S., Obata, T., Schauer, N., Graham, I. A., Leaver, C. J. & Fernie, A. R. Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria. The Plant Cell 22, 1549–1563 (2010).

Bazzini, A. A., Asis, R., Gonzalez, V., Bassi, S., Conte, M., Soria, M., Fernie, A. R., Asurmendi, S. & Carrari, F. miSolRNA: A tomato micro RNA relational database. Bmc Plant Biology 10, 240 (2010).

Brown, N. J., Palmer, B. G., Stanley, S., Hajaji, H., Janacek, S. H., Astley, H. M., Parsley, K., Kajala, K., Quick, W. P., Trenkamp, S., Fernie, A. R., Maurino, V. G. & Hibberd, J. M. C4 acid decarboxylases required for C4 photosynthesis are active in the mid-vein of the C3 species Arabidopsis thaliana, and are important in sugar and amino acid metabolism. The Plant Journal 61, 122–133 (2010).

George, G. M., van der Merwe, M. J., Nunes-Nesi, A., Bauer, R., Fernie, A. R., Kossmann, J. & Lloyd, J. R. Virus-Induced Gene Silencing of Plastidial Soluble Inorganic Pyrophosphatase Impairs Essential Leaf Anabolic Pathways and Reduces Drought Stress Tolerance in Nicotiana benthamiana. Plant Physiology 154, 55–66 (2010).

Gur, A., Osorio, S., Fridman, E., Fernie, A. R. & Zamir, D. hi2-1, A QTL which improves harvest index, earliness and alters metabolite accumulation of processing tomatoes. Theoretical and Applied Genetics 121, 1587–1599 (2010).

Hannah, M. A., Caldana, C., Steinhauser, D., Balbo, I., Fernie, A. R. & Willmitzer, L. Combined Transcript and Metabolite Profiling of Arabidopsis Grown under Widely Variant Growth Conditions Facilitates the Identification of Novel Metabolite-Mediated Regulation of Gene Expression. Plant Physiology 152, 2120–2129 (2010).

Huang, T. F., Tohge, T., Lytovchenko, A., Fernie, A. R. & Jander, G. Pleiotropic physiological consequences of feedback-insensitive phenylalanine biosynthesis in Arabidopsis thaliana. The Plant Journal 63, 823–835 (2010).

Kamenetzky, L., Asis, R., Bassi, S., de Godoy, F., Bermudez, L., Fernie, A. R., van Sluys, M. A., Vrebalov, J., Giovannoni, J. J., Rossi, M. & Carrari, F. Genomic Analysis of Wild Tomato Introgressions Determining Metabolism- and Yield-Associated Traits. Plant Physiology 152, 1772–1786 (2010).

Leuendorf, J. E., Osorio, S., Szewczyk, A., Fernie, A. R. & Hellmann, H. Complex Assembly and Metabolic Profiling of Arabidopsis thaliana Plants Overexpressing Vitamin B(6) Biosynthesis Proteins. Molecular Plant 3, 890–903 (2010).

Lohse, M., Nunes-Nesi, A., Krueger, P., Nagel, A., Hannemann, J., Giorgi, F. M., Childs, L., Osorio, S., Walther, D., Selbig, J., Sreenivasulu, N., Stitt, M., Fernie, A. R. & Usadel, B. Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis. Plant Physiology 153, 642–651 (2010).

Maloney, G. S., Kochevenko, A., Tieman, D. M., Tohge, T., Krieger, U., Zamir, D., Taylor, M. G., Fernie, A. R. & Klee, H. J. Characterization of the Branched-Chain Amino Acid Aminotransferase Enzyme Family in Tomato. Plant Physiology 153, 925–936 (2010).

Mathieu-Rivet, E., Gevaudant, F., Sicard, A., Salar, S., Do, P. T., Mouras, A., Fernie, A. R., Gibon, Y., Rothan, C., Chevalier, C. & Hernould, M. Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato. The Plant Journal 62, 727–741 (2010).