Publications of the Group

Orsi, E.; Claassens, N. J.; Nikel, P. I.; Lindner, S. N.: Growth-coupled selection of synthetic modules to accelerate cell factory development. Nature Communications 12 (1), 5295 (2021)

Bouzon, M.; Döring, V.; Dubois, I.; Berger, A.; Stoffel, G.M.M.; Ramirez, L. C.; Meyer, S.N.; Fouré, M.; Roche, D.; Perret, A. et al.; Erb, T.J.; Bar-Even, A.; Lindner, S. N.: Change in cofactor specificity of oxidoreductases by adaptive evolution of an escherichia coli nadph-auxotrophic strain. mBio 12 (4), e00329-21 (2021)

Krahn, I.; Bonder, D.; Torregrosa-Barragan, L.; Stoppel, D.; Krause, J. P.; Rosenfeldt, N.; Meiswinkel, T. M.; Seibold, G. M.; Wendisch, V. F.; Lindner, S. N.: Evolving a New Efficient Mode of Fructose Utilization for Improved Bioproduction in Corynebacterium glutamicum. Frontiers in Bioengineering and Biotechnology 9, 669093 (2021)

Leger, D.; Matassa, S.; Noor, E.; Shepon, A.; Milo, R.; Bar-Even, A.: Photovoltaic-driven microbial protein production can use land and sunlight more efficiently than conventional crops. Proceedings of the National Academy of Sciences of the United States of America 118 (26), e2015025118 (2021)

Scheffen, M.; Marchal, D.G.; Beneyton, T.; Schuller, S.K.; Klose, M.; Diehl, C.; Lehmann, J.; Pfister, P.; Carrillo, M.; He, H. et al.; Aslan, S.; Cortina, N.S.; Claus, P.; Bollschweiler, D.; Baret, J.-C.; Schuller, J.M.; Zarzycki, J.; Bar-Even, A.; Erb, T.J.: A new-to-nature carboxylation module to improve natural and synthetic CO2 fixation. Nature Catalysis 4, pp. 105 - 115 (2021)

Cotton, C. A. R.; Bernhardsgrütter, I.; He, H.; Burgener, S.; Schulz, L.; Paczia, N.; Dronsella, B.; Erban, A.; Toman, S.; Dempfle, M. et al.; de Maria, A.; Kopka, J.; Lindner, S. N.; Erb, T. J.; Bar-Even, A.: Underground isoleucine biosynthesis pathways in E. coli. eLife 9, e54207 (2020)

Ramirez, L. C.; Calvo Tusell, C.; Stoffel, G. M. M.; Lindner, S. N.; Osuna, S.; Erb, T. J.; Garcia-Borràs, M.; Bar-Even, A.; Acevedo-Rocha, C. G.: In vivo selection for formate dehydrogenases with high efficiency and specificity towards NADP+. ACS Catalysis 10, pp. 7512 - 7525 (2020)

Aslan, S.; Noor, E.; Benito-Vaquerizo, S.; Lindner, S. N.; Bar-Even, A.: Design and engineering of E. coli metabolic sensor strains with a wide sensitivity range for glycerate. Metabolic Engineering 57, pp. 96 - 109 (2020)

Claassens, N. J.; Bordanaba-Florit, G.; Cotton, C. A. R.; de Maria, A.; Finger-Bou, M.; Friedeheim, L.; Giner-Laguarda, N.; Munar-Palmer, M.; Newell, W.; Scarinci, G. et al.; Verbunt, J.; de Vries, S.T.; Yilmaz, S.; Bar-Even, A.: Replacing the Calvin cycle with the reductive glycine pathway in Cupriavidus necator. Metabolic Engineering 62, pp. 30 - 41 (2020)

Claassens, N. J.; Scarinci, G.; Fischer, A.; Flamholz, A.I.; Newell, W.; Frielingsdorf, S.; Lenz, O.; Bar-Even, A.: Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle. Proceedings of the National Academy of Sciences of the United States of America 117 (36), pp. 22452 - 22461 (2020)

Cotton, C. A. R.; Claassens, N. J.; Benito-Vaquerizo, S.; Bar-Even, A.: Renewable methanol and formate as microbial feedstocks. Current Opinion in Biotechnology 62, pp. 168 - 180 (2020)

de Almeida, C.P.; de Carvalho Paulino, J.F.; Carbonell, S.A.M.; Chiorato, A.F.; Song, Q.; Rainaldi, V.; Rodriguez, M.; Papa, R.; Benchimol-Reis, L.L.: Genetic diversity, population structure, and andean introgression in Brazilian common bean cultivars after half a century of genetic breeding. Genes 11 (11), 1298 (2020)

Flamholz, A.I.; Dugan, E.; Blikstad, C.; Gleizer, S.; Ben-Nissan, R.; Amram, S.; Antonovsky, N.; Ravishankar, S.; Noor, E.; Bar-Even, A. et al.; Milo, R.; Savage, D.F.: Functional reconstitution of a bacterial co2 concentrating mechanism in E. coli. eLife 9, e59882, pp. 1 - 57 (2020)

He, H.; Höper, R.; Dodenhöft, M.; Marlière, P.; Bar-Even, A.: An optimized methanol assimilation pathway relying on promiscuous formaldehyde-condensing aldolases in E. coli. Metabolic Engineering 60, pp. 1 - 13 (2020)

He, H.; Noor, E.; Ramos-Parra, P. A.; García-Valencia, L. E.; Patterson, J. A.; Díaz de la Garza, R. I.; Hanson, A. D.; Bar-Even, A.: In Vivo Rate of Formaldehyde Condensation with Tetrahydrofolate. Metabolites 10 (2), 65 (2020)

Kim, S.; Lindner, S. N.; Aslan, S.; Yishai, O.; Wenk, S.; Schann, K.; Bar-Even, A.: Growth of E. coli on formate and methanol via the reductive glycine pathway. Nature Chemical Biology 16 (5), pp. 538 - 545 (2020)

Lindner, S. N.; Aslan, S.; Mueller, A.; Hoffart, E.; Behrens, P.; Edlich-Muth, C.; Blombach, B.; Bar-Even, A.: A synthetic glycerol assimilation pathway demonstrates biochemical constraints of cellular metabolism. The FEBS Journal 287 (1), pp. 160 - 172 (2020)

Orsi, E.; Beekwilder, J.; Eggink, G.; Kengen, S.W.M.; Weusthuis, R.A.: The transition of Rhodobacter sphaeroides into a microbial cell factory. Biotechnology and Bioengineering 118 (2), pp. 531 - 541 (2020)

Patterson, J.A.; He, H.; Folz, J.S.; Li, Q.; Wilson, M.A.; Fiehn, O.; Bruner, S.D.; Bar-Even, A.; Hanson, A.D.: Thioproline formation as a driver of formaldehyde toxicity in Escherichia coli. Biochemical Journal 477 (9), pp. 1745 - 1757 (2020)

Sánchez-Andrea, I.; Guedes, I.A.; Hornung, B.; Boeren, S.; Lawson, C.E.; Sousa, D.Z.; Bar-Even, A.; Claassens, N. J.; Stams, A.J.M.: The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans. Nature Communications 11 (1), 5090 (2020)