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151.

Journal Article

Ponnu, J.; Schlereth, A.; Zacharaki, V.; Dzialo, M.; Abel, C.; Feil, R.; Schmid, M.; Wahl, V.: The Trehalose 6-Phosphate Pathway Impacts Vegetative Phase Change in Arabidopsis thaliana. The Plant Journal (accepted)

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152.

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Pott, D. M.; de Abreu e Lima, F.; Soria, C.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.; Osorio, S.; Vallarino, J. G.: Metabolic reconfiguration of strawberry physiology in response to postharvest practices. Food Chemistry 321, 126747 (2020)

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153.

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Pott, D. M.; Vallarino, J. G.; Cruz-Rus, E.; Willmitzer, L.; Sanchez-Sevilla, J. F.; Amaya, I.; Osorio, S.: Genetic analysis of phenylpropanoids and antioxidant capacity in strawberry fruit reveals mQTL hotspots and candidate genes. Scientific Reports 10 (1), 20197 (2020)

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154.

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Pott, D. M.; Vallarino, J. G.; Osorio, S.: Metabolite Changes during Postharvest Storage: Effects on Fruit Quality Traits. Metabolites (accepted)

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155.

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Qiu, H.; Zhu, X.; Wan, H.; Xu, L.; Zhang, Q.; Hou, P.; Fan, Z.; Lyu, Y.; Ni, D.; Usadel, B. et al.; Fernie, A. R.; Wen, W.: Parallel Metabolomic and Transcriptomic Analysis Reveals Key Factors for Quality Improvement of Tea Plants. Journal of Agricultural and Food Chemistry 68 (19), pp. 5483 - 5495 (2020)

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156.

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Qiu, Y.; Köhler, C.: Mobility connects: transposable elements wire new transcriptional networks by transferring transcription factor binding motifs. Biochemical Society Transactions 48 (3), pp. 1005 - 1017 (2020)

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157.

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Razaghi-Moghadam, Z.; Nikoloski, Z.: Supervised Learning of Gene Regulatory Networks. Current Protocols in Plant Biology 5 (2), e20106 (2020)

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158.

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Richter, A. S.; Tohge, T.; Fernie, A. R.; Grimm, B.: The genomes uncoupled -dependent signalling pathway coordinates plastid biogenesis with the synthesis of anthocyanins. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375 (1801), 20190403 (2020)

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159.

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Robaina-Estévez, S.; Nikoloski, Z.: Flux-based hierarchical organization of Escherichia coli’s metabolic network. PLoS Computational Biology 16 (4), e1007832 (2020)

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160.

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Rödiger, A.; Galonska, J.; Bergner, E.; Agne, B.; Helm, S.; Alseekh, S.; Fernie, A. R.; Thieme, D.; Hoehenwarter, W.; Hause, G. et al.; Pfannschmidt, T.; Baginsky, S.: Working day and night: Plastid casein kinase 2 catalyses phosphorylation of proteins with diverse functions in light- and dark-adapted plastids. The Plant Journal 104 (2), pp. 546 - 558 (2020)

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161.

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Rosa-Téllez, S.; Anoman, A.D.; Alcántara-Enguídanos, A.; Garza-Aguirre, R.A.; Alseekh, S.; Ros, R.: PGDH family genes differentially affect Arabidopsis tolerance to salt stress. Plant Science 290, 110284 (2020)

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162.

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Sakai, Y.; Koyama-Honda, I.; Tachikawa, M.; Knorr, R. L.; Mizushima, N.: Modeling Membrane Morphological Change during Autophagosome Formation. iScience 23 (9), 10146 (2020)

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163.

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Salem, M. A.; Radwan, R. A.; Mostafa, E. S.; Alseekh, S.; Fernie, A. R.; Ezzat, S. M.: Using an UPLC/MS-based untargeted metabolomics approach for assessing the antioxidant capacity and anti-aging potential of selected herbs. RSC Advances 10, pp. 31511 - 31524 (2020)

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164.

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Salem, M.A.; Yoshida, T.; de Souza, L. P.; Alseekh, S.; Bajdzienko, K.; Fernie, A. R.; Giavalisco, P.: An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress. The Plant Journal 103 (4), pp. 1614 - 1632 (2020)

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165.

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Sánchez-Andrea, I.; Guedes, I.A.; Hornung, B.; Boeren, S.; Lawson, C.E.; Sousa, D.Z.; Bar-Even, A.; Claassens, N. J.; Stams, A.J.M.: The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans. Nature Communications 11 (1), 5090 (2020)

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166.

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Sanchez-Bragado, R.; Vicente, R.; Molero, G.; Serret, M.D.; Maydup, M.L.; Araus, J.L.: New avenues for increasing yield and stability in C3 cereals: exploring ear photosynthesis. Current Opinion in Plant Biology 56, pp. 223 - 234 (2020)

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167.

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Santos Reginaldo, F. P.; Bueno, P.C.P.; de Matos Costa, I. C.; Roque, A. d. A.; Fett-Neto, A. G.; Cavalheiro, A. J.; Giordani, R. B.: Molecular Networking Discloses the Chemical Diversity of Flavonoids and Selaginellins in Selaginella convoluta. Planta Medica (2020)

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168.

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Satanowski, A.; Bar-Even, A.: A one-carbon path for fixing CO2. EMBO reports 21 (4), e50273 (2020)

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169.

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Satanowski, A.; Dronsella, B.; Noor, E.; Vögeli, B.; He, H.; Wichmann, P.; Erb, T.J.; Lindner, S. N.; Bar-Even, A.: Awakening a latent carbon fixation cycle in Escherichia coli. Nature Communications 11 (1), 5812 (2020)

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170.

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Schaarschmidt, S.; Fischer, A.; Lawas, L.M.F.; Alam, R.; Septiningsih, E. M.; Bailey-Serres, J.; Jagadish, S. V. K.; Huettel, B.; Hincha, D. K.; Zuther, E.: Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in Oryza sativa L. International Journal of Molecular Sciences 21 (21), 8148 (2020)

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171.

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Schaarschmidt, S.; Fischer, A.; Zuther, E.; Hincha, D. K.: Evaluation of seven different rna-seq alignment tools based on experimental data from the model plant arabidopsis thaliana. International Journal of Molecular Sciences 21 (5), 1720 (2020)

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172.

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Schaarschmidt, S.; Lawas, L.M.F.; Glaubitz, U.; Li, X.; Erban, A.; Kopka, J.; Krishna Jagadish, S.V.; Hincha, D. K.; Zuther, E.: Season affects yield and metabolic profiles of rice (Oryza sativa) under high night temperature stress in the field. International Journal of Molecular Sciences 21 (9), 3187 (2020)

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173.

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Schuster, M.; Gao, Y.; Schöttler, M. A.; Bock, R.; Zoschke, R.: Limited Responsiveness of Chloroplast Gene Expression during Acclimation to High Light in Tobacco. Plant Physiology 182 (1), pp. 424 - 435 (2020)

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174.

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Scossa, F.; Fernie, A. R.: The evolution of metabolism: How to test evolutionary hypotheses at the genomic level. Computational and Structural Biotechnology Journal 18, pp. 482 - 500 (2020)

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175.

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Seibert, T.; Abel, C.; Wahl, V.: Flowering time and the identification of floral marker genes in Solanum tuberosum ssp. andigena. Journal of Experimental Botany 71 (3), pp. 986 - 996 (2020)

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176.

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Shameer, S.; Vallarino, J. G.; Fernie, A. R.; Ratcliffe, R. G.; Sweetlove, L. J.: Flux balance analysis of metabolism during growth by osmotic cell expansion and its application to tomato fruits. The Plant Journal 103 (1), pp. 68 - 82 (2020)

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177.

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Shapiguzov, A.; Nikkanen, L.; Fitzpatrick, D.; Vainonen, J. P.; Gossens, R.; Alseekh, S.; Aarabi, F.; Tiwari, A.; Blokhina, O.; Panzarová, K. et al.; Benedikty, Z.; Tyystjärvi, E.; Fernie, A. R.; Trtílek, M.; Aro, E.-M.; Rintamäki, E.; Kangasjärvi, J.: Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375 (1801), 20190413 (2020)

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178.

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Shi, T.; Zhu, A.; Jia, J.; Hu, X.; Chen, J.; Liu, W.; Ren, X.; Sun, D.; Fernie, A. R.; Cui, F. et al.; Chen, W.: Metabolomics analysis and metabolite-agronomic trait associations using kernels of wheat (Triticum aestivum) recombinant inbred lines. The Plant Journal 103 (1), pp. 279 - 292 (2020)

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179.

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Silvestri, A.; Pätzold, J.; Fratzl, P.; Scheffel, A.; Faivre, D.: Surface-Enhanced Raman Scattering Microspectroscopy Enables the Direct Characterization of Biomineral-Associated Organic Material on Single Calcareous Microskeletons. The Journal of Physical Chemistry Letters 11 (20), pp. 8623 - 8629 (2020)

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180.

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Skeffington, A. W.; Donath, A.: ProminTools: shedding light on proteins of unknown function in biomineralization with user friendly tools illustrated using mollusc shell matrix protein sequences. PeerJ 8, e9852 (2020)

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181.

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Skeffington, A. W.; Grimm, A.; Schönefeld, S.; Petersen, K.; Scheffel, A.: An efficient method for the plating of haploid and diploid Emiliania huxleyi on solid medium. Journal of Phycology 56 (1), pp. 238 - 242 (2020)

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182.

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Song, S.; Timm, S.; Lindner, S. N.; Reimann, V.; Hess, W. R.; Hagemann, M.; Brouwer, E.-M.: Expression of Formate-Tetrahydrofolate Ligase Did Not Improve Growth but Interferes With Nitrogen and Carbon Metabolism of Synechocystissp. PCC 6803. Frontiers in Microbiology 11, 1650 (2020)

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183.

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Sonnewald, U.; Fernie, A. R.; Gruissem, W.; Schläpfer, P.; Anjanappa, R. B.; Chang, S.-H.; Ludewig, F.; Rascher, U.; Muller, O.; van Doorn, A. M. et al.; Rabbi, I. Y.; Zierer, W.: The Cassava Source-Sink project: Opportunities and challenges for crop improvement by metabolic engineering. The Plant Journal 103 (5), pp. 1655 - 1665 (2020)

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184.

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Sujeeth, N.; Mehterov, N.; Gupta, S.; Qureshi, M. K.; Fischer, A.; Proost, S.; Omidbakhshfard, M. A.; Obata, T.; Benina, M.; Staykov, N. et al.; Balazadeh, S.; Walther, D.; Fernie, A. R.; Mueller-Roeber, B.; Hille, J.; Gechev, T. S.: A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 77, pp. 705 - 718 (2020)

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185.

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Suzuki, M.; Wu, S.; Mimura, M.; Alseekh, S.; Fernie, A. R.; Hanson, A. D.; McCarty, D. R.: Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize. The Plant Journal 101 (2), pp. 442 - 454 (2020)

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186.

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Tan, J.; Zhang, F.; Karcher, D.; Bock, R.: Expanding the genome-targeting scope and the site selectivity of high-precision base editors. Nature Communications 11 (1), 629 (2020)

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187.

Journal Article

Tedesco, S.; Pina, A.; Fevereiro, P.; Kragler, F.: A Phenotypic Search on Graft Compatibility in Grapevine. Agronomy 10 (5), 706 (2020)

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188.

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Thirumalaikumar, V. P.; Gorka, M.; Schulz, K.; Masclaux-Daubresse, C.; Sampathkumar, A.; Skirycz, A.; Vierstra, R. D.; Balazadeh, S.: Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90 and ROF1. Autophagy 19 (9), pp. 2184 - 2199 (2020)

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189.

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Thole, V.; Vain, P.; Yang, R.-Y.; Almeida Barros da Silva, J.; Enfissi, E.M.A.; Nogueira, M.; Price, E.J.; Alseekh, S.; Fernie, A. R.; Fraser, P.D. et al.; Hanson, P.; Martin, C.: Analysis of Tomato Post-Harvest Properties: Fruit Color, Shelf Life, and Fungal Susceptibility. Current protocols in plant biology 5 (2), e20108 (2020)

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190.

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Tohge, T.; Scossa, F.; Wendenburg, R.; Frasse, P.; Balbo, I.; Watanabe, M.; Alseekh, S.; Jadha, S. S.; Delfin, J. C.; Lohse, M. et al.; Giavalisco, P.; Usadel, B.; Zhang, Y.; Luo, J.; Bouzayen, M.; Fernie, A. R.: Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13 (7), pp. 1027 - 1046 (2020)

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191.

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Tong, H.; Küken, A.; Nikoloski, Z.: Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth. Nature Communications 11 (1), 2410 (2020)

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192.

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Trejo-Arellano, M. S.; Mehdi, S.; de Jonge, J.; Tomastikova, E. D.; Köhler, C.; Hennig, L.: Dark-Induced Senescence Causes Localized Changes in DNA Methylation. Plant Physiology 182 (2), pp. 949 - 961 (2020)

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Treves, H.; Siemiatkowska, B.; Luzarowska, U.; Murik, O.; Fernandez-Pozo, N.; Moraes, T. A.; Erban, A.; Armbruster, U.; Brotman, Y.; Kopka, J. et al.; Rensing, S. A.; Szymanski, J.; Stitt, M.: Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. Nature Plants 6, pp. 1031 - 1043 (2020)

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Upadhyaya, S.; Agrawal, S.; Gorakshakar, A.; Rao, B.J.: TOR kinase activity in Chlamydomonas reinhardtii is modulated by cellular metabolic states. FEBS Letters 594 (19), pp. 3122 - 3141 (2020)

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Urrea Castellanos, R.; Friedrich, T.; Petrovic, N.; Altmann, S.; Brzezinka, K.; Gorka, M.; Graf, A.; Bäurle, I.: FORGETTER2 protein phosphatase and phospholipase D modulate heat stress memory in Arabidopsis. The Plant Journal 104 (1), pp. 7 - 17 (2020)

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196.

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Vaid, N.; Ishihara, H.; Plötner, B.; Sageman-Furnas, K.; Wiszniewski, A.A.G.; Laitinen, R.: Leaf chlorosis in Arabidopsis thaliana hybrids is associated with transgenerational decline and imbalanced ribosome number. New Phytologist 228 (3), pp. 989 - 1000 (2020)

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Vallarino, J. G.; Kubiszewski-Jakubiak, S.; Ruf, S.; Rößner, M.; Timm, S.; Bauwe, H.; Carrari, F.; Rentsch, D.; Bock, R.; Sweetlove, L.J. et al.; Fernie, A. R.: Multi-gene metabolic engineering of tomato plants results in increased fruit yield up to 23. Scientific Reports 10 (1), 17219 (2020)

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Vallarino, J.G.; Merchante, C.; Sánchez-Sevilla, J.F.; de Luis Balaguer, M.A.; Pott, D.M.; Ariza, M.T.; Casañal, A.; Posé, D.; Vioque, A.; Amaya, I. et al.; Willmitzer, L.; Solano, R.; Sozzani, R.; Fernie, A. R.; Botella, M.A.; Giovannoni, J.J.; Valpuesta, V.; Osorio, S.: Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development. Plant Biotechnology Journal 18 (4), pp. 929 - 943 (2020)

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van Eerde, A.; Várnai, A.; Jameson, J.K.; Paruch, L.; Moen, A.; Anonsen, J.H.; Chylenski, P.; Steen, H.S.; Heldal, I.; Bock, R. et al.; Eijsink, V.G.H.; Liu-Clarke, J.: In-depth characterization of Trichoderma reesei cellobiohydrolase TrCel7A produced in Nicotiana benthamiana reveals limitations of cellulase production in plants by host-specific post-translational modifications. Plant Biotechnology Journal 18 (3), pp. 631 - 643 (2020)

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Vergara-Diaz, O.; Vatter, T.; Kefauver, S. C.; Obata, T.; Fernie, A. R.; Araus, J. L.: Assessing durum wheat ear and leaf metabolomes in the field through hyperspectral data. The Plant Journal 102 (3), pp. 615 - 630 (2020)

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