Publications of the Group

Journal Article (23)

1.

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Greiner, S.; Lehwark, P.; Bock, R.: OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Research 47 (W1), pp. W59 - W64 (2019)
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Bdolach, E.; Prusty, M. R.; Faigenboim-Doron, A.; Filichkin, T.; Helgerson, L.; Schmid, K. J.; Greiner, S.; Fridman, E.: Thermal plasticity of the circadian clock is under nuclear and cytoplasmic control in wild barley. Plant, Cell and Environment 42 (11), pp. 3105 - 3120 (2019)
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Greiner, S.; Golczyk, H.; Malinova, I.; Pellizzer, T.; Bock, R.; Börner, T.; Herrmann, R. G.: Chloroplast nucleoids are highly dynamic in ploidy, number, and structure during angiosperm leaf development. The Plant Journal (accepted)
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Hollister, J. D.; Greiner, S.; Johnson, M. T. J.; Wright, S. I.: Hybridization and a loss of sex shape genome-wide diversity and the origin of species in the evening primroses (Oenothera, Onagraceae). New Phytologist 224 (3), pp. 1372 - 1380 (2019)
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Leebens-Mack, J. H.; Barker, M. S.; Carpenter, E. J.; Deyholos, M. K.; Gitzendanner, M. A.; Graham, S. W.; Grosse, I.; Li, Z.; Melkonian, M.; Mirarab, S. et al.; Porsch, M.; Quint, M.; Rensing, S. A.; Soltis, D. E.; Soltis, P. S.; Stevenson, D. W.; Ullrich, K. K.; Wickett, N. J.; DeGironimo, L.; Edger, P. P.; Jordon-Thaden, I. E.; Joya, S.; Liu, T.; Melkonian, B.; Miles, N. W.; Pokorny, L.; Quigley, C.; Thomas, P.; Villarreal, J. C.; Augustin, M. M.; Barrett, M. D.; Baucom, R. S.; Beerling, D. J.; Benstein, R. M.; Biffin, E.; Brockington, S. F.; Burge, D. O.; Burris, J. N.; Burris, K. P.; Burtet-Sarramegna, V.; Caicedo, A. L.; Cannon, S. B.; Çebi, Z.; Chang, Y.; Chater, C.; Cheeseman, J. M.; Chen, T.; Clarke, N. D.; Clayton, H.; Covshoff, S.; Crandall-Stotler, B. J.; Cross, H.; dePamphilis, C. W.; Der, J. P.; Determann, R.; Dickson, R. C.; Stilio, D.; S., V.; Ellis, S.; Fast, E.; Feja, N.; Field, K. J.; Filatov, D. A.; Finnegan, P. M.; Floyd, S. K.; Fogliani, B.; García, N.; Gâteblé, G.; Godden, G. T.; Goh, F. (. Y.; Greiner, S.; Harkess, A.; Heaney, J. M.; Helliwell, K. E.; Heyduk, K.; Hibberd, J. M.; Hodel, R. G. J.; Hollingsworth, P. M.; Johnson, M. T. J.; Jost, R.; Joyce, B.; Kapralov, M. V.; Kazamia, E.; Kellogg, E. A.; Koch, M. A.; Von Konrat, M.; Könyves, K.; Kutchan, T. M.; Lam, V.; Larsson, A.; Leitch, A. R.; Lentz, R.; Li, F.-W.; Lowe, A. J.; Ludwig, M.; Manos, P. S.; Mavrodiev, E.; McCormick, M. K.; McKain, M.; McLellan, T.; McNeal, J. R.; Miller, R. E.; Nelson, M. N.; Peng, Y.; Ralph, P.; Real, D.; Riggins, C. W.; Ruhsam, M.; Sage, R. F.; Sakai, A. K.; Scascitella, M.; Schilling, E. E.; Schlösser, E.-M.; Sederoff, H.; Servick, S.; Sessa, E. B.; Shaw, A. J.; Shaw, S. W.; Sigel, E. M.; Skema, C.; Smith, A. G.; Smithson, A.; Stewart, C. N.; Stinchcombe, J. R.; Szövényi, P.; Tate, J. A.; Tiebel, H.; Trapnell, D.; Villegente, M.; Wang, C.-N.; Weller, S. G.; Wenzel, M.; Weststrand, S.; Westwood, J. H.; Whigham, D. F.; Wu, S.; Wulff, A. S.; Yang, Y.; Zhu, D.; Zhuang, C.; Zuidof, J.; Chase, M. W.; Pires, J. C.; Rothfels, C. J.; Yu, J.; Chen, C.; Chen, L.; Cheng, S.; Li, J.; Li, R.; Li, X.; Lu, H.; Ou, Y.; Sun, X.; Tan, X.; Tang, J.; Tian, Z.; Wang, F.; Wang, J.; Wei, X.; Xu, X.; Yan, Z.; Yang, F.; Zhong, X.; Zhou, F.; Zhu, Y.; Zhang, Y.; Ayyampalayam, S.; Barkman, T. J.; Nguyen, N.-p.; Matasci, N.; Nelson, D. R.; Sayyari, E.; Wafula, E. K.; Walls, R. L.; Warnow, T.; An, H.; Arrigo, N.; Baniaga, A. E.; Galuska, S.; Jorgensen, S. A.; Kidder, T. I.; Kong, H.; Lu-Irving, P.; Marx, H. E.; Qi, X.; Reardon, C. R.; Sutherland, B. L.; Tiley, G. P.; Welles, S. R.; Yu, R.; Zhan, S.; Gramzow, L.; Theißen, G.; Wong, G. K.-S.; Initiative, O. T. P. T.: One thousand plant transcriptomes and the phylogenomics of green plants. Nature 574 (7780), pp. 679 - 685 (2019)
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Lehwark, P.; Greiner, S.: GB2sequin-A file converter preparing custom GenBank files for database submission. Genomics 111 (4), pp. 759 - 761 (2019)
7.

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Sobanski, J.; Giavalisco, P.; Fischer, A.; Kreiner, J.M.; Walther, D.; Schöttler, M. A.; Pellizzer, T.; Golczyk, H.; Obata, T.; Bock, R. et al.; Sears, B.B.; Greiner, S.: Chloroplast competition is controlled by lipid biosynthesis in evening primroses. Proceedings of the National Academy of Sciences of the United States of America 116 (12), pp. 5665 - 5674 (2019)
8.

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Küken, A.; Sommer, F.; Yaneva-Roder, L.; Mackinder, L. C. M.; Höhne, M.; Geimer, S.; Jonikas, M. C.; Schroda, M.; Stitt, M.; Nikoloski, Z. et al.; Mettler, T.: Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts. eLife 7 (2018)
9.

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Thormählen, I.; Zupok, A.; Rescher, J.; Leger, J.; Weissenberger, S.; Groysman, J.; Orwat, A.; Chatel-Innocenti, G.; Issakidis-Bourguet, E.; Armbruster, U. et al.; Geigenberger, P.: Thioredoxins Play a Crucial Role in Dynamic Acclimation of Photosynthesis in Fluctuating Light. Molecular Plant 10 (1), pp. 168 - 182 (2017)
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Tillich, M.; Lehwark, P.; Pellizzer, T.; Ulbricht-Jones, E. S.; Fischer, A.; Bock, R.; Greiner, S.: GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Research 45 (W1), pp. W6 - W11 (2017)
11.

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Massouh, A.; Schubert, J.; Yaneva-Roder, L.; Ulbricht-Jones, E. S.; Zupok, A.; Johnson, M. T. J.; Wright, S. I.; Pellizer, T.; Sobanski, J.; Bock, R. et al.; Greiner, S.: Spontaneous Chloroplast Mutants Mostly Occur by Replication Slippage and Show a Biased Pattern in the Plastome of Oenothera. The Plant Cell 28 (4), pp. 911 - 929 (2016)
12.

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Agren, J. A.; Greiner, S.; Johnson, M. T. J.; Wright, S. I.: No evidence that sex and transposable elements drive genome size variation in evening primroses. Evolution 69 (4), pp. 1053 - 1062 (2015)
13.

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Hollister, J. D.; Greiner, S.; Wang, W.; Wang, J.; Zhang, Y.; Wong, G. K.-S.; Wright, S. I.; Johnson, M. T. J.: Recurrent Loss of Sex Is Associated with Accumulation of Deleterious Mutations in Oenothera. Molecular Biology and Evolution 32 (4), pp. 896 - 905 (2015)
14.

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Greiner, S.; Sobanski, J.; Bock, R.: Why are most organelle genomes transmitted maternally? Bioessays 37 (1), pp. 80 - 94 (2015)
15.

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Greiner, S.; Koehl, K. I.: Growing evening primroses (Oenothera). Frontiers in Plant Science 5 (2014)
16.

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Golczyk, H.; Greiner, S.; Wanner, G.; Weihe, A.; Bock, R.; Börner, T.; Herrmann, R. G.: Chloroplast DNA in mature and senescing leaves - a reappraisal. The Plant Cell 26 (3), pp. 847 - 854 (2014)
17.

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Golczyk, H.; Massouh, A.; Greiner, S.: Translocations of Chromosome End-Segments and Facultative Heterochromatin Promote Meiotic Ring Formation in Evening Primroses. The Plant Cell 26 (3), pp. 1280 - 1293 (2014)
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Mettler, T.; Mühlhaus, T.; Hemme, D.; Schöttler, M. A.; Rupprecht, J.; Idoine, A.; Veyel, D.; Pal, S. K.; Yaneva-Roder, L.; Winck, F. V. et al.; Sommer, F.; Vosloh, D.; Seiwert, B.; Erban, A.; Burgos, A.; Arvidsson, S.; Schönfelder, S.; Arnold, A.; Günther, M.; Krause, U.; Lohse, M.; Kopka, J.; Nikoloski, Z.; Mueller-Roeber, B.; Willmitzer, L.; Bock, R.; Schroda, M.; Stitt, M.: Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26 (6), pp. 2310 - 2350 (2014)
19.

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Greiner, S.; Bock, R.: Tuning a ménage à trois: co-evolution and co-adaptation of nuclear and organellar genomes in plants. Bioessays 35 (4), pp. 354 - 365 (2013)
20.

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Johnson, M. T.; Carpenter, E. J.; Tian, Z.; Bruskiewich, R.; Burris, J. N.; Carrigan, C. T.; Chase, M. W.; Clarke, N. D.; Covshoff, S.; Depamphilis, C. W. et al.; Edger, P. P.; Goh, F.; Graham, S.; Greiner, S.; Hibberd, J. M.; Jordon-Thaden, I.; Kutchan, T. M.; Leebens-Mack, J.; Melkonian, M.; Miles, N.; Myburg, H.; Patterson, J.; Pires, J. C.; Ralph, P.; Rolf, M.; Sage, R. F.; Soltis, D.; Soltis, P.; Stevenson, D.; Stewart, C. N.,. J.; Surek, B.; Thomsen, C. J.; Villarreal, J. C.; Wu, X.; Zhang, Y.; Deyholos, M. K.; Wong, G. K.: Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One 7 (11), p. e50226 (2012)

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