Zeitschriftenartikel (55)

  1. 1.
    Hoehenwarter, W.; Larhlimi, A.; Hummel, J.; Egelhofer, V.; Selbig, J.; van Dongen, J. T.; Wienkoop, S.; Weckwerth, W.: MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. Journal of Proteome Research 10 (7), S. 2979 - 2991 (2011)
  2. 2.
    Joshi, H. J.; Hirsch-Hoffmann, M.; Baerenfaller, K.; Gruissem, W.; Baginsky, S.; Schmidt, R.; Schulze, W. X.; Sun, Q.; van Wijk, K. J.; Egelhofer, V. et al.; Wienkoop, S.; Weckwerth, W.; Bruley, C.; Rolland, N.; Toyoda, T.; Nakagami, H.; Jones, A. M.; Briggs, S. P.; Castleden, I.; Tanz, S. K.; Millar, A. H.; Heazlewood, J. L.: MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data. Plant Physiology 155 (1), S. 259 - 270 (2011)
  3. 3.
    Chen, Y.; Hoehenwarter, W.; Weckwerth, W.: Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. Plant Journal 63 (1), S. 1 - 17 (2010)
  4. 4.
    Scherling, C.; Roscher, C.; Giavalisco, P.; Schulze, E.-D.; Weckwerth, W.: Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species. PLoS One 5 (9), S. e12569 (2010)
  5. 5.
    Wienkoop, S.; Weiss, J.; May, P.; Kempa, S.; Irgang, S.; Recuenco-Munoz, L.; Pietzke, M.; Schwemmer, T.; Rupprecht, J.; Egelhofer, V. et al.; Weckwerth, W.: Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. Molecular Biosystems 6 (6), S. 1018 - 1031 (2010)
  6. 6.
    Baessler, O. Y.; Weiss, J.; Wienkoop, S.; Lehmann, K.; Scheler, C.; Dolle, S.; Schwarz, D.; Franken, P.; George, E.; Worm, M. et al.; Weckwerth, W.: Evidence for Novel Tomato Seed Allergens: IgE-Reactive Legumin and Vicilin Proteins Identified by Multidimensional Protein Fractionation-Mass Spectrometry and in Silico Epitope Modeling. Journal of Proteome Research 8 (3), S. 1111 - 1122 (2009)
  7. 7.
    Durek, P.; Schudoma, C.; Weckwerth, W.; Selbig, J.; Walther, D.: Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 10, S. 117 (2009)
  8. 8.
    Ito, J.; Taylor, N. L.; Castleden, I.; Weckwerth, W.; Millar, A. H.; Heazlewood, J. L.: A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. Proteomics 9 (17), S. 4229 - 4240 (2009)
  9. 9.
    Kempa, S.; Hummel, J.; Schwemmer, T.; Pietzke, M.; Strehmel, N.; Wienkoop, S.; Kopka, J.; Weckwerth, W.: An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49 (1), S. 82 - 91 (2009)
  10. 10.
    Larrainzar, E.; Wienkoop, S.; Scherling, C.; Kempa, S.; Ladrera, R.; Arrese-Igor, C.; Weckwerth, W.; Gonzalez, E. M.: Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. Molecular Plant-Microbe Interactions 22 (12), S. 1565 - 1576 (2009)
  11. 11.
    Scherling, C.; Ulrich, K.; Ewald, D.; Weckwerth, W.: A Metabolic Signature of the Beneficial Interaction of the Endophyte Paenibacillus sp Isolate and In Vitro-Grown Poplar Plants Revealed by Metabolomics. Molecular Plant-Microbe Interactions 22 (8), S. 1032 - 1037 (2009)
  12. 12.
    Heazlewood, J. L.; Durek, P.; Hummel, J.; Selbig, J.; Weckwerth, W.; Walther, D.; Schulze, W. X.: PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36 (Database issue), S. D1015 - D1021 (2008)
  13. 13.
    Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), S. 4214 - 4225 (2008)
  14. 14.
    Lehmann, U.; Wienkoop, S.; Tschoep, H.; Weckwerth, W.: If the antibody fails - a mass Western approach. The Plant Journal 55 (6), S. 1039 - 1046 (2008)
  15. 15.
    May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), S. 157 - 166 (2008)
  16. 16.
    Timm, S.; Nunes-Nesi, A.; Pamik, T.; Morgenthal, K.; Wienkoop, S.; Keerberg, O.; Weckwerth, W.; Kleczkowski, L. A.; Fernie, A. R.; Bauwe, H.: A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis. The Plant Cell 20 (10), S. 2848 - 2859 (2008)
  17. 17.
    Weckwerth, W.: Integration of metabolomics and proteomics in molecular plant physiology - coping with the complexity by data-dimensionality reduction. Physiologia Plantarum 132 (2), S. 176 - 189 (2008)
  18. 18.
    Wienkoop, S.; Morgenthal, K.; Wolschin, F.; Scholz, M.; Selbig, J.; Weckwerth, W.: Integration of metabolomic and proteomic phenotypes. Molecular & Cellular Proteomics 7 (9), S. 1725 - 1736 (2008)
  19. 19.
    Engel, N.; van den Daele, K.; Kolukisaoglu, U.; Morgenthal, K.; Weckwerth, W.; Parnik, T.; Keerberg, O.; Bauwe, H.: Deletion of glycine decarboxylase in arabidopsis is lethal under nonphotorespiratory conditions. Plant Physiology 144 (3), S. 1328 - 1335 (2007)
  20. 20.
    Hummel, J.; Niemann, M.; Wienkoop, S.; Schulze, W.; Steinhauser, D.; Selbig, J.; Walther, D.; Weckwerth, W.: ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, S. 216 (2007)
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