Publications of Takayuki Tohge

Bolger, A. M.; Scossa, F.; Bolger, A. M.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46 (9), pp. 1034 - 1038 (2014)

Schwahn, K.; de Souza, L. P.; Fernie, A. R.; Tohge, T.: Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade. Journal of Integrative Plant Biology 56 (9), pp. 864 - 875 (2014)

Fukushima, A.; Kusano, M.; Mejia, R. F.; Iwasa, M.; Kobayashi, M.; Hayashi, N.; Watanabe-Takahashi, A.; Narisawa, T.; Tohge, T.; Hur, M. et al.; Wurtele, E. S.; Nikolau, B. J.; Saito, K.: Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis. Plant Physiology 165 (3), pp. 948 - 961 (2014)

Martins, S. C. V.; Araújo, W. L.; Tohge, T.; Fernie, A. R.; DaMatta, F. M.: In High-Light-Acclimated Coffee Plants the Metabolic Machinery Is Adjusted to Avoid Oxidative Stress Rather than to Benefit from Extra Light Enhancement in Photosynthetic Yield. PLoS One 9 (4), e94862 (2014)

Araujo, W. L.; Tohge, T.; Nunes-Nesi, A.; Obata, T.; Fernie, A. R.: Analysis of Kinetic Labeling of Amino Acids and Organic Acids by GC-MS. Methods in molecular biology 1090, pp. 107 - 119 (2014)

Florian, A.; Nikoloski, Z.; Sulpice, R.; Timm, S.; Araujo, W. L.; Tohge, T.; Bauwe, H.; Fernie, A. R.: Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7 (5 - SI), pp. 893 - 911 (2014)

Florian, A.; Timm, S.; Nikoloski, Z.; Tohge, T.; Bauwe, H.; Araujo, W. L.; Fernie, A. R.: Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56 (9 - SI), pp. 941 - 959 (2014)

Heise, R.; Arrivault, S.; Szecowka, M.; Tohge, T.; Nunes-Nesi, A.; Stitt, M.; Nikoloski, Z.; Fernie, A. R.: Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9 (8), pp. 1803 - 1824 (2014)

Hu, C.; Shi, J.; Quan, S.; Cui, B.; Kleessen, S.; Nikoloski, Z.; Tohge, T.; Alexander, D.; Guo, L.; Lin, H. et al.; Wang, J.; Cui, X.; Rao, J.; Luo, Q.; Zhao, X.; Fernie, A. R.; Zhang, D.: Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics. Scientific Reports 4, 5067 (2014)

Klie, S.; Osorio, S.; Tohge, T.; Drincovich, M. F.; Fait, A.; Giovannoni, J. J.; Fernie, A. R.; Nikoloski, Z.: Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164 (1), pp. 55 - 68 (2014)

Lohse, M.; Nagel, A.; Herter, T.; May, P.; Schroda, M.; Zrenner, R.; Tohge, T.; Fernie, A. R.; Stitt, M.; Usadel, B.: Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environment 37 (5), pp. 1250 - 1258 (2014)

Ruprecht, C.; Tohge, T.; Fernie, A. R.; Mortimer, C. L.; Kozlo, A.; Fraser, P. D.; Funke, N.; Cesarino, I.; Vanholme, R.; Boerjan, W. et al.; Morreel, K.; Burgert, I.; Gierlinger, N.; Bulone, V.; Schneider, V.; Stockero, A.; Navarro, J. P.; Pudel, F.; Tambuyser, B.; Hygate, J.; Bumstead, J.; Notley, L.; Persson, S.: Transcript and Metabolite Profiling for the Evaluation of Tobacco Tree and Poplar as Feedstock for the Bio-based Industry. Journal of visualized experiments: JoVE (87), e51393 (2014)

Tohge, T.; de Souza, L. P.; Fernie, A. R.: Genome‐enabled plant metabolomics. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences 966, pp. 7 - 20 (2014)

Tohge, T.; Obata, T.; Fernie, A. R.: Biosynthesis of the Essential Respiratory Cofactor Ubiquinone from Phenylalanine in Plants. Molecular Plant 7 (9), pp. 1403 - 1405 (2014)

Wang, L.; Czedik-Eysenberg, A.; Mertz, R. A.; Si, Y.; Tohge, T.; Nunes-Nesi, A.; Arrivault, S.; Dedow, L. K.; Bryant, D. W.; Zhou, W. et al.; Xu, J.; Weissmann, S.; Studer, A.; Li, P.; Zhang, C.; LaRue, T.; Shao, Y.; Ding, Z.; Sun, Q.; Patel, R. V.; Turgeon, R.; Zhu, X.; Provart, N. J.; Mockler, T. C.; Fernie, A. R.; Stitt, M.; Liu, P.; Brutnell, T. P.: Comparative analyses of C-4 and C-3 photosynthesis in developing leaves of maize and rice. Nature biotechnology 32 (11), pp. 1158 - 1165 (2014)

Hincha, D. K.; Schulz, E.; Thalhammer, A.; Tohge, T.; Sulpice, R.; Fernie, A. R.; Zuther, E.: The Role of Secondary Metabolites and COR Proteins in Plant Freezing Tolerance. In In Vitro Cellular & Developmental Biology-Animal, 50, p. S13 - S13. Tissue Culture Association, Columbia, MD (2014)

Tohge, T.; Alseekh, S.; Fernie, A. R.: On the regulation and function of secondary metabolism during fruit development and ripening. (2014)

Araujo, W. L.; Martins, A. O.; Fernie, A. R.; Tohge, T.: 2-Oxoglutarate: linking TCA cycle function with amino acid, glucosinolate, flavonoid, alkaloid, and gibberellin biosynthesis. (2014)

Tohge, T.; Fernie, A. R.: Lignin, mitochondrial family, and photorespiratory transporter classification as case studies in using co-expression, co-response, and protein locations to aid in identifying transport functions. (2014)