Vollständige Publikationsliste

Publikationen von Marek Mutwil

Zeitschriftenartikel (25)

  1. 1.
    Hansen, B. O.; Meyer, E. H.; Ferrari, C.; Vaid, N.; Movahedi, S.; Vandepoele, K.; Nikoloski, Z.; Mutwil, M.: Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana. New Phytologist 217 (4), S. 1521 - 1534 (2018)
  2. 2.
    Proost, S.; Krawczyk, A.; Mutwil, M.: LSTrAP: efficiently combining RNA sequencing data into co-expression networks. BMC Bioinformatics 18 (1), 444 (2017)
  3. 3.
    Ruprecht, C.; Proost, S.; Hernandez-Coronado, M.; Ortiz-Ramirez, C.; Lang, D.; Rensing, S. A.; Becker, J. D.; Vandepoele, K.; Mutwil, M.: Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. The Plant Journal 90 (3), S. 447 - 465 (2017)
  4. 4.
    Ruprecht, C.; Vaid, N.; Proost, S.; Persson, S.; Mutwil, M.: Beyond Genomics: Studying Evolution with Gene Coexpression Networks. Trends in Plant Science 22 (4), S. 298 - 307 (2017)
  5. 5.
    Ruprecht, C.; Lohaus, R.; Vanneste, K.; Mutwil, M.; Nikoloski, Z.; Van de Peer, Y.; Persson, S.: Revisiting ancestral polyploidy in plants. Science Advances 3 (7), e1603195 (2017)
  6. 6.
    Sibout, R.; Proost, S.; Hansen, B. O.; Vaid, N.; Giorgi, F. M.; Ho-Yue-Kuang, S.; Legee, F.; Cezart, L.; Bouchabke-Coussa, O.; Soulhat, C. et al.; Provart, N.; Pasha, A.; Le Bris, P.; Roujol, D.; Hofte, H.; Jamet, E.; Lapierre, C.; Persson, S.; Mutwil, M.: Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon. New Phytologist 215 (3), S. 1009 - 1025 (2017)
  7. 7.
    Proost, S.; Mutwil, M.: Tools of the trade: studying molecular networks in plants. Current Opinion in Plant Biology 30, S. 143 - 150 (2016)
  8. 8.
    Ruprecht, C.; Mendrinna, A.; Tohge, T.; Sampathkumar, A.; Klie, S.; Fernie, A. R.; Nikoloski, Z.; Persson, S.; Mutwil, M.: FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants. Plant Physiology 170 (3), S. 1878 - 1894 (2016)
  9. 9.
    Wu, S.; Alseekh, S.; Cuadros-Inostroza, A. C.; Fusari, C. M.; Mutwil, M.; Kooke, R.; Keurentjes, J. B.; Fernie, A. R.; Willmitzer, L.; Brotman, Y.: Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana. PLoS Genetics 12 (10), e1006363 (2016)
  10. 10.
    Wang, T.; Tohge, T.; Ivakov, A.; Mueller-Roeber, B.; Fernie, A. R.; Mutwil, M.; Schippers, J. H. M.; Persson, S.: Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiology 169 (2), S. 1027 - 1041 (2015)
  11. 11.
    Hansen, B. O.; Vaid, N.; Musialak-Lange, M.; Janowski, M.; Mutwil, M.: Elucidating gene function and function evolution through comparison of co-expression networks of plants. Frontiers in Plant Science 5, S. 394 - 394 (2014)
  12. 12.
    Rhee, S. Y.; Mutwil, M.: Towards revealing the functions of all genes in plants. Trends in Plant Science (2013)
  13. 13.
    Klie, S.; Mutwil, M.; Persson, S.; Nikoloski, Z.: Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species views. Molecular BioSystems 8 (9), S. 2233 - 2241 (2012)
  14. 14.
    Thelin, L.; Mutwil, M.; Sommarin, M.; Persson, S.: Diverging functions among calreticulin isoforms in higher plants. Plant Signaling & Behavior 6 (6), S. 905 - 910 (2011)
  15. 15.
    Tohge, T.; Ramos, M. S.; Nunes-Nesi, A.; Mutwil, M.; Giavalisco, P.; Steinhauser, D.; Schellenberg, M.; Willmitzer, L.; Persson, S.; Martinoia, E. et al.; Fernie, A. R.: Toward the storage metabolome: profiling the barley vacuole. Plant Physiology 157 (3), S. 1469 - 1482 (2011)
  16. 16.
    Mutwil, M.; Klie, S.; Tohge, T.; Giorgi, F. M.; Wilkins, O.; Campbell, M. M.; Fernie, A. R.; Usadel, B.; Nikoloski, Z.; Persson, S.: PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23 (3), S. 895 - 910 (2011)
  17. 17.
    Ruprecht, C.; Mutwil, M.; Saxe, F.; Eder, M.; Nikoloski, Z.; Persson, S.: Large-scale co-expression approach to dissect secondary cell wall formation across plant species. Frontiers in Plant Science 2, S. 23 (2011)
  18. 18.
    Mutwil, M.; Usadel, B.; Schuette, M.; Loraine, A.; Ebenhoeh, O.; Persson, S.: Assembly of an Interactive Correlation Network for the Arabidopsis Genome Using a Novel Heuristic Clustering Algorithm. Plant Physiology 152 (1), S. 29 - 43 (2010)
  19. 19.
    Schütte, M.; Mutwil, M.; Persson, S.; Ebenhöh, O.: Analyzing gene coexpression data by an evolutionary model. Genome Informatics 24, S. 154 - 163 (2010)
  20. 20.
    Mutwil, M.; Ruprecht, C.; Giorgi, F. M.; Bringmann, M.; Usadel, B.; Persson, S.: Transcriptional Wiring of Cell Wall-Related Genes in Arabidopsis. Molecular Plant 2 (5), S. 1015 - 1024 (2009)
  21. 21.
    Usadel, B.; Obayashi, T.; Mutwil, M.; Giorgi, F. M.; Bassel, G. W.; Tanimoto, M.; Chow, A.; Steinhauser, D.; Persson, S.; Provart, N. J.: Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell and Environment 32 (12), S. 1633 - 1651 (2009)
  22. 22.
    Bernal, A. J.; Yoo, C.-M.; Mutwil, M.; Jensen, J. K.; Hou, G.; Blaukopf, C.; Sorensen, I.; Blancaflor, E. B.; Scheller, H. V.; Willats, W. G. T.: Functional Analysis of the Cellulose Synthase-Like Genes CSLD1, CSLD2, and CSLD4 in Tip-Growing Arabidopsis Cells. Plant Physiology 148 (3), S. 1238 - 1253 (2008)
  23. 23.
    Geisler, D. A.; Sampathkumar, A.; Mutwil, M.; Persson, S.: Laying down the bricks: logistic aspects of cell wall biosynthesis. Current Opinion in Plant Biology 11 (6), S. 647 - 652 (2008)
  24. 24.
    Mutwil, M.; Obro, J.; Willats, W. G. T.; Persson, S.: GeneCAT - novel webtools that combine BLAST and co-expression analyses. Nucleic Acids Research 36 (Web Server issue), S. W320 - W326 (2008)
  25. 25.
    Mutwil, M.; Debolt, S.; Persson, S.: Cellulose synthesis: a complex complex. Current Opinion in Plant Biology 11 (3), S. 252 - 257 (2008)
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