Vollständige Publikationsliste

Publikationen von Patrick Giavalisco

Zeitschriftenartikel (72)

  1. 1.
    Barbash, S.; Garfinkel, B. P.; Maoz, R.; Simchovitz, A.; Nadorp, B.; Guffanti, A.; Bennett, E. R.; Nadeau, C.; Türk, A.; Paul, L. et al.; Reda, T.; Li, Y.; Buchman, A. S.; Greenberg, D. S.; Seitz, A.; Bennett, D. A.; Giavalisco, P.; Soreq, H.: Alzheimer's brains show inter-related changes in \RNA\ and lipid metabolism. Neurobiology of Disease 106, S. 1 - 13 (2017)
  2. 2.
    Bozek, K.; Khrameeva, E. E.; Reznick, J.; Omerbašić, D.; Bennett, N. C.; Lewin, G. R.; Azpurua, J.; Gorbunova, V.; Seluanov, A.; Regnard, P. et al.; Wanert, F.; Marchal, J.; Pifferi, F.; Aujard, F.; Liu, Z.; Shi, P.; Pääbo, S.; Schröder, F.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Lipidome determinants of maximal lifespan in mammals. Scientific Reports (2017)
  3. 3.
    Hanhart, P.; Thiess, M.; Amari, K.; Bajdzienko, K.; Giavalisco, P.; Heinlein, M.; Kehr, J.: Bioinformatic and expression analysis of the Brassica napus L. cyclophilins. Scientific Reports 7, 1514 (2017)
  4. 4.
    Li, Q.; Bozek, K.; Xu, C.; Guo, Y.; Sun, J.; Pääbo, S.; Sherwood, C. C.; Hof, P. R.; Ely, J. J.; Li, Y. et al.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Changes in lipidome composition during brain development in humans, chimpanzees, and macaque monkeys. Molecular Biology and Evolution 34 (5), S. 1155 - 1166 (2017)
  5. 5.
    Salem, M.A.; Bernach, M.; Bajdzienko, K.; Giavalisco, P.: A simple fractionated extraction method for the comprehensive analysis of metabolites, lipids, and proteins from a single sample. Journal of Visualized Experiments 217 (124), e55802 (2017)
  6. 6.
    Swiadek, M.; Proost, S.; Sieh, D.; Yu, J.; Todesco, M.; Jorzig, C.; Cubillos, A.; Plötner, B.; Nikoloski, Z.; Chae, E. et al.; Giavalisco, P.; Fischer, A.; Schröder, F.; Kim, S.-T.; Weigel, D.; Laitinen, R.: Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213 (2), S. 900 - 915 (2017)
  7. 7.
    Liu, Z.; Omranian, N.; Neumetzler, L.; Wang, T.; Herter, T.; Usadel, B.; Demura, T.; Giavalisco, P.; Nikoloski, Z.; Persson, S.: A transcriptional and metabolic framework for secondary wall formation in arabidopsis. Plant Physiology 172 (2), S. 1334 - 1351 (2016)
  8. 8.
    Ostendorp, A.; Pahlow, S.; Krüßel, L.; Hanhart, P.; Garbe, M. Y.; Deke, J.; Giavalisco, P.; Kehr, J.: Functional analysis of Brassica napus phloem protein and ribonucleoprotein complexes. New Phytologist (2016)
  9. 9.
    Salem, M.A.; Jueppner, J.; Bajdzienko, K.; Giavalisco, P.: Protocol: A fast, comprehensive and reproducible one-step extraction method for the rapid preparation of polar and semi-polar metabolites, lipids, proteins, starch and cell wall polymers from a single sample. Plant Methods 12 (1), 45 (2016)
  10. 10.
    Alseekh, S.; Tohge, T.; Wendenburg, R.; Scossa, F.; Omranian, N.; Li, J.; Kleessen, S.; Giavalisco, P.; Pleban, T.; Mueller-Roeber, B. et al.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Identification and mode of inheritance of quantitative trait Loci for secondary metabolite abundance in tomato. The Plant Cell 27 (3), S. 485 - 512 (2015)
  11. 11.
    Avin-Wittenberg, T.; Bajdzienko, K.; Wittenberg, G.; Alseekh, S.; Tohge, T.; Bock, R.; Giavalisco, P.; Fernie, A. R.: Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation. The Plant Cell 27 (2), S. 306 - 322 (2015)
  12. 12.
    Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Sherwood, C. C.; Hof, P. R. et al.; Ely, J. J.; Li, Y.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues. Neuron 85 (4), S. 695 - 702 (2015)
  13. 13.
    Bromke, M. A.; Hochmuth, A.; Tohge, T.; Fernie, A. R.; Giavalisco, P.; Burgos, A.; Willmitzer, L.; Brotman, Y.: Liquid chromatography high-resolution mass spectrometry for fatty acid profiling. The Plant Journal 81 (3), S. 529 - 536 (2015)
  14. 14.
    Kleessen, S.; Irgang, S.; Klie, S.; Giavalisco, P.; Nikoloski, Z.: Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment. The Plant Journal 81 (5), S. 822 - 835 (2015)
  15. 15.
    Li, N.; Gügel, I. L.; Giavalisco, P.; Zeisler, V.; Schreiber, L.; Soll, J.; Philippar, K.: FAX1, a Novel Membrane Protein Mediating Plastid Fatty Acid Export. PLoS Biology 13 (2), e1002053 (2015)
  16. 16.
    Sharma, D. K.; Gautam, K.; Jueppner, J.; Giavalisco, P.; Rihko-Struckmann, L.; Pareek, A.; Sundmacher, K.: UPLC-MS analysis of Chlamydomonas reinhardtii and Scenedesmus obliquus lipid extracts and their possible metabolic roles. Journal of Applied Phycology 27 (3), S. 1149 - 1159 (2015)
  17. 17.
    Sharma, D. K.; Gautam, K.; Jueppner, J.; Giavalisco, P.; Rihko-Struckmann, L.; Pareek, A.; Sundmacher, K.: UPLC-MS analysis of Chlamydomonas reinhardtii and Scenedesmus obliquus lipid extracts and their possible metabolic roles. Journal of applied phycology 27 (3), S. 1149 - 1159 (2015)
  18. 18.
    Vallarino, J. G.; Osorio, S.; Bombarely, A.; Casanal, A.; Cruz-Rus, E.; Sanchez-Sevilla, J. F.; Amaya, I.; Giavalisco, P.; Fernie, A. R.; Botella, M. A. et al.; Valpuesta, V.: Central role of FaGAMYB in the transition of the strawberry receptacle from development to ripening. The New phytologist 208 (2), S. 482 - 496 (2015)
  19. 19.
    Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Pieszek, R.; Sherwood, C. C. et al.; Hof, P. R.; Ely, J. J.; Steinhauser, D.; Willmitzer, L.; Bangsbo, J.; Hansson, O.; Call, J.; Giavalisco, P.; Khaitovich, P.: Exceptional Evolutionary Divergence of Human Muscle and Brain Metabolomes Parallels Human Cognitive and Physical Uniqueness. PLoS Biology 12 (5), e1001871 (2014)
  20. 20.
    Delgado, R.; Munoz, Y.; Pena-Cortes, H.; Giavalisco, P.; Bacigalupo, J.: Diacylglycerol Activates the Light-Dependent Channel TRP in the Photosensitive Microvilli of Drosophila melanogaster Photoreceptors. The Journal of Neuroscience 34 (19), S. 6679 - 6686 (2014)
  21. 21.
    Hauck, O. K.; Scharnberg, J.; Escobar, N. M.; Wanner, G.; Giavalisco, P.; Witte, C.-P.: Uric Acid Accumulation in an Arabidopsis Urate Oxidase Mutant Impairs Seedling Establishment by Blocking Peroxisome Maintenance. Plant Cell 26 (7), S. 3090 - 3100 (2014)
  22. 22.
    Khrameeva, E. E.; Bozek, K.; He, L.; Yan, Z.; Jiang, X.; Wei, Y.; Tang, K.; Gelfand, M. S.; Prüfer, K.; Kelso, J. F. et al.; Pääbo, S.; Giavalisco, P.; Lachmann, M.; Khaitovich, P.: Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans. Nature Communications (2014)
  23. 23.
    Klein, O.; Strohschein, K.; Nebrich, G.; Oetjen, J.; Trede, D.; Thiele, H.; Alexandrov, T.; Giavalisco, P.; Duda, G. N.; von Roth, P. et al.; Geissler, S.; Klose, J.; Winkler, T.: MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures. Proteomics 14 (20), S. 2249 - 2260 (2014)
  24. 24.
    Kuppusamy, T.; Giavalisco, P.; Arvidsson, S.; Sulpice, R.; Stitt, M.; Finnegan, P. M.; Scheible, W.-R.; Lambers, H.; Jost, R.: Lipid Biosynthesis and Protein Concentration Respond Uniquely to Phosphate Supply during Leaf Development in Highly Phosphorus-Efficient Hakea prostrata. Plant Physiology 166 (4), S. 1891 - 911 (2014)
  25. 25.
    Schroeder, F.; Lisso, J.; Obata, T.; Erban, A.; Maximova, E.; Giavalisco, P.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Muessig, C.: Consequences of induced brassinosteroid deficiency in Arabidopsis leaves. BMC Plant Biology 14, 309 (2014)
  26. 26.
    Wulff-Zottele, C.; Hesse, H.; Fisahn, J.; Bromke, M. A.; Vera-Villalobos, H.; Li, Y.; Frenzel, F.; Giavalisco, P.; Ribera-Fonseca, A.; Zunino, L. et al.; Caruso, I.; Stohmann, E.; de la Luz Mora, M.: Sulphate fertilization ameliorates long-term aluminum toxicity symptoms in perennial ryegrass (Lolium perenne). Plant Physiology and Biochemistry 83, S. 88 - 99 (2014)
  27. 27.
    Yadav, U. P.; Yadav, U. P.; Ivakov, A.; Feil, R.; Duan, G. Y.; Walther, D.; Giavalisco, P.; Piques, M.; Carillo , P.; Hubberten, H. M. et al.; Stitt, M.; Lunn, J. E.: The sucrose–trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P. Journal of Experimental Botany (2014)
  28. 28.
    Adhikari, E.; Lee, D. K.; Giavalisco, P.; Sieburth, L. E.: Long-Distance Signaling in bypass1 Mutants: Bioassay Development Reveals the bps Signal to Be a Metabolite. Molecular Plant 6 (1), S. 164 - 173 (2013)
  29. 29.
    Antonio, C.; Mustafa, N. R.; Osorio, S.; Tohge, T.; Giavalisco, P.; Willmitzer, L.; Rischer, H.; Oksman-Caldentey, K. M.; Verpoorte, R.; Fernie, A. R.: Analysis of the interface between primary and secondary metabolism in Catharanthus roseus cell cultures using 13C-stable isotope feeding and coupled mass spectrometry. Molecular Plant 6 (2), S. 581 - 584 (2013)
  30. 30.
    Bromke, M. A.; Giavalisco, P.; Willmitzer, L.; Hesse, H.: Metabolic Analysis of Adaptation to Short-Term Changes in Culture Conditions of the Marine Diatom Thalassiosira pseudonana. PLoS One (2013)
  31. 31.
    Caldana, C.; Li, Y.; Leisse, A.; Zhang, Y.; Bartholomaeus, L.; Fernie, A. R.; Willmitzer, L.; Giavalisco, P.: Systemic Analysis of Inducible Target of Rapamycin Mutants Reveal a General Metabolic Switch Controlling Growth in Arabidopsis thaliana. The Plant Journal 73 (6), S. 897 - 909 (2013)
  32. 32.
    Gray, J. W.; Nelson Dittrich, A. C.; Chen, S.; Avila, J.; Giavalisco, P.; Devarenne, T. P.: Two Pdk1 phosphorylation sites on the plant cell death suppressor Adi3 contribute to substrate phosphorylation. Biochimica et Biophysica Acta 1834 (6), S. 1099 - 1106 (2013)
  33. 33.
    Sulpice, R.; Ishihara, H.; Schlereth, A.; Cawthray, G. R.; Encke, B.; Giavalisco, P.; Ivakov, A.; Arrivault, S.; Jost, R.; Krohn, N. et al.; Kuo, J.; Laliberte, E.; Pearse, S. J.; Raven, J. A.; Scheible, W.-R.; Teste, F.; Veneklaas, E. J.; Stitt, M.; Lambers, H.: Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant, Cell and Environment (2013)
  34. 34.
    Trost, G.; Vi, S. L.; Czesnick, H.; Lange, P.; Holton, N.; Giavalisco, P.; Zipfel, C.; Kappel, C.; Lenhard, M.: Arabidopsis poly(A) polymerase PAPS1 limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4. The Plant Journal (2013)
  35. 35.
    Watanabe, M.; Balazadeh, S.; Tohge, T.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162 (3), S. 1290 - 1310 (2013)
  36. 36.
    Zhang, Y.; Persson, S.; Giavalisco, P.: Differential Regulation of Carbon Partitioning by the Central Growth Regulator Target of Rapamycin (TOR). Molecular Plant (2013)
  37. 37.
    Degenkolbe, T.; Giavalisco, P.; Zuther, E.; Seiwert, B.; Hincha, D. K.; Willmitzer, L.: Differential remodeling of the lipidome during cold acclimation in natural accessions of Arabidopsis thaliana. The Plant Journal 72, S. 972 - 982 (2012)
  38. 38.
    Kueger, S.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P.: High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions. The Plant Journal 70 (1), S. 39 - 50 (2012)
  39. 39.
    Lambers, H.; Cawthray, G. R.; Giavalisco, P.; Kuo, J.; Laliberte, E.; Pearse, S. J.; Scheible, W.-R.; Stitt, M.; Teste, F.; Turner, B. L.: Proteaceae from severely phosphorus-impoverished soils extensively replace phospholipids with galactolipids and sulfolipids during leaf development to achieve a high photosynthetic phosphorus-use-efficiency. New Phytologist 196 (4), S. 1098 - 1108 (2012)
  40. 40.
    Burgos, A.; Szymanski, J.; Seiwert, B.; Degenkolbe, T.; Hannah, M. A.; Giavalisco, P.; Willmitzer, L.: Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light. The Plant Journal 66 (4), S. 656 - 668 (2011)
  41. 41.
    Csukasi, F.; Osorio, S.; Gutierrez, J. R.; Kitamura, J.; Giavalisco, P.; Nakajima, M.; Fernie, A. R.; Rathjen, J. P.; Botella, M. A.; Valpuesta, V. et al.; Medina-Escobar, N.: Gibberellin biosynthesis and signalling during development of the strawberry receptacle. New Phytologist 191 (2), S. 376 - 390 (2011)
  42. 42.
    Fu, X.; Giavalisco, P.; Liu, X. L.; Catchpole, G.; Fu, N.; Ning, Z. B.; Guo, S.; Yan, Z.; Somel, M.; Paabo, S. et al.; Zeng, R.; Willmitzer, L.; Khaitovich, P.: Rapid metabolic evolution in human prefrontal cortex. Proceedings of the National Academy of Sciences of the United States of America 108 (15), S. 6181 - 6186 (2011)
  43. 43.
    Giavalisco, P.; Li, Y.; Matthes, A.; Eckhardt, A.; Hubberten, H.-M.; Hesse, H.; Segu, S.; Hummel, J.; Koehl, K. I.; Willmitzer, L.: Elemental formula annotation of polar and lipophilic metabolites using 13C, 15N and 34S isotope labelling, in combination with high-resolution mass spectrometry. The Plant Journal 68 (2), S. 364 - 376 (2011)
  44. 44.
    Huege, J.; Krall, L.; Steinhauser, M.-C.; Giavalisco, P.; Rippka, R.; de Marsac, N. T.; Steinhauser, D.: Sample amount alternatives for data adjustment in comparative cyanobacterial metabolomics. Analytical and Bioanalytical Chemistry 399 (10), S. 3503 - 3517 (2011)
  45. 45.
    Hummel, J.; Segu, S.; Li, Y.; Irgang, S.; Jueppner, J.; Giavalisco, P.: Ultra performance liquid chromatography and high resolution mass spectrometry for the analysis of plant lipids. Frontiers in Plant Science 2, S. 54 (2011)
  46. 46.
    Klie, S.; Krueger, S.; Krall, L.; Giavalisco, P.; Fluegge, U.-I.; Willmitzer, L.; Steinhauser, D.: Analysis of the compartmentalized metabolome – a validation of the non-aqueous fractionation technique. Frontiers in Plant Science 2, S. 55 (2011)
  47. 47.
    Krueger, S.; Giavalisco, P.; Krall, L.; Steinhauser, M.-C.; Buessis, D.; Usadel, B.; Fluegge, U.-I.; Fernie, A. R.; Willmitzer, L.; Steinhauser, D.: A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome. PLoS One 6 (3), S. e17806 (2011)
  48. 48.
    Lisec, J.; Romisch-Margl, L.; Nikoloski, Z.; Piepho, H. P.; Giavalisco, P.; Selbig, J.; Gierl, A.; Willmitzer, L.: Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns. The Plant Journal 68 (2), S. 326 - 336 (2011)
  49. 49.
    Osorio, S.; Bombarely, A.; Giavalisco, P.; Usadel, B.; Stephens, C.; Araguez, I.; Medina-Escobar, N.; Botella, M. A.; Fernie, A. R.; Valpuesta, V.: Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit. Journal of Experimental Botany 62 (8), S. 2855 - 2873 (2011)
  50. 50.
    Tohge, T.; Ramos, M. S.; Nunes-Nesi, A.; Mutwil, M.; Giavalisco, P.; Steinhauser, D.; Schellenberg, M.; Willmitzer, L.; Persson, S.; Martinoia, E. et al.; Fernie, A. R.: Toward the storage metabolome: profiling the barley vacuole. Plant Physiology 157 (3), S. 1469 - 1482 (2011)
 
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