All Publications

2451.

Journal Article

Nikoloski, Z.; Grimbs, S.; Klie, S.; Selbig, J.: Complexity of automated gene annotation. Biosystems 104 (1), pp. 1 - 8 (2011)

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2452.

Journal Article

Nunes-Nesi, A.; Araujo, W. L.; Fernie, A. R.: Targeting Mitochondrial Metabolism and Machinery as a Means to Enhance Photosynthesis. Plant Physiology 155 (1), pp. 101 - 107 (2011)

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2453.

Journal Article

Obata, T.; Matthes, A.; Koszior, S.; Lehmann, M.; Araujo, W. L.; Bock, R.; Sweetlove, L. J.; Fernie, A. R.: Alteration of mitochondrial protein complexes in relation to metabolic regulation under short-term oxidative stress in Arabidopsis seedlings. Phytochemistry 72 (10), pp. 1081 - 1091 (2011)

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2454.

Journal Article

Osorio, S.; Alba, R.; Damasceno, C. M. B.; Lopez-Casado, G.; Lohse, M.; Zanor, M. I.; Tohge, T.; Usadel, B.; Rose, J. K. C.; Fei, Z. J. et al.; Giovannoni, J. J.; Fernie, A. R.: Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions. Plant Physiology 157 (1), pp. 405 - 425 (2011)

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2455.

Journal Article

Osorio, S.; Bombarely, A.; Giavalisco, P.; Usadel, B.; Stephens, C.; Araguez, I.; Medina-Escobar, N.; Botella, M. A.; Fernie, A. R.; Valpuesta, V.: Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit. Journal of Experimental Botany 62 (8), pp. 2855 - 2873 (2011)

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2456.

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Parlitz, S.; Kunze , R.; Mueller-Roeber, B.; Balazadeh, S.: Regulation of photosynthesis and transcription factor expression by leaf shading and re-illumination in Arabidopsis thaliana leaves. Journal of Plant Physiology 168 (12), pp. 1311 - 1319 (2011)

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2457.

Journal Article

Pertl, H.; Rittmann, S.; Schulze, W. X.; Obermeyer, G.: Identification of lily pollen 14-3-3 isoforms and their subcellular and time-dependent expression profile. Journal of Biological Chemistry 392 (3), pp. 249 - 262 (2011)

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2458.

Journal Article

Petersen, K.; Bock, R.: High-level expression of a suite of thermostable cell wall-degrading enzymes from the chloroplast genome. Plant Molecular Biology 76 (3-5), pp. 311 - 321 (2011)

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2459.

Journal Article

Petersen, K.; Schöttler, M. A.; Karcher, D.; Thiele, W.; Bock, R.: Elimination of a group II intron from a plastid gene causes a mutant phenotype. Nucleic Acids Research 39 (12), pp. 5181 - 5192 (2011)

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2460.

Journal Article

Ponnu, J.; Wahl, V.; Schmid, M.: Trehalose-6-phosphate: connecting plant metabolism and development. Frontiers in Plant Science 2, 70 (2011)

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2461.

Journal Article

Popova, A. V.; Hincha, D.: Thermotropic phase behavior and headgroup interactions of the nonbilayer lipids phosphatidylethanolamine and monogalactosyldiacylglycerol in the dry state. BMC Biophysics 4, p. 11 (2011)

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2462.

Journal Article

Popova, A. V.; Hundertmark, M.; Seckler, R.; Hincha, D. K.: Structural transitions in the intrinsically disordered plant dehydration stress protein LEA7 upon drying are modulated by the presence of membranes. Biochimica Et Biophysica Acta-Biomembranes 1808 (7), pp. 1879 - 1887 (2011)

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2463.

Journal Article

Quadrana, L.; Rodriguez, M. C.; Lopez, M.; Bermudez, L.; Nunes-Nesi, A.; Fernie, A. R.; Descalzo, A.; Asis, R.; Rossi, M.; Asurmendi, S. et al.; Carrari, F.: Coupling Virus-Induced Gene Silencing to Exogenous Green Fluorescence Protein Expression Provides a Highly Efficient System for Functional Genomics in Arabidopsis and across All Stages of Tomato Fruit Development. Plant Physiology 156 (3), pp. 1278 - 1291 (2011)

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2464.

Journal Article

Ramirez-Aguilar, S. J.; Keuthe, M.; Rocha, M.; Fedyaev, V. V.; Kramp, K.; Gupta, K. J.; Rasmusson, A. G.; Schulze, W. X.; van Dongen, J. T.: The Composition of Plant Mitochondrial Supercomplexes Changes with Oxygen Availability. Journal of Biological Chemistry 286 (50), pp. 43045 - 43053 (2011)

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2465.

Journal Article

Rashke, M.; Boycheva, S.; Crèvecoeur, M.; Nunes-Nesi, A.; Witt, S.; Fernie, A. R.; Amrhein, N.; Fitzpatrick, T. B.: Enhanced levels of vitamin B6 increase aerial organ size and positively affect stress tolerance in Arabidopsis. The Plant Journal 66 (3), pp. 414 - 432 (2011)

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2466.

Journal Article

Rautengarten, C.; Ebert, B.; Herter, T.; Petzold, C. J.; Ishii, T.; Mukhopadhyay, A.; Usadel, B.; Scheller, H. V.: The Interconversion of UDP-Arabinopyranose and UDP-Arabinofuranose Is Indispensable for Plant Development in Arabidopsis. Plant Cell 23 (4), pp. 1373 - 1390 (2011)

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2467.

Journal Article

Rauwolf, U.; Greiner, S.; Mracek, J.; Rauwolf, M.; Golczyk, H.; Mohler, V.; Herrmann, R. G.; Meurer, J.: Uncoupling of sexual reproduction from homologous recombination in homozygous Oenothera species. Heredity 107 (1), pp. 87 - 94 (2011)

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2468.

Journal Article

Reiland, S.; Grossmann, J.; Baerenfaller, K.; Gehrig, P.; Nunes-Nesi, A.; Fernie, A. R.; Gruissem, W.; Baginsky, S.: Integrated proteome and metabolite analysis of the de-etiolation process in plastids from rice (Oryza sativa L.). Proteomics 11 (9), pp. 1751 - 1763 (2011)

MPG.PuRe

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2469.

Journal Article

Riegler, H.; Geserick, C.; Zrenner, R.: Arabidopsis thaliana nucleosidase mutants provide new insights into nucleoside degradation. New Phytologist 191 (2), pp. 349 - 359 (2011)

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2470.

Journal Article

Rohrmann, J.; Tohge, T.; Alba, R.; Osorio, S.; Caldana, C.; McQuinn, R.; Arvidsson, S.; van der Merwe, M. J.; Riano-Pachon, D. M.; Mueller-Roeber, B. et al.; Fei, Z.; Nunes-Nesi, A.; Giovannoni, J. J.; Fernie, A. R.: Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68 (6), pp. 999 - 1013 (2011)

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2471.

Journal Article

Roszak, P.; Köhler, C.: Polycomb group proteins are required to couple seed coat initiation to fertilization. Proceedings of the National Academy of Sciences of the United States of America 108 (51), pp. 20826 - 20831 (2011)

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2472.

Journal Article

Rott, M.; Martins, N. F.; Thiele, W.; Lein, W.; Bock, R.; Kraemer, D. M.; Schöttler, M. A.: ATP Synthase Repression in Tobacco Restricts Photosynthetic Electron Transport, CO2 Assimilation, and Plant Growth by Overacidification of the Thylakoid Lumen. The Plant Cell 23 (1), pp. 304 - 321 (2011)

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2473.

Journal Article

Rudovich, N. N.; Nikiforova, V. J.; Otto, B.; Pivovarova, O.; Gogebakan, O.; Erban, A.; Mohlig, M.; Weickert, M. O.; Spranger, J.; Tschop, M. H. et al.; Willmitzer, L.; Nauck, M.; Pfeiffer, A. F. H.: Metabolomic linkage reveals functional interaction between glucose-dependent insulinotropic polypeptide and ghrelin in humans. American Journal of Physiology-Endocrinology and Metabolism 301 (4), pp. E608 - E617 (2011)

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2474.

Journal Article

Ruprecht, C.; Mutwil, M.; Saxe, F.; Eder, M.; Nikoloski, Z.; Persson, S.: Large-scale co-expression approach to dissect secondary cell wall formation across plant species. Frontiers in Plant Science 2, p. 23 (2011)

MPG.PuRe

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2475.

Journal Article

Ryngajllo, M.; Childs, L.; Lohse, M.; Giorgi, F. M.; Lude, A.; Selbig, J.; Usadel, B.: SLocX: predicting subcellular localization of Arabidopsis proteins leveraging gene expression data. Frontiers in Plant Science 2, p. 43 (2011)

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2476.

Journal Article

Salome, P. A.; Bomblies, K.; Laitinen, R. A.; Yant, L.; Mott, R.; Weigel, D.: Genetic architecture of flowering-time variation in Arabidopsis thaliana. Genetics 188 (2), pp. 421 - 433 (2011)

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2477.

Journal Article

Sampathkumar, A.; Lindeboom, J. J.; Debolt, S.; Gutierrez, R.; Ehrhardt, D. W.; Ketelaar, T.; Persson, S.: Live Cell Imaging Reveals Structural Associations between the Actin and Microtubule Cytoskeleton in Arabidopsis. Plant Cell 23 (6), pp. 2302 - 2313 (2011)

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2478.

Journal Article

Sanchez, D. H.; Pieckenstain, F. L.; Escaray, F.; Erban, A.; Kraemer, U.; Udvardi, M. K.; Kopka, J.: Comparative ionomics and metabolomics in extremophile and glycophytic Lotus species under salt stress challenge the metabolic pre-adaptation hypothesis. Plant Cell and Environment 34 (4), pp. 605 - 617 (2011)

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2479.

Journal Article

Sanchez, D. H.; Pieckenstain, F. L.; Szymanski, J.; Erban, A.; Bromke, M.; Hannah, M. A.; Kraemer, U.; Kopka, J.; Udvardi, M. K.: Comparative Functional Genomics of Salt Stress in Related Model and Cultivated Plants Identifies and Overcomes Limitations to Translational Genomics. PLoS One 6 (2), p. e17094 (2011)

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2480.

Journal Article

Sandmann, M.; Skłodowski, K.; Gajdanowicz, P.; Michard, E.; Rocha, M.; Gomez-Porras, J. L.; González, W.; Correa, L. G. G.; Ramirez-Aguilar, S. J.; Cuin, T. A. et al.; van Dongen, J. T.; Thibaud, J.-B.; Dreyer, I.: The K (+) battery-regulating Arabidopsis K(+) channel AKT2 is under the control of multiple post-translational steps. Plant Signaling & Behavior 6 (4), pp. 558 - 562 (2011)

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2481.

Journal Article

Scharff, L. B.; Childs, L.; Walther, D.; Bock, R.: Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites. PLoS Genetics 7 (6), p. e1002155 (2011)

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2482.

Journal Article

Scheffel, A.; Poulsen, N.; Shian, S.; Kroeger, N.: Nanopatterned protein microrings from a diatom that direct silica morphogenesis. Proceedings of the National Academy of Sciences of the United States of America 108 (8), pp. 3175 - 3180 (2011)

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2483.

Journal Article

Schroeder, F.; Lisso, J.; Muessig, C.: EXORDIUM-LIKE1 Promotes Growth during Low Carbon Availability in Arabidopsis. Plant Physiology 156 (3), pp. 1620 - 1630 (2011)

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2484.

Journal Article

Schudoma, C.; Larhlimi, A.; Walther, D.: The influence of the local sequence environment on RNA loop structures. Rna-a Publication of the Rna Society 17 (7), pp. 1247 - 1257 (2011)

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2485.

Journal Article

Schwachtje, J.; Karojet, S.; Thormaehlen, I.; Bernholz, C.; Kunz, S.; Brouwer, S.; Schwochow, M.; Koehl, K. I.; van Dongen, J. T.: A Naturally Associated Rhizobacterium of Arabidopsis thaliana Induces a Starvation-Like Transcriptional Response while Promoting Growth. PLoS One 6 (12), p. e29382 (2011)

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2486.

Journal Article

Schwarz, D.; Nodop, A.; Huege, J.; Purfurst, S.; Forchhammer, K.; Michel, K. P.; Bauwe, H.; Kopka, J.; Hagemann, M.: Metabolic and Transcriptomic Phenotyping of Inorganic Carbon Acclimation in the Cyanobacterium Synechococcus elongatus PCC 7942. Plant Physiology 155 (4), pp. 1640 - 1655 (2011)

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2487.

Journal Article

Skirycz, A.; Claeys, H.; De Bodt, S.; Oikawa, A.; Shinoda, S.; Andriankaja, M.; Maleux, K.; Eloy, N. B.; Coppens, F.; Yoo, S.-D. et al.; Saito, K.; Inze, D.: Pause-and-Stop: The Effects of Osmotic Stress on Cell Proliferation during Early Leaf Development in Arabidopsis and a Role for Ethylene Signaling in Cell Cycle Arrest. Plant Cell 23 (5), pp. 1876 - 1888 (2011)

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2488.

Journal Article

Skirycz, A.; Memmi, S.; de Bodt, S.; Maleux, K.; Obata, T.; Fernie, A. R.; Devreese, B.; Inze, D.: A Reciprocal (15)N-Labeling Proteomic Analysis of Expanding Arabidopsis Leaves Subjected to Osmotic Stress Indicates Importance of Mitochondria in Preserving Plastid Functions. Journal of Proteome Research 10 (3), pp. 1018 - 1029 (2011)

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2489.

Journal Article

Skirycz, A.; Vandenbroucke, K.; Clauw, P.; Maleux, K.; De Meyer, B.; Dhondt, S.; Pucci, A.; Gonzalez, N.; Hoeberichts, F.; Tognetti, V. B. et al.; Galbiati, M.; Tonelli, C.; Van Breusegem, F.; Vuylsteke, M.; Inze, D.: Survival and growth of Arabidopsis plants given limited water are not equal. Nature Biotechnology 29 (3), pp. 212 - 214 (2011)

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2490.

Journal Article

Steinbrenner, A. D.; Gomez, S.; Osorio, S.; Fernie, A. R.; Orians, C. M.: Herbivore-Induced Changes in Tomato (Solanum lycopersicum) Primary Metabolism: A Whole Plant Perspective. Journal of Chemical Ecology 37 (12), pp. 1294 - 1303 (2011)

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2491.

Journal Article

Steinhauser, M.-C.; Steinhauser, D.; Gibon, Y.; Bolger, M.; Arrivault, S.; Usadel, B.; Zamir, D.; Fernie, A. R.; Stitt, M.: Identification of Enzyme Activity Quantitative Trait Loci in a Solanum lycopersicum X Solanum pennellii Introgression Line Population. Plant Physiology 157 (3), pp. 998 - 1014 (2011)

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2492.

Journal Article

Strenkert, D.; Schmollinger, S.; Schroda, M.: Protocol: methodology for chromatin immunoprecipitation (ChIP) in Chlamydomonas reinhardtii. Plant Methods 7, p. 35 (2011)

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2493.

Journal Article

Strenkert, D.; Schmollinger, S.; Sommer, F.; Schulz-Raffelt, M.; Schroda, M.: Transcription Factor-Dependent Chromatin Remodeling at Heat Shock and Copper-Responsive Promoters in Chlamydomonas reinhardtii. Plant Cell 23 (6), pp. 2285 - 2301 (2011)

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2494.

Journal Article

Stuttmann, J.; Hubberten, H.-M.; Rietz, S.; Kaur, J.; Muskett, P.; Guerois, R.; Bednarek, P.; Hoefgen, R.; Parker, J. E.: Perturbation of Arabidopsis Amino Acid Metabolism Causes Incompatibility with the Adapted Biotrophic Pathogen Hyaloperonospora arabidopsidis. Plant Cell 23 (7), pp. 2788 - 2803 (2011)

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2495.

Journal Article

Thelin, L.; Mutwil, M.; Sommarin, M.; Persson, S.: Diverging functions among calreticulin isoforms in higher plants. Plant Signaling & Behavior 6 (6), pp. 905 - 910 (2011)

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2496.

Journal Article

Thiel, J.; Rolletschek, H.; Friedel, S.; Lunn, J. E.; Nguyen, T. H.; Feil, R.; Tschiersch, H.; Mueller, M.; Borisjuk, L.: Seed-specific elevation of non-symbiotic hemoglobin AtHb1: beneficial effects and underlying molecular networks in Arabidopsis thaliana. BMC Plant Biology 11, p. 48 (2011)

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2497.

Journal Article

Timm, S.; Florian, A.; Jahnke, K.; Nunes-Nesi, A.; Fernie, A. R.; Bauwe, H.: The Hydroxypyruvate-Reducing System in Arabidopsis: Multiple Enzymes for the Same End. Plant Physiology 155 (2), pp. 694 - 705 (2011)

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2498.

Journal Article

Toepel, J.; Albaum, S. P.; Arvidsson, S.; Goesmann, A.; La Russa, M.; Rogge, K.; Kruse, O.: Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics 12, p. 579 (2011)

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2499.

Journal Article

Tohge, T.; Mettler, T.; Arrivault, S.; Carroll, A. J.; Stitt, M.; Fernie, A. R.: From models to crop species: caveats and solutions for translational metabolomics. Frontiers in Plant Science 2, p. 61 (2011)

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2500.

Journal Article

Tohge, T.; Ramos, M. S.; Nunes-Nesi, A.; Mutwil, M.; Giavalisco, P.; Steinhauser, D.; Schellenberg, M.; Willmitzer, L.; Persson, S.; Martinoia, E. et al.; Fernie, A. R.: Toward the storage metabolome: profiling the barley vacuole. Plant Physiology 157 (3), pp. 1469 - 1482 (2011)

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Journal Article (4078)