Journal Article (4067)

2301.
Journal Article
Stitt, M.: Progress in understanding and engineering primary plant metabolism. Current opinion in biotechnology 24 (2), pp. 229 - 238 (2012)
2302.
Journal Article
Stitt, M.; Zeeman, S. C.: Starch turnover: pathways, regulation and role in growth. Current Opinion in Plant Biology 15 (3), pp. 282 - 292 (2012)
2303.
Journal Article
Szecowka, M.; Osorio, S.; Obata, T.; Araujo, W. L.; Rohrmann, J.; Nunes-Nesi, A.; Fernie, A. R.: Decreasing the Mitochondrial Synthesis of Malate in Potato Tubers Does Not Affect Plastidial Starch Synthesis, Suggesting That the Physiological Regulation of ADPglucose Pyrophosphorylase Is Context Dependent. Plant Physiology 160 (4), pp. 2227 - 2238 (2012)
2304.
Journal Article
Thieme, C. J.; Schudoma, C.; May, P.; Walther, D.: Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5'-Position Alone. Frontiers in plant science 3, p. 272 (2012)
2305.
Journal Article
Tiessen, A.; Nerlich, A.; Faix, B.; Hummer, C.; Fox, S.; Trafford, K.; Weber, H.; Weschke, W.; Geigenberger, P.: Subcellular analysis of starch metabolism in developing barley seeds using a non-aqueous fractionation method. Journal of Experimental Botany 63 (5), pp. 2071 - 2087 (2012)
2306.
Journal Article
Tiller, N.; Weingartner, M.; Thiele, W.; Maximova, E.; Schöttler, M. A.; Bock, R.: The plastid-specific ribosomal proteins of Arabidopsis thaliana can be divided into non-essential proteins and genuine ribosomal proteins. The Plant Journal 69 (2), pp. 302 - 316 (2012)
2307.
Journal Article
Timm, S.; Florian, A.; Arrivault, S.; Stitt, M.; Fernie, A. R.; Bauwe, H.: Glycine decarboxylase controls photosynthesis and plant growth. FEBS Letters 586 (20), pp. 3692 - 3697 (2012)
2308.
Journal Article
Timm, S.; Mielewczik, M.; Florian, A.; Frankenbach, S.; Dreissen, A.; Hocken, N.; Fernie, A. R.; Walter, A.; Bauwe, H.: High-to-Low CO2 Acclimation Reveals Plasticity of the Photorespiratory Pathway and Indicates Regulatory Links to Cellular Metabolism of Arabidopsis. PLoS One 7 (8), p. e42809 (2012)
2309.
Journal Article
Toepfer, N.; Jozefczuk, S.; Nikoloski, Z.: Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli. BMC Systems Biology 6 (1), p. 148 (2012)
2310.
Journal Article
Tohge, T.; Fernie, A. R.: Annotation of plant gene function via combined genomics, metabolomics and informatics. Journal of visualized experiments (64), e3487, p. e3487 (2012)
2311.
Journal Article
Toubiana, D.; Semel, Y.; Tohge, T.; Beleggia, R.; Cattivelli, L.; Rosental, L.; Nikoloski, Z.; Zamir, D.; Fernie, A. R.; Fait, A.: Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations. PLoS Genetics 8 (3), p. e1002612 (2012)
2312.
Journal Article
Trofimova, L. K.; Araujo, W. L.; Strokina, A. A.; Fernie, A. R.; Bettendorff, L.; Bunik, V. I.: Consequences of the alpha-Ketoglutarate Dehydrogenase Inhibition for Neuronal Metabolism and Survival: Implications for Neurodegenerative Diseases. Current Medicinal Chemistry 19 (34), pp. 5895 - 5906 (2012)
2313.
Journal Article
Vandesteene, L.; López-Galvis, L.; Vanneste, K.; Feil, R.; Lammens, W.; Rolland, F.; Lunn, J. E.; Avonce, N.; Beeckman, T.; van Dijck, P.: Expansive evolution of the TREHALOSE-6-PHOSPHATE PHOSPHATASE gene family in Arabidopsis thaliana. Plant Physiology 160 (2), pp. 884 - 896 (2012)
2314.
Journal Article
Vasilevski, A.; Giorgi, F. M.; Bertinetti, L.; Usadel, B.: LASSO modeling of the Arabidopsis thaliana seed/seedling transcriptome: a model case for detection of novel mucilage and pectin metabolism genes. Molecular Biosystems 8 (10), pp. 2566 - 2574 (2012)
2315.
Journal Article
Wang, W. H.; Koehler, B.; Cao, F. Q.; Liu, G. W.; Gong, Y. Y.; Sheng, S.; Song, Q. C.; Cheng, X. Y.; Garnett, T.; Okamoto, M. et al.; Qin, R.; Mueller-Roeber, B.; Tester, M.; Liu, L. H.: Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis. New Phytologist 193 (2), pp. 432 - 444 (2012)
2316.
Journal Article
Winck, F. V.; Riano-Pachon, D. M.; Sommer, F.; Rupprecht, J.; Mueller-Roeber, B.: The nuclear proteome of the green alga Chlamydomonas reinhardtii. Proteomics 12 (1), pp. 95 - 100 (2012)
2317.
Journal Article
Witt, S.; Galicia, L.; Lisec, J.; Cairns, J.; Tiessen, A.; Araus, J. L.; Palacios-Rojas, N.; Fernie, A. R.: Metabolic and Phenotypic Responses of Greenhouse-Grown Maize Hybrids to Experimentally Controlled Drought Stress. Molecular Plant 5 (2), pp. 401 - 417 (2012)
2318.
Journal Article
Wormit, A.; Butt, S. M.; Chairam, I.; McKenna, J. F.; Nunes-Nesi, A.; Kjaer, L.; O'Donnelly, K.; Fernie, A. R.; Woscholski, R.; Barter, M. C. et al.; Hamann, T.: Osmosensitive changes of carbohydrate metabolism in response to cellulose biosynthesis inhibition. Plant Physiology 159 (1), pp. 105 - 117 (2012)
2319.
Journal Article
Wu, A.; Allu, A. D.; Garapati, P.; Siddiqui, H.; Dortay, H.; Zanor, M. I.; Asensi-Fabado, M. A.; Munne-Bosch, S.; Antonio, C.; Tohge, T. et al.; Fernie, A. R.; Kaufmann, K.; Xue, G. P.; Mueller-Roeber, B.; Balazadeh, S.: JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis. The Plant Cell 24 (2), pp. 482 - 506 (2012)
2320.
Journal Article
Xue, W.; Ruprecht, C.; Street, N.; Hematy, K.; Chang, C.; Frommer, W. B.; Persson, S.; Niittyla, T.: Paramutation-Like Interaction of T-DNA Loci in Arabidopsis. PLoS One 7 (12), p. e51651 (2012)
2321.
Journal Article
Zauber, H.; Mosler, S.; von Hessberg, A.; Schulze, W. X.: Dynamics of salivary proteins and metabolites during extreme endurance sports - a case study. Proteomics 12 (13), pp. 2221 - 2235 (2012)
2322.
Journal Article
Zauber, H.; Schulze, W. X.: Proteomics Wants cRacker: Automated Standardized Data Analysis of LC-MS Derived Proteomic Data. Journal of Proteome Research 11 (11), pp. 5548 - 5555 (2012)
2323.
Journal Article
Zhang, J.; Ruf, S.; Hasse, C.; Childs, L.; Scharff, L. B.; Bock, R.: Identification of cis-elements conferring high levels of gene expression in non-green plastids. Plant Journal 72 (1), pp. 115 - 128 (2012)
2324.
Journal Article
Zhu, Q.; Dugardeyn, J.; Zhang, C.; Takenaka, M.; Kuehn, K.; Craddock, C.; Smalle, J.; Karampelias, M.; Denecke, J.; Peters, J. et al.; Gerats, T.; Brennicke, A.; Eastmond, P.; Meyer, E. H.; Van der Straeten, D.: SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism. The Plant Journal 71 (5), pp. 836 - 849 (2012)
2325.
Journal Article
Zoschke, R.; Kroeger, T.; Belcher, S.; Schöttler, M. A.; Barkan, A.; Schmitz-Linneweber, C.: The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA. The Plant Journal 72 (4), pp. 547 - 558 (2012)
2326.
Journal Article
Zuther, E.; Schulz, E.; Childs, L. H.; Hincha, D. K.: Clinal variation in the non-acclimated and cold-acclimated freezing tolerance of Arabidopsis thaliana accessions. Plant Cell and Environment 35 (10), pp. 1860 - 1878 (2012)
2327.
Journal Article
Diaz, C.; Kusano, M.; Sulpice, R.; Araki, M.; Redestig, H.; Saito, K.; Stitt, M.; Shin, R.: Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic processes. BMC Systems Biology 5, p. 192 - 192 (2011)
2328.
Journal Article
Bar-Even, A.; Noor, E.; Flamholz, A.; Buescher, J. M.; Milo, R.: Hydrophobicity and Charge Shape Cellular Metabolite Concentrations. PLoS Computational Biology 7 (10), e1002166 (2011)
2329.
Journal Article
Pélissier, T.; Clavel, M.; Chaparro, C.; Pouch-Pélissier, M.-N.; Vaucheret, H.; Deragon, J.-M.: Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis. RNA: A Publication of the RNA Society 17 (8), pp. 1502 - 1510 (2011)
2330.
Journal Article
Gutjahr, C.; Novero, M.; Welham, T.; Wang, T.; Bonfante, P.: Root starch accumulation in response to arbuscular mycorrhizal colonization differs among Lotus japonicus starch mutants. Planta 234 (3), pp. 639 - 646 (2011)
2331.
Journal Article
Dortay, H.; Akula, U. M.; Westphal, C.; Sittig, M.; Mueller-Roeber, B.: High-Throughput Protein Expression Using a Combination of Ligation-Independent Cloning (LIC) and Infrared Fluorescent Protein (IFP) Detection. PLoS One 6 (4), p. e18900 (2011)
2332.
Journal Article
Aichinger, E.; Villar, C.B.R.; di Mambro, R.; Sabatini, S.; Köhler, C.: The CHD3 chromatin remodeler PICKLE and polycomb group proteins antagonistically regulate meristem activity in the Arabidopsis root. The Plant Cell 23 (3), pp. 1047 - 1060 (2011)
2333.
Journal Article
Allen, A. E.; Dupont, C. L.; Obornik, M.; Horak, A.; Nunes-Nesi, A.; McCrow, J. P.; Zheng, H.; Johnson, D. A.; Hu, H. H.; Fernie, A. R. et al.; Bowler, C.: Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature 473 (7346), pp. 203 - 209 (2011)
2334.
Journal Article
Almeida, J.; Quadrana, L.; Asis, R.; Setta, N.; de Godoy, F.; Bermudez, L.; Otaiza, S. N.; da Silva, J. V. C.; Fernie, A. R.; Carrari, F. et al.; Rossi, M.: Genetic dissection of vitamin E biosynthesis in tomato. Journal of Experimental Botany 62 (11), pp. 3781 - 3798 (2011)
2335.
Journal Article
Angelovici, R.; Fait, A.; Fernie, A. R.; Galili, G.: A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination. New Phytologist 189 (1), pp. 148 - 159 (2011)
2336.
Journal Article
Araujo, W. L.; Ishizaki, K.; Nunes-Nesi, A.; Tohge, T.; Larson, T. R.; Krahnert, I.; Balbo, I.; Witt, S.; Doermann, P.; Graham, I. A. et al.; Leaver, C. J.; Fernie, A. R.: Analysis of a Range of Catabolic Mutants Provides Evidence That Phytanoyl-Coenzyme A Does Not Act as a Substrate of the Electron-Transfer Flavoprotein/Electron-Transfer Flavoprotein:Ubiquinone Oxidoreductase Complex in Arabidopsis during Dark-Induced Senescence. Plant Physiology 157 (1), pp. 55 - 69 (2011)
2337.
Journal Article
Araujo, W. L.; Nunes-Nesi, A.; Fernie, A. R.: Fumarate: Multiple functions of a simple metabolite. Phytochemistry 72 (9), pp. 838 - 843 (2011)
2338.
Journal Article
Araujo, W. L.; Nunes-Nesi, A.; Osorio, S.; Usadel, B.; Fuentes, D.; Nagy, R.; Balbo, I.; Lehmann, M.; Studart-Witkowski, C.; Tohge, T. et al.; Martinoia, E.; Jordana, X.; DaMatta, F. M.; Fernie, A. R.: Antisense Inhibition of the Iron-Sulphur Subunit of Succinate Dehydrogenase Enhances Photosynthesis and Growth in Tomato via an Organic Acid-Mediated Effect on Stomatal Aperture. The Plant Cell 23 (2), pp. 600 - 627 (2011)
2339.
Journal Article
Armbruster, U.; Pesaresi, P.; Pribil, M.; Hertle, A.; Leister, D.: Update on Chloroplast Research: New Tools, New Topics, and New Trends. Molecular Plant 4 (1), pp. 1 - 16 (2011)
2340.
Journal Article
Arvidsson, S.; Perez-Rodriguez, P.; Mueller-Roeber, B.: A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytologist 191 (3), pp. 895 - 907 (2011)
2341.
Journal Article
Balazadeh, S.; Kwasniewski, M.; Caldana, C.; Mehrnia, M.; Zanor, M. I.; Xue, G. P.; Mueller-Roeber, B.: ORS1, an H(2)O(2)-Responsive NAC Transcription Factor, Controls Senescence in Arabidopsis thaliana. Molecular Plant 4 (2), pp. 346 - 360 (2011)
2342.
Journal Article
Banks, J. A.; Nishiyama, T.; Hasebe, M.; Bowman, J. L.; Gribskov, M.; dePamphilis, C.; Albert, V. A.; Aono, N.; Aoyama, T.; Ambrose, B. A. et al.; Ashton, N. W.; Axtell, M. J.; Barker, E.; Barker, M. S.; Bennetzen, J. L.; Bonawitz, N. D.; Chapple, C.; Cheng, C. Y.; Correa, L. G. G.; Dacre, M.; DeBarry, J.; Dreyer, I.; Elias, M.; Engstrom, E. M.; Estelle, M.; Feng, L.; Finet, C.; Floyd, S. K.; Frommer, W. B.; Fujita, T.; Gramzow, L.; Gutensohn, M.; Harholt, J.; Hattori, M.; Heyl, A.; Hirai, T.; Hiwatashi, Y.; Ishikawa, M.; Iwata, M.; Karol, K. G.; Koehler, B.; Kolukisaoglu, U.; Kubo, M.; Kurata, T.; Lalonde, S.; Li, K. J.; Li, Y.; Litt, A.; Lyons, E.; Manning, G.; Maruyama, T.; Michael, T. P.; Mikami, K.; Miyazaki, S.; Morinaga, S.; Murata, T.; Mueller-Roeber, B.; Nelson, D. R.; Obara, M.; Oguri, Y.; Olmstead, R. G.; Onodera, N.; Petersen, B. L.; Pils, B.; Prigge, M.; Rensing, S. A.; Riano-Pachon, D. M.; Roberts, A. W.; Sato, Y.; Scheller, H. V.; Schulz, B.; Schulz, C.; Shakirov, E. V.; Shibagaki, N.; Shinohara, N.; Shippen, D. E.; Sorensen, I.; Sotooka, R.; Sugimoto, N.; Sugita, M.; Sumikawa, N.; Tanurdzic, M.; Theissen, G.; Ulvskov, P.; Wakazuki, S.; Weng, J. K.; Willats, W. W. G. T.; Wipf, D.; Wolf, P. G.; Yang, L. X.; Zimmer, A. D.; Zhu, Q. H.; Mitros, T.; Hellsten, U.; Loque, D.; Otillar, R.; Salamov, A.; Schmutz, J.; Shapiro, H.; Lindquist, E.,. e. a.: The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science 332 (6032), pp. 960 - 963 (2011)
2343.
Journal Article
Bar-Even, A.; Noor, E.; Savir, Y.; Liebermeister, W.; Davidi, D.; Tawfik, D. S.; Milo, R.: The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters. Biochemistry 50 (21), pp. 4402 - 4410 (2011)
2344.
Journal Article
Barratt, D. H. P.; Koelling, K.; Graf, A.; Pike, M.; Calder, G.; Findlay, K.; Zeeman, S. C.; Smith, A. M.: Callose Synthase GSL7 Is Necessary for Normal Phloem Transport and Inflorescence Growth in Arabidopsis. Plant Physiology 155 (1), pp. 328 - 341 (2011)
2345.
Journal Article
Basler, G.; Ebenhoeh, O.; Selbig, J.; Nikoloski, Z.: Mass-balanced randomization of metabolic networks. Bioinformatics 27 (10), pp. 1397 - 1403 (2011)
2346.
Journal Article
Basler, G.; Grimbs, S.; Ebenhoeh, O.; Selbig, J.; Nikoloski, Z.: Evolutionary significance of metabolic network properties. Journal of the Royal Society Interface 9 (71), pp. 1168 - 1176 (2011)
2347.
Journal Article
Basler, G.; Nikoloski, Z.: JMassBalance: mass-balanced randomization and analysis of metabolic networks. Bioinformatics 27 (19), pp. 2761 - 2762 (2011)
2348.
Journal Article
Bazzini, A. A.; Manacorda, C. A.; Tohge, T.; Conti, G.; Rodriguez, M. C.; Nunes-Nesi, A.; Villanueva, S.; Fernie, A. R.; Carrari, F.; Asurmendi, S.: Metabolic and miRNA Profiling of TMV Infected Plants Reveals Biphasic Temporal Changes. PLoS One 6 (12), p. e28466 (2011)
2349.
Journal Article
Bloem, E.; Rubekin, K.; Haneklaus, S.; Banfalvi, Z.; Hesse, H.; Schnug, E.: H(2)S and COS Gas Exchange of Transgenic Potato Lines with Modified Expression Levels of Enzymes Involved in Sulphur Metabolism. Journal of Agronomy and Crop Science 197 (4), pp. 311 - 321 (2011)
2350.
Journal Article
Branscheid, A.; Devers, E. A.; May, P.; Krajinski, F.: Distribution pattern of small RNA and degradome reads provides information on miRNA gene structure and regulation. Plant Signaling & Behavior 6 (10), pp. 1609 - 1611 (2011)
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