All Publications

2101.

Journal Article

Nunes-Nesi, A.; Araujo, W. L.; Obata, T.; Fernie, A. R.: Regulation of the mitochondrial tricarboxylic acid cycle. Current Opinion in Plant Biology 16 (3), pp. 335 - 343 (2013)

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2102.

Journal Article

Obata, T.; Schoenefeld, S.; Krahnert, I.; Bergmann, S.; Scheffel, A.; Fernie, A.: Gas-Chromatography Mass-Spectrometry (GC-MS) Based Metabolite Profiling Reveals Mannitol as a Major Storage Carbohydrate in the Coccolithophorid Alga Emiliania huxleyi. Metabolites 3 (1), pp. 168 - 184 (2013)

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2103.

Journal Article

Omranian, N.; Klie, S.; Mueller-Roeber, B.; Nikoloski, Z.: Network-Based Segmentation of Biological Multivariate Time Series. PLoS One 8 (5), p. e62974 (2013)

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2104.

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Osorio, S.; Nunes-Nesi, A.; Stratmann, M.; Fernie, A. R.: Pyrophosphate levels strongly influence ascorbate and starch content in tomato fruit. Frontiers in Plant Science 4 (2013)

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2105.

Journal Article

Osorio, S.; Vallarino, J. G.; Szecowka, M.; Ufaz, S.; Tzin, V.; Angelovici, R.; Galili, G.; Fernie, A. R.: Alteration of the interconversion of pyruvate and malate in the plastid or cytosol of ripening tomato fruit invokes diverse consequences on sugar but similar effects on cellular organic Acid, metabolism, and transitory starch accumulation. Plant Physiology 161 (2), pp. 628 - 643 (2013)

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2106.

Journal Article

Pal, S. K.; Liput, M.; Piques, M.; Ishihara, H.; Obata, T.; Martins, M. C.; Sulpice, R.; van Dongen, J. T.; Fernie, A. R.; Yadav, U. P. et al.; Lunn, J. E.; Usadel, B.; Stitt, M.: Diurnal changes of polysome loading track sucrose content in the rosette of wildtype Arabidopsis and the starchless pgm mutant. Plant Physiology 162 (3), pp. 1246 - 1265 (2013)

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2107.

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Paparelli, E.; Parlanti, S.; Gonzali, S.; Novi, G.; Mariotti, L.; Ceccarelli, N.; van Dongen, J. T.; Koelling, K.; Zeeman, S. C.; Perata, P.: Nighttime Sugar Starvation Orchestrates Gibberellin Biosynthesis and Plant Growth in Arabidopsis. The Plant Cell 25 (10), pp. 3760 - 3769 (2013)

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2108.

Journal Article

Perez-Delgado, C. M.; Garcia-Calderon, M.; Sanchez, D. H.; Udvardi, M. K.; Kopka, J.; Marquez, A. J.; Betti, M.: Transcriptomic and Metabolic Changes Associated with Photorespiratory Ammonium Accumulation in the Model Legume Lotus japonicus. Plant Physiology 162 (4), pp. 1834 - 1848 (2013)

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2109.

Journal Article

Perez-Perez, J. M.; Esteve-Bruna, D.; Gonzalez-Bayon, R.; Kangasjarvi, S.; Caldana, C.; Hannah, M. A.; Willmitzer, L.; Ponce, M. R.; Micol, J. L.: Functional redundancy and divergence within the Arabidopsis RETICULATA-RELATED gene family. Plant Physiology 162 (2), pp. 589 - 603 (2013)

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2110.

Journal Article

Peterhansel, C.; Krause, K.; Braun, H. P.; Espie, G. S.; Fernie, A. R.; Hanson, D. T.; Keech, O.; Maurino, V. G.; Mielewczik, M.; Sage, R. F.: Engineering photorespiration: current state and future possibilities. Plant Biology 15 (4), pp. 754 - 758 (2013)

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2111.

Journal Article

Petrov, V.; Schippers, J.; Benina, M.; Minkov, I.; Mueller-Roeber, B.; Gechev, T.: In search for new players of the oxidative stress network by phenotyping an Arabidopsis T-DNA mutant collection on reactive oxygen species-eliciting chemicals. Plant Omics 6 (1), pp. 46 - 54 (2013)

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2112.

Journal Article

Popova, A. V.; Hincha, D. K.: Interactions of the amphiphiles arbutin and tryptophan with phosphatidylcholine and phosphatidylethanolamine bilayers in the dry state. BMC BIOPHYSICS 6 (9) (2013)

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2113.

Journal Article

Poulsen, N.; Scheffel, A.; Sheppard, V. C.; Chesley, P. M.; Kroeger, N.: Pentalysine Clusters Mediate Silica Targeting of Silaffins in Thalassiosira pseudonana. Journal of Biological Chemistry 288 (28), pp. 20100 - 20109 (2013)

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2114.

Journal Article

Quadrana, L.; Almeida, J.; Otaiza, S. N.; Duffy, T.; Correa da Silva, J. V.; de Godoy, F.; Asis, R.; Bermudez, L.; Fernie, A. R.; Carrari, F. et al.; Rossi, M.: Transcriptional regulation of tocopherol biosynthesis in tomato. Plant Molecular Biology 81 (3), pp. 309 - 325 (2013)

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2115.

Journal Article

Ramos, B.; Gonzalez-Melendi, P.; Sanchez-Vallet, A.; Sanchez-Rodriguez, C.; Lopez, G.; Molina, A.: Functional genomics tools to decipher the pathogenicity mechanisms of the necrotrophic fungus Plectosphaerella cucumerina in Arabidopsis thaliana. Molecular Plant Pathology 14 (1), pp. 44 - 57 (2013)

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2116.

Journal Article

Rauf, M.; Arif, M.; Dortay, H.; Matallana-Ramirez, L. P.; Waters, M. T.; Gil Nam, H.; Lim, P. O.; Mueller-Roeber, B.; Balazadeh, S.: ORE1 balances leaf senescence against maintenance by antagonizing G2-like-mediated transcription. EMBO Reports 14 (4), pp. 382 - 388 (2013)

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2117.

Journal Article

Ribeiro, D. M.; Mueller-Roeber, B.; Schippers, J. H.: Promotion of growth by elevated carbon dioxide is coordinated through a flexible transcriptional network in Arabidopsis. Plant Signaling & Behavior 8 (3), p. e23356 (2013)

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2118.

Journal Article

Riedelsheimer, C.; Brotman, Y.; Meret, M.; Melchinger, A. E.; Willmitzer, L.: The maize leaf lipidome shows multilevel genetic control and high predictive value for agronomic traits. Scientific Reports 3, 2479 (2013)

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2119.

Journal Article

Sade, D.; Brotman, Y.; Eybishtz, A.; Cuadros-Inostroza, A.; Fernie, A. R.; Willmitzer, L.; Czosnek, H.: Involvement of the hexose transporter gene LeHT1 and of sugars in resistance of tomato to Tomato yellow leaf curl virus. Molecular Plant 6 (5), pp. 1707 - 1710 (2013)

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2120.

Journal Article

Saito, K.; Yonekura-Sakakibara, K.; Nakabayashi, R.; Higashi, Y.; Yamazaki, M.; Tohge, T.; Fernie, A. R.: The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity. Plant Physiology and Biochemistry 72, pp. 21 - 34 (2013)

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2121.

Journal Article

Sampathkumar, A.; Gutierrez, R.; McFarlane, H.; Bringmann, M.; Lindeboom, J.; Emons, A. M.; Samuels, L.; Ketelaar, T.; Ehrhardt, D.; Persson, S.: Patterning and life-time of plasma membrane localized cellulose synthase is dependent on actin organization in Arabidopsis interphase cells. Plant Physiology 162 (2), pp. 675 - 688 (2013)

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2122.

Journal Article

Schmidt, S.; Dethloff, F.; Beine-Golovchuk, O.; Kopka, J.: The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiology 163 (4), pp. 1623 - 1639 (2013)

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2123.

Journal Article

Schmollinger, S.; Schulz-Raffelt, M.; Strenkert, D.; Veyel, D.; Vallon, O.; Schroda, M.: Dissecting the Heat Stress Response in Chlamydomonas by Pharmaceutical and RNAi Approaches Reveals Conserved and Novel Aspects. Molecular Plant 6 (6), pp. 1795 - 1813 (2013)

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2124.

Journal Article

Schwarz, D.; Orf, I.; Kopka, J.; Hagemann, M.: Recent Applications of Metabolomics Toward Cyanobacteria. Metabolites 3, pp. 72 - 100 (2013)

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2125.

Journal Article

Serra, T. S.; Figueiredo, D.D.; Cordeiro, A. M.; Almeida, D. M.; Lourenço, T.; Abreu, I. A.; Sebastián, A.; Fernandes, L.; Contreras-Moreira, B.; Oliveira, M. M. et al.; Saibo, N. J. M.: OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Molecular Biology 82 (4), pp. 439 - 455 (2013)

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2126.

Journal Article

Shanmugabalaji, V.; Besagni, C.; Piller, L. E.; Douet, V.; Ruf, S.; Bock, R.; Kessler, F.: Dual targeting of a mature plastoglobulin/fibrillin fusion protein to chloroplast plastoglobules and thylakoids in transplastomic tobacco plants. Plant Molecular Biology 81 (1-2), pp. 13 - 25 (2013)

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2127.

Journal Article

Sieh, D.; Watanabe, M.; Devers, E. A.; Brueckner, F.; Hoefgen, R.; Krajinski, F.: The arbuscular mycorrhizal symbiosis influences sulfur starvation responses of Medicago truncatula. New Phytologist 197 (2), pp. 606 - 616 (2013)

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2128.

Journal Article

Spielbauer, G.; Li, L.; Romisch-Margl, L.; Do, P. T.; Fouquet, R.; Fernie, A. R.; Eisenreich, W.; Gierl, A.; Settles, A. M.: Chloroplast-localized 6-phosphogluconate dehydrogenase is critical for maize endosperm starch accumulation. Journal of Experimental Botany 64 (8), pp. 2231 - 2242 (2013)

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2129.

Journal Article

Strehmel, N.; Kopka, J.; Scheel, D.; Böttcher, C.: Annotating unknown components from GC/EI-MS-based metabolite profiling experiments using GC/APCI(+)-QTOFMS. Metabolics 10 (2), pp. 324 - 336 (2013)

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2130.

Journal Article

Sulpice, R.; Nikoloski, Z.; Tschoep, H.; Antonio, C.; Kleeson, S.; Lahrlimi, A.; Selbig, J.; Hirofumi, I.; Gibon, Y.; Fernie, A. R. et al.; Stitt, M.: Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions. Plant Physiology 162 (1), pp. 347 - 363 (2013)

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2131.

Journal Article

Sweetlove, L. J.; Fernie, A. R.: The Spatial Organization of Metabolism Within the Plant Cell. Annual Review of Plant Biology 64, pp. 723 - 746 (2013)

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2132.

Journal Article

Szecowka, M.; Heise, R.; Tohge, T.; Nunes-Nesi, A.; Vosloh, D.; Huege, J.; Feil, R.; Lunn, J.; Nikoloski, Z.; Stitt, M. et al.; Fernie, A. R.; Arrivault, S.: Metabolic Fluxes in an Illuminated Arabidopsis Rosette. The Plant Cell 25 (2), pp. 694 - 714 (2013)

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2133.

Journal Article

Szymanski, W. G.; Kierszniowska, S.; Schulze, W. X.: Metabolic Labeling and Membrane Fractionation for Comparative Proteomic Analysis of Arabidopsis thaliana Suspension Cell Cultures. Journal of visualized experiments: JoVE (79) (2013)

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2134.

Journal Article

Szymanski, W. G.; Kierszniowska, S.; Schulze, W. X.: Metabolic labeling and membrane fractionation for comparative proteomic analysis of Arabidopsis thaliana suspension cell cultures. Journal of visualized experiments: JoVE (79), e50535 (2013)

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2135.

Journal Article

Tahir, J.; Watanabe, M.; Jing, H. C.; Hunter, D. A.; Tohge, T.; Nunes-Nesi, A.; Brotman, Y.; Fernie, A. R.; Hoefgen, R.; Dijkwel, P. P.: Activation of R-mediated innate immunity and disease susceptibility is affected by mutations in a cytosolic O-acetylserine (thiol) lyase in Arabidopsis. The Plant Journal 73 (1), pp. 118 - 130 (2013)

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2136.

Journal Article

Timm, S.; Florian, A.; Wittmiss, M.; Jahnke, A.; Hagemann, M.; Fernie, A.; Bauwe, H.: Serine acts as metabolic signal for the transcriptional control of photorespiration-related genes in Arabidopsis thaliana. Plant Physiology 162 (1), pp. 379 - 389 (2013)

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2137.

Journal Article

Tisserant, E.; Malbreil, M.; Kuo, A.; Kohler, A.; Symeonidi, A.; Balestrini, R.; Charron, P.; Duensing, N.; Frey, N. F. D.; Gianinazzi-Pearson, V. et al.; Gilbert, L. B.; Handa, Y.; Herr, J. R.; Hijri, M.; Koul, R.; Kawaguchi, M.; Krajinski, F.; Lammers, P. J.; Masclauxm, F. G.; Murat, C.; Morin, E.; Ndikumana, S.; Pagni, M.; Petitpierre, D.; Requena, N.; Rosikiewicz, P.; Riley, R.; Saito, K.; Clemente, H. S.; Shapiro, H.; Van Tuinen, D.; Becard, G.; Bonfante, P.; Paszkowski, U.; Shachar-Hill, Y. Y.; Tuskan, G. A.; Young, P. W.; Sanders, I. R.; Henrissat, B.; Rensing, S. A.; Grigoriev, I. V.; Corradi, N.; Roux, C.; Martin, F.: Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 110 (50), pp. 20117 - 20122 (2013)

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2138.

Journal Article

Tohge, T.; Watanabe, M.; Hoefgen, R.; Fernie, A. R.: Shikimate and phenylalanine biosynthesis in the green lineage. Frontiers in Plant Science 4, p. 62 (2013)

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2139.

Journal Article

van Houtte, H.; Vandesteene, L.; López-Galvis, L.; Lemmens, L.; Kissel, E.; Carpentier, S.; Feil, R.; Avonce, N.; Beeckman, T.; Lunn, J. E. et al.; van Dijck, P.: Over-expression of the trehalase gene AtTRE1 leads to increased drought stress tolerance in Arabidopsis and is involved in ABA-induced stomatal closure. Plant Physiology 161 (3), pp. 1158 - 1171 (2013)

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2140.

Journal Article

Wahl, V.; Ponnu, J.; Schlereth, A.; Arrivault, S.; Langenecker, T.; Franke, A.; Feil, R.; Lunn, J.; Stitt, M.; Schmid, M.: Regulation of Flowering by Trehalose-6-Phosphate Signaling in Arabidopsis thaliana. Science 339 (6120), pp. 704 - 707 (2013)

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2141.

Journal Article

Walentowski, H.; Schulze, E. D.; Teodosiu, M.; Bouriaud, O.; von Hessberg, A.; Bussler, H.; Baldauf, L.; Schulze, I.; Waeldchen, J.; Boecker, R. et al.; Herzog, S.; Schulze, W. X.: Sustainable forest management of Natura 2000 sites: a case study from a private forest in the Romanian Southern Carpathians. ANNALS OF FOREST RESEARCH 56 (1), pp. 217 - 245 (2013)

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2142.

Journal Article

Watanabe, M.; Balazadeh, S.; Tohge, T.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162 (3), pp. 1290 - 1310 (2013)

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2143.

Journal Article

Winck, F. V.; Arvidsson, S.; Mauricio Riano-Pachon, D.; Hempel, S.; Koseska, A.; Nikoloski, Z.; Urbina Gomez, D. A.; Rupprecht, J.; Mueller-Roeber, B.: Genome-Wide Identification of Regulatory Elements and Reconstruction of Gene Regulatory Networks of the Green Alga Chlamydomonas reinhardtii under Carbon Deprivation. PLoS One 8 (11), e79909 (2013)

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2144.

Journal Article

Wittenburg, D.; Melzer, N.; Willmitzer, L.; Lisec, J.; Kesting, U.; Reinsch, N.; Repsilber, D.: Milk metabolites and their genetic variability. Journal of Dairy Science 96 (4), pp. 2557 - 2569 (2013)

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2145.

Journal Article

Wu, X. N.; Sanchez-Rodriguez, C.; Pertl-Obermeyer, H.; Obermeyer, G.; Schulze, W. X.: Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis. Molecular and Cellular Proteomics 12 (10), pp. 2856 - 2873 (2013)

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2146.

Journal Article

Xue, W.; Batushansky, A.; Toubiana, D.; Botnick, I.; Szymanski, J.; Khozin-Goldberg, I.; Nikoloski, Z.; Lewinsohn, E.; Fait, A.: The Investment in Scent: Time-Resolved Metabolic Processes in Developing Volatile-Producing Nigella sativa L. Seeds. PLoS One 8 (9), e73061 (2013)

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2147.

Journal Article

Zakharova, A.; Nikoloski, Z.; Koseska, A.: Dimensionality reduction of multistable biological systems. Bulletin of Mathematical Biology 75 (3), pp. 373 - 392 (2013)

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2148.

Journal Article

Zauber, H.; Schuler, V.; Schulze, W.: Systematic evaluation of reference protein normalization in proteomic experiments. Frontiers in plant science 4, p. 25 (2013)

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2149.

Journal Article

Zauber, H.; Schüler, V.; Schulze, W. X.: Systematic evaluation of reference protein normalization in proteomic experiments. Frontiers in plant science 4, p. 25 (2013)

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2150.

Journal Article

Zauber, H.; Szymanski, W. G.; Schulze, W. X.: Unraveling Sterol-dependent Membrane Phenotypes by Analysis of Protein Abundance-ratio Distributions in Different Membrane Fractions Under Biochemical and Endogenous Sterol Depletion. Molecular & cellular proteomics: MCP 12 (12), pp. 3732 - 3743 (2013)

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Journal Article (4076)