Journal Article (4067)

101.
Journal Article
Forner, J.; Kleinschmidt, D.; Meyer, E. H.; Gremmels, J.; Morbitzer, R.; Lahaye, T.; Schöttler, M. A.; Bock, R.: Targeted knockout of a conserved plant mitochondrial gene by genome editing. Nature Plants 9, pp. 1818 - 1831 (2023)
102.
Journal Article
Heinze, J.; Werger, L.; Ogden, M.; Heinken, T.; Hoefgen, R.; Weber, E.: Short wind pulses consistently change the morphology of roots, but not of shoots, across young plants of different growth forms. Stress-the International Journal on the Biology of Stress 3, 43 (2023)
103.
Journal Article
Incarbone, M.; Bradamante, G.; Pruckner, F.; Wegscheider, T.; Rozhon, W.; Nguyen, V.; Gutzat, R.; Mérai, Z.; Lendl, T.; MacFarlane, S. et al.; Nodine, M.; Scheid, O. M.: Salicylic acid and RNA interference mediate antiviral immunity of plant stem cells. Proceedings of the National Academy of Sciences of the United States of America 120 (42), e2302069120 (2023)
104.
Journal Article
Lamm, C. E.; Rabbi, I. Y.; Medeiros, D.B.; Rosado-Souza, L.; Pommerrenig, B.; Dahmani, I.; Rüscher, D.; Hofmann, J.; van Doorn; M., A. et al.; Schlereth, A.; Neuhaus, H. E.; Fernie, A. R.; Sonnewald, U.; Zierer, W.: Efficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes. The Plant Journal 116 (1), pp. 38 - 57 (2023)
105.
Journal Article
Nicolas, P.; Pattison, R. J.; Zheng, Y.; Lapidot-Cohen, T.; Brotman, Y.; Osorio, S.; Fernie, A. R.; Fei, Z.; Catalá, C.: Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism, and stress responses. Journal of Experimental Botany 74 (20), pp. 6331 - 6348 (2023)
106.
Journal Article
Pereira-Lima, Í.A.; Batista-Silva, W.; Siqueira, J.A.; Silva, M.F.; Medeiros, D.B.; Cavalcanti, J.H.; Gonçalves, J.F.D.C.; Ribeiro, D.M.; Fernie, A. R.; Nunes-Nesi, A. et al.; Araújo, W.L.: Differential Aluminum tolerance in Arabidopsis thaliana ecotypes is seemingly related to metabolite changes. Environmental and Experimental Botany 214, 105472 (2023)
107.
Journal Article
Sarmiento-Mañús, R.; Fontcuberta-Cervera, S.; González-Bayón, R.; Hannah, M. A.; Álvarez-Martínez, F. J.; Barrajón-Catalán, E.; Micol, V.; Quesada, V.; Ponce, M. R.; Micol, J. L.: Analysis of the Arabidopsis venosa4-0 Mutant Supports the Role of VENOSA4 in dNTP Metabolism. Plant Science 335, 111819 (2023)
108.
Journal Article
Segarra-Medina, C.; Alseekh, S.; Fernie, A. R.; Rambla, J. L.; Pérez-Clemente, R. M.; Gómez-Cádenas, A.; Zandalinas, S. I.: Abscisic acid promotes plant acclimation to the combination of salinity and high light stress. Plant Physiology and Biochemistry 203, 108008 (2023)
109.
Journal Article
Shan, N.; Zhang, Y.; Guo, Y.; Zhang, W.; Nie, J.; Fernie, A. R.; Sui, X.: Cucumber malate decarboxylase, CsNADP-ME2, functions in the balance of carbon and amino acid metabolism in fruit. Horticulture Research 10 (12), uhad216 (2023)
110.
Journal Article
Siodmak, A.; Martinez-Seidel, F.; Rayapuram, N.; Bazin, J.; Alhoraibi, H.; Gentry-Torfer, D.; Tabassum, N.; Sheikh, A. H.; Kise, J.; Blilou, I. et al.; Crespi, M.; Kopka, J.; Hirt, H.: Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Research 51 (21), pp. 11876 - 11892 (2023)
111.
Journal Article
Siqueira, J. A.; Zhang, Y.; Nunes-Nesi, A.; Fernie, A. R.; Araújo, W. L.: Beyond photorespiration: the significance of glycine and serine in leaf metabolism. Trends in Plant Science 28 (10), pp. 1092 - 1094 (2023)
112.
Journal Article
Sperschneider, J.; Yildirir, G.; Rizzi , Y. S.; Malar C, M.; Mayrand Nicol, A.; Sorwar, E.; Villeneuve-Laroche, M.; Chen, E. C. H.; Iwasaki, W.; Brauer, E. K. et al.; Bosnich, W.; Gutjahr, C.; Corradi, N.: Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions. Nature Microbiology 8, pp. 2142 - 2153 (2023)
113.
Journal Article
Steensma, P.; Eisenhut, M.; Colinas, M.; Rosado-Souza, L.; Fernie, A. R.; Weber, A. P. M.; Fitzpatrick, T. B.: PYRIDOX(AM)INE 5'-PHOSPHATE OXIDASE3 of Arabidopsis thaliana maintains carbon/nitrogen balance in distinct environmental conditions. Plant Physiology 193 (2), kiad411, pp. 1433 - 1455 (2023)
114.
Journal Article
Tong, H.; Laitinen, R.A.E.; Nikoloski, Z.: Predicting plasticity of rosette growth and metabolic fluxes in Arabidopsis thaliana. New Phytologist 240 (1), pp. 426 - 438 (2023)
115.
Journal Article
Wan, H.; Zhang, Y.; Wu, L.; Zhou, G.; Pan, L.; Fernie, A. R.; Ruan, Y.-L.: Evolution of cytosolic and organellar invertases empowered the colonization and thriving of land plants. Plant Physiology 193 (2), pp. 1227 - 1243 (2023)
116.
Journal Article
Weiszmann, J.; Walther, D.; Clauw, P.; Back, G.; Gunis, J.; Reichardt, I.; Koemeda, S.; Jez, J.; Nordborg, M.; Schwarzerova, J. et al.; Pierides, I.; Nägele, T.; Weckwerth, W.: Metabolome plasticity in 241 Arabidopsis thaliana accessions reveals evolutionary cold adaptation processes. Plant Physiology 193 (2), pp. 980 - 1000 (2023)
117.
Journal Article
Younis, I.Y.; Mohsen, E.; Ibrahim, R.M.; Fernie, A. R.; Alseekh, S.; Salem, M.A.: Non-targeted metabolomics and chemometrics for saffron (Crocus sativus L.) authentication and adulteration detection in relation to its anticholinesterase activity. Food Chemistry Advances 2, 100217 (2023)
118.
Journal Article
Aarabi, F.; Fernie, A. R.: Elucidating the role of ascorbate in light signaling. Trends in Plant Science 28 (9), pp. 978 - 980 (2023)
119.
Journal Article
Aarabi, F.; Fernie, A. R.: SPOTLIGHT: Ascorbate triggers the switch between cell division and cell differentiation in the Arabidopsis tapetum. Journal of Plant Physiology 288, 154058 (2023)
120.
Journal Article
Bezold, F.; Scheffer, J.; Wendering, P.; Razaghi-Moghadam, Z.; Trauth, J.; Pook, B.; Nußhär, H.; Hasenjäger, S.; Nikoloski, Z.; Essen, L.-O. et al.; Taxis, C.: Optogenetic control of Cdc48 for dynamic metabolic engineering in yeast. Metabolic Engineering 79, pp. 97 - 107 (2023)
121.
Journal Article
Collas, F.; Dronsella, B.; Kubis, A.; Schann, K.; Binder, S.; Arto, N.; Claassens, N.J.; Kensy, F.; Orsi, E.: Engineering the biological conversion of formate into crotonate in Cupriavidus necator. Metabolic Engineering 79, pp. 49 - 65 (2023)
122.
Journal Article
Figueroa, N. E.; Franz, P.; Luzarowski, M.; Martinez-Seidel, F.; Moreno, J.C.; Childs, D.; Ziemblicka, A.; Sampathkumar, A.; Andersen, T. G.; Tsiavaliaris, G. et al.; Kosmacz, M.; Skirycz, A.: Protein interactome of 3’,5’-cyclic adenosine monophosphate reveals its role in regulating the actin cytoskeleton. The Plant Journal 115 (5), pp. 1214 - 1230 (2023)
123.
Journal Article
Hashemi, S.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony. PLoS Computational Biology 19 (9), e1011489 (2023)
124.
Journal Article
Köhler, C.; Butel, N.: Plant development: How to kill the endosperm. Current Biology 33 (17), pp. R912 - R913 (2023)
125.
Journal Article
Langary, D.; Küken, A.; Nikoloski, Z.: The effective deficiency of biochemical networks. Scientific Reports 13, 14589 (2023)
126.
Journal Article
Li, R.; Tang, F.; Che, Y.; Fernie, A. R.; Zhou, Q.; Ding, Z.; Yao, Y.; Liu, J.; Wang, Y.; Hu, X. et al.; Guo, J.: MeGLYI-13, a Glyoxalase I Gene in Cassava, Enhances the Tolerance of Yeast and Arabidopsis to Zinc and Copper Stresses. Plants 12 (19), 3375 (2023)
127.
Journal Article
Qiu, Y.; Li, Z.; Walther, D.; Köhler, C.: Updated phylogeny and protein structure predictions revise the hypothesis on the origin of MADS-box transcription factors in land plants. Molecular Biology and Evolution 40 (9), msad194 (2023)
128.
Journal Article
Solis-Miranda, J.; Chodasiewicz, M.; Skirycz, A.; Fernie, A. R.; Moschou, P.; Bozhkov, P.; Gutierrez-Beltran, E.: Stress-related biomolecular condensates in plants. Plant Cell 35 (9), pp. 3187 - 3204 (2023)
129.
Journal Article
Tal, L.; Guercio, A. M.; Varshney, K.; Young, A.; Gutjahr, C.; Shabek, N.: C-terminal conformational changes in SCF-D3/MAX2 ubiquitin ligase are required for KAI2-mediated signaling. New Phytologist 239 (6), pp. 2067 - 2075 (2023)
130.
Journal Article
Thirumalaikumar, V.P.; Fernie, A. R.; Skirycz, A.: Untargeted Proteomics and Metabolomics Analysis of Plant Organ Development. Methods in molecular biology (Clifton, N.J.) 2698, pp. 75 - 85 (2023)
131.
Journal Article
Zayed, A.; Farag, M. A.; Mehring, A.; Salem, M. A.; Ibrahim, R. M.; Alseekh, S.; Fernie, A. R.; Ulber, R.: Methyl jasmonate elicitation effect on the metabolic profile of cambial meristematic cells culture derived from sweet basil (Ocimum basilicum L.) in relation to antioxidant activity: Untargeted metabolomics study in a time-based approach. Phytochemistry 213, 113777 (2023)
132.
Journal Article
Zhou, Q.; Li, R.; Fernie, A. R.; Che, Y.; Ding, Z.; Yao, Y.; Liu, J.; Wang, Y.; Hu, X.; Guo, J.: Integrated Analysis of Morphological, Physiological, Anatomical and Molecular Responses of Cassava Seedlings to Different Light Qualities. International Journal of Molecular Sciences 24 (18), 14224 (2023)
133.
Journal Article
Alseekh, S.; Karakas, E.; Zhu, F.; Wijesingha Ahchige, M.; Fernie, A. R.: Plant biochemical genetics in the multiomics era. Journal of Experimental Botany 74 (15), pp. 4293 - 4307 (2023)
134.
Journal Article
Arend, M.; Zimmer, D.; Xu, R.; Sommer, F.; Mühlhaus, T.; Nikoloski, Z.: Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale. Nature Communications 14 (1), 4781 (2023)
135.
Journal Article
Correa Cordoba, S.; Tong, H.; Burgos, A.; Zhu, F.; Alseekh, S.; Fernie, A. R.; Nikoloski, Z.: Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism. Nature Communications 14 (1), 4897 (2023)
136.
Journal Article
de Souza, L. P.; Bitocchi, E.; Papa, R.; Tohge, T.; Fernie, A. R.: Decreased metabolic diversity in common beans associated with domestication revealed by untargeted metabolomics, information theory, and molecular networking. The Plant Journal 115 (4), pp. 1021 - 1036 (2023)
137.
Journal Article
Garcia, F. H. S.; Domingues Júnior, A.P.; Lima Nogueira, M.; de Paula, S.; Ferreira, J.; Lavres, J.; Martins, S. J.; Fernie, A. R.; Kluge, R. A.: Impact of Leifsonia xyli subsp. xyli titer on nutritional status, and metabolism of sugar cane. Plant and Soil 493, pp. 341 - 354 (2023)
138.
Journal Article
Gramma, V.; Wahl, V.: RNA In Situ Hybridization on Plant Tissue Sections: Expression Analysis at Cellular Resolution. Methods in molecular biology (Clifton, N.J.) 2686 (2023)
139.
Journal Article
He, Y.; Zhang, K.; Li, S.; Lu, X.; Zhao, H.; Guan, C.; Huang, X.; Shi, Y.; Kang, Z.; Fan, Y. et al.; Li, W.; Chen, C.; Li, G.; Long, O.; Chen, Y.; Hu, M.; Cheng, J.; Xu, B.; Chapman, M. A.; Georgiev, M. I.; Fernie, A. R.; Zhou, M.: Multi-omics analysis reveals the molecular mechanisms underlying virulence in Rhizoctonia and jasmonic acid–mediated resistance in Tartary buckwheat (Fagopyrum tataricum). The Plant Cell 35 (8), pp. 2773 - 2798 (2023)
140.
Journal Article
Jing, Y.; Watanabe, M.; Aarabi, F.; Fernie, A. R.; Borghi, M.; Tohge, T.: Cross-Species Metabolomic Analyses In The Brassicaceae Reveals Common Responses To Ultraviolet-B Exposure. Plant and Cell Physiology 64 (12), pp. 1523 - 1533 (2023)
141.
Journal Article
Lima, V.F.; Freire, F.B.S.; Cândido-Sobrinho, S.A.; Porto, N.P.; Medeiros, D.B.; Erban, A.; Kopka, J.; Schwarzländer, M.; Fernie, A. R.; Daloso, D.M.: Unveiling the dark side of guard cell metabolism. Plant Physiology and Biochemistry 201, 107862 (2023)
142.
Journal Article
Segarra-Medina, C.; Pascual, L. S.; Alseekh, S.; Fernie, A. R.; Rambla, J. L.; Gómez-Cadenas, A.; Zandalinas, S. I.: Comparison of metabolomic reconfiguration between Columbia and Landsberg ecotypes subjected to the combination of high salinity and increased irradiance. BMC Plant Biology 23, 406 (2023)
143.
Journal Article
Tedesco, S.; Irisarri, P.; Teixeira Santos, M.; Fevereiro, P.; Pina, A.; Kragler, F.: Early detection of grapevine graft incompatibility: Insights into translocated and virus-induced incompatibility. Scientia Horticulturae 318, 112087 (2023)
144.
Journal Article
Yokoyama, R.: AOX in action—making plant mitochondrial metabolism special. Plant Physiology 192 (4), pp. 2585 - 2857 (2023)
145.
Journal Article
Babadi, F. S.; Razaghi-Moghadam, Z.; Zare-Mirakabad, F.; Nikoloski, Z.: Prediction of metabolite-protein interactions based on integration of machine learning and constraint-based modeling. Bioinformatics advances 3 (1), vbad098 (2023)
146.
Journal Article
Caldana, C.; Carrari, F.; Fernie, A. R.; Sampathkumar, A.: How metabolism and development are intertwined in space and time. The Plant Journal 116 (2), pp. 347 - 359 (2023)
147.
Journal Article
Chialva, M.; Patono, D.; de Souza, L. P.; Novero, M.; Vercellino, S.; Maghrebi, M.; Morgante, M.; Lovisolo, C.; Vigani, G.; Fernie, A. R. et al.; Fiorilli, V.; Lanfranco, L.; Bonfante, P.: The mycorrhizal root-shoot axis elicits Coffea arabica growth under low phosphate conditions. New Phytologist 239 (1), pp. 271 - 285 (2023)
148.
Journal Article
Chmielewski, M. W.; Naya, S.; Borghi, M.; Cortese, J.; Fernie, A. R.; Swartz, M. T.; Zografou, K.; Sewall, B. J.; Spigler, R. B.: Phenology and foraging bias contribute to sex-specific foraging patterns in the rare declining butterfly Argynnis idalia idalia. Ecology and Evolution 13 (7), e10287 (2023)
149.
Journal Article
Chmielewski, M.; Naya, S.; Borghi, M.; Cortese, J.; Fernie, A. R.; Swartz, M.; Zografou, K.; Sewall, B.; Spigler, R.: Phenology and foraging bias contribute to sex-specific foraging patterns in the rare declining butterfly Argynnis idalia idalia. Ecology and Evolution 13 (7), e10287 (2023)
150.
Journal Article
Dong, Y.; Gupta, S.; Wargent, J.J.; Putterill, J.; Macknight, R.C.; Gechev, T.S.; Mueller-Roeber, B.; Dijkwel, P.P.: Comparative Transcriptomics of Multi-Stress Responses in Pachycladon cheesemanii and Arabidopsis thaliana. International Journal of Molecular Sciences 24 (14), 11323 (2023)
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