Publications of Dirk Walther
Journal Article (90)
1.
Journal Article
15, 2792 (2024)
The thylakoid proton antiporter KEA3 regulates photosynthesis in response to the chloroplast energy status. Nature Communications 2.
Journal Article
241 (3), pp. 1144 - 1160 (2023)
Genomic imprints of unparalleled growth. New Phytologist 3.
Journal Article
5 (4), lqad097 (2023)
Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility. NAR: genomics and bioinformatics 4.
Journal Article
116 (4), pp. 1172 - 1193 (2023)
The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction. The Plant Journal 5.
Journal Article
193 (2), pp. 980 - 1000 (2023)
Metabolome plasticity in 241 Arabidopsis thaliana accessions reveals evolutionary cold adaptation processes. Plant Physiology 6.
Journal Article
40 (9), msad194 (2023)
Updated phylogeny and protein structure predictions revise the hypothesis on the origin of MADS-box transcription factors in land plants. Molecular Biology and Evolution 7.
Journal Article
39 (12), msac222 (2022)
Emergence of novel RNA editing sites by changes in the binding affinity of a conserved PPR protein. Molecular Biology and Evolution 8.
Journal Article
45 (11), pp. 3305 - 3321 (2022)
Comparative transcriptomics analysis reveals a calcineurin B-like gene to positively regulate constitutive and acclimated freezing tolerance in potato. Plant, Cell and Environment 9.
Journal Article
4 (2), lqac027 (2022)
Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization. NAR: genomics and bioinformatics 10.
Journal Article
13, 849329 (2022)
PRI: Re-analysis of a public mass cytometry dataset reveals patterns of effective tumor treatments. Frontiers in immunology 11.
Journal Article
2 (1), vbac001 (2022)
Biclique extension as an effective approach to identify missing links in metabolic compound-protein interaction networks. Bioinformatics advances 12.
Journal Article
22, 605 (2021)
COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 13.
Journal Article
40 (15), e106800 (2021)
Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal 14.
Journal Article
22 (1), 390 (2021)
Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana. BMC Genomics 15.
Journal Article
19 (3), pp. 477 - 489 (2021)
Deciphering Transcriptional Regulators of Banana Fruit Ripening by Regulatory Network Analysis. Plant Biotechnology Journal 16.
Journal Article
22 (11), 6160 (2021)
Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 17.
Journal Article
22 (11), 6123 (2021)
Genome-wide approach to identify quantitative trait loci for drought tolerance in tetraploid potato (Solanum tuberosum L.). International Journal of Molecular Sciences 18.
Journal Article
48 (20), pp. 11347 - 11369 (2020)
Determinants of correlated expression of transcription factors and their target genes. Nucleic Acids Research 19.
Journal Article
10 (1), 7202 (2020)
Polymorphisms in miRNA binding sites involved in metabolic diseases in mice and humans. Scientific Reports 20.
Journal Article
11, 1071 (2020)
Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? Frontiers in Plant Science 21.
Journal Article
9 (3), 319 (2020)
Growth under fluctuating light reveals large trait variation in a panel of arabidopsis accessions. Plants 22.
Journal Article
21 (8), 2794 (2020)
Similar yet different–structural and functional diversity among arabidopsis thaliana LEA_4 proteins. International Journal of Molecular Sciences 23.
Journal Article
77, pp. 705 - 718 (2020)
A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 24.
Journal Article
43 (9), pp. 2066 - 2079 (2020)
Metabolomic markers and physiological adaptations for high phosphate utilization efficiency in rice. Plant, Cell and Environment 25.
Journal Article
180 (1), pp. 654 - 681 (2019)
Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves. Plant Physiology 26.
Journal Article
9 (6), 305 (2019)
Effect of Senescence Phenotypes and Nitrate Availability on Wheat Leaf Metabolome during Grain Filling. Agronomy 27.
Journal Article
116 (12), pp. 5665 - 5674 (2019)
Chloroplast competition is controlled by lipid biosynthesis in evening primroses. Proceedings of the National Academy of Sciences of the United States of America 28.
Journal Article
5 (5), pp. 525 - 538 (2019)
Control of retrograde signalling by protein import and cytosolic folding stress. Nature Plants 29.
Journal Article
176 (3), pp. 2251 - 2276 (2018)
Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiology 30.
Journal Article
46 (16), pp. 8114 - 8132 (2018)
A genome-wide scan for correlated mutations detects macromolecular and chromatin interactions in Arabidopsis thaliana. Nucleic Acids Research 31.
Journal Article
16 (4), pp. 939 - 950 (2018)
Metabolite and transcript markers for the prediction of potato drought tolerance. Plant Biotechnology Journal 32.
Journal Article
10, 51 (2018)
Promising Metabolite Profiles in the Plasma and CSF of Early Clinical Parkinson's Disease. Frontiers in Aging Neuroscience 33.
Journal Article
12, 226 (2018)
Metabolomic Profiles for Primary Progressive Multiple Sclerosis Stratification and Disease Course Monitoring. Frontiers in Human Neuroscience 34.
Journal Article
8, 2048 (2017)
Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply. Frontiers in Plant Science 35.
Journal Article
85 (1), pp. 78 - 92 (2017)
Towards understanding the crosstalk between protein post-translational modifications: Homo- and heterotypic PTM pair distances on protein surfaces are not random. Proteins: Structure, Function, and Bioinformatics 36.
Journal Article
91 (2), pp. 251 - 262 (2017)
Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal 37.
Journal Article
8, 1831 (2017)
Metabolic Pathway Assignment of Plant Genes based on Phylogenetic Profiling-A Feasibility Study. Frontiers in Plant Science 38.
Journal Article
84 (5), pp. 565 - 579 (2016)
Spatial proximity statistics suggest a regulatory role of protein phosphorylation on compound binding. Proteins-Structure Function and Bioinformatics 39.
Journal Article
2 (4), 16040 (2016)
Mobile RNAs convey the message. Nature Plants 40.
Journal Article
The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information. PLANT SYNTHETIC PROMOTERS: METHODS AND PROTOCOLS, pp. 31 - 47 (2016)
41.
Journal Article
17, 185 (2016)
The orientation of transcription factor binding site motifs in gene promoter regions: does it matter? BMC Genomics 42.
Journal Article
39 (11), pp. 2370 - 2389 (2016)
The drought response of potato reference cultivars with contrasting tolerance. Plant Cell Environment 43.
Journal Article
28 (6), pp. 1237 - 1249 (2016)
tRNA-Related Sequences Trigger Systemic mRNA Transport in Plants. Plant Cell 44.
Journal Article
11 (6), pp. 1587 - 1597 (2015)
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics 45.
Journal Article
1, 15025 (2015)
Endogenous Arabidopsis messenger RNAs transported to distant tissues. Nature Plants 46.
Journal Article
11 (2), e1004049 (2015)
The Roles of Post-translational Modifications in the Context of Protein Interaction Networks. PLoS Computational Biology 47.
Journal Article
1306, pp. 177 - 194 (2015)
Computational phosphorylation network reconstruction: methods and resources. Methods in Molecular Biology 48.
Journal Article
2, 51 (2015)
Physicochemical characteristics of structurally determined metabolite-protein and drug-protein binding events with respect to binding specificity. Frontiers in molecular biosciences 49.
Journal Article
15, 137 (2015)
Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge. BMC Plant Biology 50.
Journal Article
42 (7), pp. 655 - 667 (2015)
Assessment of drought tolerance and its potential yield penalty in potato. Functional Plant Biology