Publications of Patrick Giavalisco

Journal Article (91)

51.

Journal Article

Adhikari, E.; Lee, D. K.; Giavalisco, P.; Sieburth, L. E.: Long-Distance Signaling in bypass1 Mutants: Bioassay Development Reveals the bps Signal to Be a Metabolite. Molecular Plant 6 (1), pp. 164 - 173 (2013)

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52.

Journal Article

Antonio, C.; Mustafa, N. R.; Osorio, S.; Tohge, T.; Giavalisco, P.; Willmitzer, L.; Rischer, H.; Oksman-Caldentey, K. M.; Verpoorte, R.; Fernie, A. R.: Analysis of the interface between primary and secondary metabolism in Catharanthus roseus cell cultures using 13C-stable isotope feeding and coupled mass spectrometry. Molecular Plant 6 (2), pp. 581 - 584 (2013)

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53.

Journal Article

Bromke, M. A.; Giavalisco, P.; Willmitzer, L.; Hesse, H.: Metabolic Analysis of Adaptation to Short-Term Changes in Culture Conditions of the Marine Diatom Thalassiosira pseudonana. PLoS One 8 (6), p. e67340 (2013)

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54.

Journal Article

Caldana, C.; Li, Y.; Leisse, A.; Zhang, Y.; Bartholomaeus, L.; Fernie, A. R.; Willmitzer, L.; Giavalisco, P.: Systemic Analysis of Inducible Target of Rapamycin Mutants Reveal a General Metabolic Switch Controlling Growth in Arabidopsis thaliana. The Plant Journal 73 (6), pp. 897 - 909 (2013)

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55.

Journal Article

Gray, J. W.; Nelson Dittrich, A. C.; Chen, S.; Avila, J.; Giavalisco, P.; Devarenne, T. P.: Two Pdk1 phosphorylation sites on the plant cell death suppressor Adi3 contribute to substrate phosphorylation. Biochimica et Biophysica Acta 1834 (6), pp. 1099 - 1106 (2013)

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56.

Journal Article

Watanabe, M.; Balazadeh, S.; Tohge, T.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162 (3), pp. 1290 - 1310 (2013)

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57.

Journal Article

Zhang, Y.; Persson, S.; Giavalisco, P.: Differential Regulation of Carbon Partitioning by the Central Growth Regulator Target of Rapamycin (TOR). Molecular Plant 6 (6), pp. 1731 - 1733 (2013)

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58.

Journal Article

Degenkolbe, T.; Giavalisco, P.; Zuther, E.; Seiwert, B.; Hincha, D. K.; Willmitzer, L.: Differential remodeling of the lipidome during cold acclimation in natural accessions of Arabidopsis thaliana. The Plant Journal 72, pp. 972 - 982 (2012)

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59.

Journal Article

Lambers, H.; Cawthray, G. R.; Giavalisco, P.; Kuo, J.; Laliberte, E.; Pearse, S. J.; Scheible, W.-R.; Stitt, M.; Teste, F.; Turner, B. L.: Proteaceae from severely phosphorus-impoverished soils extensively replace phospholipids with galactolipids and sulfolipids during leaf development to achieve a high photosynthetic phosphorus-use-efficiency. New Phytologist 196 (4), pp. 1098 - 1108 (2012)

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60.

Journal Article

Burgos, A.; Szymanski, J.; Seiwert, B.; Degenkolbe, T.; Hannah, M. A.; Giavalisco, P.; Willmitzer, L.: Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light. The Plant Journal 66 (4), pp. 656 - 668 (2011)

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61.

Journal Article

Csukasi, F.; Osorio, S.; Gutierrez, J. R.; Kitamura, J.; Giavalisco, P.; Nakajima, M.; Fernie, A. R.; Rathjen, J. P.; Botella, M. A.; Valpuesta, V. et al.; Medina-Escobar, N.: Gibberellin biosynthesis and signalling during development of the strawberry receptacle. New Phytologist 191 (2), pp. 376 - 390 (2011)

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62.

Journal Article

Fu, X.; Giavalisco, P.; Liu, X. L.; Catchpole, G.; Fu, N.; Ning, Z. B.; Guo, S.; Yan, Z.; Somel, M.; Paabo, S. et al.; Zeng, R.; Willmitzer, L.; Khaitovich, P.: Rapid metabolic evolution in human prefrontal cortex. Proceedings of the National Academy of Sciences of the United States of America 108 (15), pp. 6181 - 6186 (2011)

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63.

Journal Article

Giavalisco, P.; Li, Y.; Matthes, A.; Eckhardt, A.; Hubberten, H.-M.; Hesse, H.; Segu, S.; Hummel, J.; Koehl, K. I.; Willmitzer, L.: Elemental formula annotation of polar and lipophilic metabolites using 13C, 15N and 34S isotope labelling, in combination with high-resolution mass spectrometry. The Plant Journal 68 (2), pp. 364 - 376 (2011)

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64.

Journal Article

Huege, J.; Krall, L.; Steinhauser, M.-C.; Giavalisco, P.; Rippka, R.; de Marsac, N. T.; Steinhauser, D.: Sample amount alternatives for data adjustment in comparative cyanobacterial metabolomics. Analytical and Bioanalytical Chemistry 399 (10), pp. 3503 - 3517 (2011)

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65.

Journal Article

Hummel, J.; Segu, S.; Li, Y.; Irgang, S.; Jueppner, J.; Giavalisco, P.: Ultra performance liquid chromatography and high resolution mass spectrometry for the analysis of plant lipids. Frontiers in Plant Science 2, p. 54 (2011)

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66.

Journal Article

Klie, S.; Krueger, S.; Krall, L.; Giavalisco, P.; Fluegge, U.-I.; Willmitzer, L.; Steinhauser, D.: Analysis of the compartmentalized metabolome – a validation of the non-aqueous fractionation technique. Frontiers in Plant Science 2, p. 55 (2011)

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67.

Journal Article

Krueger, S.; Giavalisco, P.; Krall, L.; Steinhauser, M.-C.; Buessis, D.; Usadel, B.; Fluegge, U.-I.; Fernie, A. R.; Willmitzer, L.; Steinhauser, D.: A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome. PLoS One 6 (3), p. e17806 (2011)

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68.

Journal Article

Lisec, J.; Romisch-Margl, L.; Nikoloski, Z.; Piepho, H. P.; Giavalisco, P.; Selbig, J.; Gierl, A.; Willmitzer, L.: Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns. The Plant Journal 68 (2), pp. 326 - 336 (2011)

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69.

Journal Article

Osorio, S.; Bombarely, A.; Giavalisco, P.; Usadel, B.; Stephens, C.; Araguez, I.; Medina-Escobar, N.; Botella, M. A.; Fernie, A. R.; Valpuesta, V.: Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit. Journal of Experimental Botany 62 (8), pp. 2855 - 2873 (2011)

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70.

Journal Article

Tohge, T.; Ramos, M. S.; Nunes-Nesi, A.; Mutwil, M.; Giavalisco, P.; Steinhauser, D.; Schellenberg, M.; Willmitzer, L.; Persson, S.; Martinoia, E. et al.; Fernie, A. R.: Toward the storage metabolome: profiling the barley vacuole. Plant Physiology 157 (3), pp. 1469 - 1482 (2011)

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71.

Journal Article

Cuadros-Inostroza, A.; Giavalisco, P.; Hummel, J.; Eckardt, A.; Willmitzer, L.; Pena-Cortes, H.: Discrimination of Wine Attributes by Metabolome Analysis. Analytical Chemistry 82 (9), pp. 3573 - 3580 (2010)

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72.

Journal Article

Scherling, C.; Roscher, C.; Giavalisco, P.; Schulze, E.-D.; Weckwerth, W.: Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species. PLoS One 5 (9), p. e12569 (2010)

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73.

Journal Article

Vogel, J. T.; Walter, M. H.; Giavalisco, P.; Lytovchenko, A.; Kohlen, W.; Charnikhova, T.; Simkin, A. J.; Goulet, C.; Strack, D.; Bouwmeester, H. J. et al.; Fernie, A. R.; Klee, H. J.: SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato. The Plant Journal 61 (2), pp. 300 - 311 (2010)

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74.

Journal Article

Zbierzak, A. M.; Kanwischer, M.; Wille, C.; Vidi, P. A.; Giavalisco, P.; Lohmann, A.; Briesen, I.; Porfirova, S.; Brehelin, C.; Kessler, F. et al.; Doermann, P.: Intersection of the tocopherol and plastoquinol metabolic pathways at the plastoglobule. Biochemical Journal 425 (2), pp. 389 - 399 (2010)

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75.

Journal Article

Giavalisco, P.; Koehl, K. I.; Hummel, J.; Seiwert, B.; Willmitzer, L.: 13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research. Analytical Chemistry 81 (15), pp. 6546 - 6551 (2009)

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76.

Journal Article

Nebrich, G.; Herrmann, M.; Hartl, D.; Diedrich, M.; Kreitler, T.; Wierling, C.; Klose, J.; Giavalisco, P.; Zabel, C.; Mao, L.: PROTEOMER: A workflow-optimized laboratory information management system for 2-D electrophoresis-centered proteomics. Proteomics 9 (7), pp. 1795 - 1808 (2009)

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77.

Journal Article

Zanor, M. I.; Osorio, S.; Nunes-Nesi, A.; Carrari, F.; Lohse, M.; Usadel, B.; Kuehn, C.; Bleiss, W.; Giavalisco, P.; Willmitzer, L. et al.; Sulpice, R.; Zhou, Y. H.; Fernie, A. R.: RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility. Plant Physiology 150 (3), pp. 1204 - 1218 (2009)

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78.

Journal Article

Giavalisco, P.; Hummel, J.; Lisec, J.; Inostroza, A. C.; Catchpole, G.; Willmitzer, L.: High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole C-13 Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas. Analytical Chemistry 80 (24), pp. 9417 - 9425 (2008)

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79.

Journal Article

Nebrich, G.; Herrmann, M.; Sagi, D.; Klose, J.; Giavalisco, P.: High MS-compatibility of silver nitrate-stained protein spots from 2-DE gels using ZipPlates and AnchorChips for successful protein identification. Electrophoresis 28 (10), pp. 1607 - 1614 (2007)

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80.

Journal Article

Xiao, F.; Giavalisco, P.; Martin, G. B.: Pseudomonas syringae type III effector AvrPtoB is phosphorylated in plant cells on serine 258, promoting its virulence activity. Journal of Biological Chemistry 282 (42), pp. 30737 - 30744 (2007)

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81.

Journal Article

Giavalisco, P.; Kapitza, K.; Kolasa, A.; Buhtz, A.; Kehr, J.: Towards the proteome of Brassica napus phloem sap. Proteomics 6 (3), pp. 896 - 909 (2006)

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82.

Journal Article

Giavalisco, P.; Nordhoff, E.; Kreitler, T.; Kloppel, K. D.; Lehrach, H.; Klose, J.; Gobom, J.: Proteome analysis of Arabidopsis thaliana by two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionisation-time of flight mass spectrometry. Proteomics 5 (7), pp. 1902 - 1913 (2005)

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83.

Journal Article

Giavalisco, P.; Wilson, D.; Kreitler, T.; Lehrach, H.; Klose, J.; Gobom, J.; Fucini, P.: High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Plant Molecular Biology 57 (4), pp. 577 - 591 (2005)

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84.

Journal Article

Kehr, J.; Buhtz, A.; Giavalisco, P.: Analysis of xylem sap proteins from Brassica napus. BMC Plant Biology 5, p. 11 (2005)

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85.

Journal Article

Schad, M.; Lipton, M. S.; Giavalisco, P.; Smith, R. D.; Kehr, J.: Evaluation of two-dimensional electrophoresis and liquid chromatography tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples. Electrophoresis 26 (14), pp. 2729 - 2738 (2005)

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86.

Journal Article

Wolski, W. E.; Lalowski, M.; Martus, P.; Herwig, R.; Giavalisco, P.; Gobom, J.; Sickmann, A.; Lehrach, H.; Reinert, K.: Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. BMC Bioinformatics 6, p. 285 (2005)

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87.

Journal Article

Kersten, B.; Feilner, T.; Angenendt, P.; Giavalisco, P.; Brenner, W.; Buerkle, L.: Proteomic Approaches in Plant Biology. Current Proteomics 1 (2), pp. 131 - 144 (2004)

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88.

Journal Article

Walz, C.; Giavalisco, P.; Schad, M.; Juenger, M.; Klose, J.; Kehr, J.: Proteomics of curcurbit phloem exudate reveals a network of defence proteins. Phytochemistry 65 (12), pp. 1795 - 1804 (2004)

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89.

Journal Article

Egelhofer, V.; Gobom, J.; Seitz, H.; Giavalisco, P.; Lehrach, H.; Nordhoff, E.: Protein identification by MALDI-TOF-MS peptide mapping: a new strategy. Analytical Chemistry 74 (8), pp. 1760 - 1771 (2002)

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90.

Journal Article

Enard, W.; Khaitovich, P.; Klose, J.; Zoellner, S.; Heissig, F.; Giavalisco, P.; Nieselt-Struwe, K.; Muchmore, E.; Varki, A.; Ravid, R. et al.; Doxiadis, G. M.; Bontrop, R. E.; Paabo, S.: Intra- and interspecific variation in primate gene expression patterns. Science 296 (5566), pp. 340 - 343 (2002)

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91.

Journal Article

Nordhoff, E.; Egelhofer, V.; Giavalisco, P.; Eickhoff, H.; Horn, M.; Przewieslik, T.; Theiss, D.; Schneider, U.; Lehrach, H.; Gobom, J.: Large-gel two-dimensional electrophoresis-matrix assisted laser desorption/ionization-time of flight-mass spectrometry: an analytical challenge for studying complex protein mixtures. Electrophoresis 22 (14), pp. 2844 - 2855 (2001)

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Book Chapter (5)

92.

Book Chapter

Salem, M.A.; Giavalisco, P.: Semi-targeted Lipidomics of Plant Acyl Lipids Using UPLC-HR-MS in Combination with a Data-Independent Acquisition Mode. In: Methods in Molecular Biology, Vol. 1778, pp. 137 - 156 (Ed. Walker, J. M.). Humana Press, Clifton, N.J. (2018)

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93.

Book Chapter

Watanabe, M.; Tohge, T.; Balazadeh, S.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive Metabolomics Studies of Plant Developmental Senescence. In: Plant Senescence: Methods and Protocols, pp. 339 - 358 (Ed. Guo, Y.). Springer New York, New York, NY (2018)

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94.

Book Chapter

Krueger, S.; Steinhauser, D.; Lisec, J.; Giavalisco, P.: Analysis of Subcellular Metabolite Distributions Within Arabidopsis thaliana Leaf Tissue: A Primer for Subcellular Metabolomics. In: Arabidopsis Protocols, 3rd Edition, pp. 575 - 596. Humana Press, Totowa, NJ (2014)

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95.

Book Chapter

Seiwert, B.; Giavalisco, P.; Willmitzer, L.: Advanced Mass Spectrometry Methods for Analysis of Lipids from Photosynthetic Organisms. In: Lipids in Photosynthesis: Essential and Regulatory Functions, 20, pp. 445 - 462 (Eds. Wada, H.; Murata, N.). Springer-Verlag, Dordrecht, NED (2010)

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96.

Book Chapter

Buerkle, L.; Feilner, T.; Brenner, W.; Giavalisco, P.; Lehrach, H.; Kersten, B.: Genomic and proteomic approaches in plant research (review). In: Recent Research Developments in Plant Molecular Biology (Ed. Pandalai, S.G.). Research Signpost, Singapore (2003)

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Conference Paper (2)

97.

Conference Paper

Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Vol. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, September 26, 2007 - September 28, 2007. (2007)

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98.

Conference Paper

Giavalisco, P.; Nordhoff, E.; Lehrach, H.; Gobom, J.; Klose, J.: Extraction of proteins from plant tissues for two-dimensional electrophoresis analysis. In: 16th International Symposium on Microscale Separation and Analysis, pp. 207 - 216. 16th International Symposium on Microscale Separation and Analysis, SAN DIEGO, CALIFORNIA. (2003)

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Thesis (1)

99.

Thesis

Giavalisco, P.: Proteomanalyse von Pflanzen. 148 pp., Department of Biology, Chenistry and Pharmacology., Free University, Berlin (2003)

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Film (2)

100.

Film

Mubeen, U.; Giraldi, L.A.; Jueppner, J.; Giavalisco, P.: A Multi-Omics Extraction Method for the In-Depth Analysis of Synchronized Cultures of the Green Alga Chlamydomonas reinhardtii. (2019)

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