Complete publication list

Publications of Patrick Giavalisco

Journal Article (80)

  1. 1.
    Alhajturki, D.; Muralidharan, S.; Nurmi, M.; Rowan, B. A.; Lunn, J. E.; Boldt, H.; Salem, M.A.; Alseekh, S.; Jorzig, C.; Feil, R. et al.; Giavalisco, P.; Fernie, A. R.; Weigel, D.; Laitinen, R.: Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana. New Phytologist 217 (1), pp. 392 - 406 (2018)
  2. 2.
    Farag, M. A.; Meyer, A.; Ali, S. E.; Salem, M.A.; Giavalisco, P.; Westphal, H.; Wessjohann, L. A.: Comparative Metabolomics Approach Detects Stress-Specific Responses during Coral Bleaching in Soft Corals. Journal of Proteome Research 17 (6), pp. 2060 - 2071 (2018)
  3. 3.
    Jueppner, J.; Mubeen, U.; Leisse, A.; Caldana, C.; Wiszniewski, A.A.G.; Steinhauser, D.; Giavalisco, P.: The target of rapamycin kinase affects biomass accumulation and cell cycle progression by altering carbon/nitrogen balance in synchronized Chlamydomonas reinhardtii cells. The Plant Journal 93 (2), pp. 355 - 376 (2018)
  4. 4.
    Khrameeva, E.; Kurochkin, I.; Bozek, K.; Giavalisco, P.; Khaitovich, P.: Lipidome Evolution in Mammalian Tissues. Molecular Biology and Evolution 35 (8), pp. 1947 - 1957 (2018)
  5. 5.
    Klein, O.; Strohschein, K.; Nebrich, G.; Fuchs, M.; Thiele, H.; Giavalisco, P.; Duda, G. N.; Winkler, T.; Kobarg, J. H.; Trede, D. et al.; Geissler, S.: Unraveling local tissue changes within severely injured skeletal muscles in response to MSC-based intervention using MALDI Imaging mass spectrometry. Scientific Reports 8 (1), 12677 (2018)
  6. 6.
    Salem, M.A.; Li, Y.; Bajdzienko, K.; Fisahn, J.; Watanabe, M.; Hoefgen, R.; Schöttler, M. A.; Giavalisco, P.: RAPTOR controls developmental growth transitions by altering the hormonal and metabolic balance. Plant Physiology 177 (2), pp. 565 - 593 (2018)
  7. 7.
    Barbash, S.; Garfinkel, B. P.; Maoz, R.; Simchovitz, A.; Nadorp, B.; Guffanti, A.; Bennett, E. R.; Nadeau, C.; Tuerk, A.; Paul, L. et al.; Reda, T.; Li, Y.; Buchman, A. S.; Greenberg, D. S.; Seitz, A.; Bennett, D. A.; Giavalisco, P.; Soreq, H.: Alzheimer's brains show inter-related changes in RNA and lipid metabolism. Neurobiology of Disease 106, pp. 1 - 13 (2017)
  8. 8.
    Bozek, K.; Khrameeva, E. E.; Reznick, J.; Omerbašić, D.; Bennett, N. C.; Lewin, G. R.; Azpurua, J.; Gorbunova, V.; Seluanov, A.; Regnard, P. et al.; Wanert, F.; Marchal, J.; Pifferi, F.; Aujard, F.; Liu, Z.; Shi, P.; Pääbo, S.; Schröder, F.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Lipidome determinants of maximal lifespan in mammals. Scientific Reports (2017)
  9. 9.
    Hanhart, P.; Thiess, M.; Amari, K.; Bajdzienko, K.; Giavalisco, P.; Heinlein, M.; Kehr, J.: Bioinformatic and expression analysis of the Brassica napus L. cyclophilins. Scientific Reports 7, 1514 (2017)
  10. 10.
    Jueppner, J.; Mubeen, U.; Leisse, A.; Caldana, C.; Brus, H.; Steup, M.; Herrmann, M.; Steinhauser, D.; Giavalisco, P.: Dynamics of lipids and metabolites during the cell cycle of Chlamydomonas reinhardtii. The Plant Journal 92 (2), pp. 331 - 343 (2017)
  11. 11.
    Li, Q.; Bozek, K.; Xu, C.; Guo, Y.; Sun, J.; Pääbo, S.; Sherwood, C. C.; Hof, P. R.; Ely, J. J.; Li, Y. et al.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Changes in lipidome composition during brain development in humans, chimpanzees, and macaque monkeys. Molecular Biology and Evolution 34 (5), pp. 1155 - 1166 (2017)
  12. 12.
    Salem, M.A.; Bernach, M.; Bajdzienko, K.; Giavalisco, P.: A simple fractionated extraction method for the comprehensive analysis of metabolites, lipids, and proteins from a single sample. Journal of Visualized Experiments 217 (124), e55802 (2017)
  13. 13.
    Salem, M.A.; Li, Y.; Wiszniewski, A.A.G.; Giavalisco, P.: Regulatory-associated protein of TOR (RAPTOR) alters the hormonal and metabolic composition of Arabidopsis seeds, controlling seed morphology, viability and germination potential. The Plant Journal 92 (4), pp. 525 - 545 (2017)
  14. 14.
    Swiadek, M.; Proost, S.; Sieh, D.; Yu, J.; Todesco, M.; Jorzig, C.; Cubillos, A.; Plötner, B.; Nikoloski, Z.; Chae, E. et al.; Giavalisco, P.; Fischer, A.; Schröder, F.; Kim, S.-T.; Weigel, D.; Laitinen, R.: Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213 (2), pp. 900 - 915 (2017)
  15. 15.
    Liu, Z.; Omranian, N.; Neumetzler, L.; Wang, T.; Herter, T.; Usadel, B.; Demura, T.; Giavalisco, P.; Nikoloski, Z.; Persson, S.: A transcriptional and metabolic framework for secondary wall formation in arabidopsis. Plant Physiology 172 (2), pp. 1334 - 1351 (2016)
  16. 16.
    Ostendorp, A.; Pahlow, S.; Krüßel, L.; Hanhart, P.; Garbe, M. Y.; Deke, J.; Giavalisco, P.; Kehr, J.: Functional analysis of Brassica napus phloem protein and ribonucleoprotein complexes. New Phytologist (2016)
  17. 17.
    Salem, M.A.; Jueppner, J.; Bajdzienko, K.; Giavalisco, P.: Protocol: A fast, comprehensive and reproducible one-step extraction method for the rapid preparation of polar and semi-polar metabolites, lipids, proteins, starch and cell wall polymers from a single sample. Plant Methods 12 (1), 45 (2016)
  18. 18.
    Sharma, D. K.; Gautam, K.; Jueppner, J.; Giavalisco, P.; Rihko-Struckmann, L.; Pareek, A.; Sundmacher, K.: UPLC-MS analysis of Chlamydomonas reinhardtii and Scenedesmus obliquus lipid extracts and their possible metabolic roles. Journal of applied phycology 27 (3), pp. 1149 - 1159 (2015)
  19. 19.
    Kleessen, S.; Irgang, S.; Klie, S.; Giavalisco, P.; Nikoloski, Z.: Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment. The Plant Journal 81 (5), pp. 822 - 835 (2015)
  20. 20.
    Alseekh, S.; Tohge, T.; Wendenburg, R.; Scossa, F.; Omranian, N.; Li, J.; Kleessen, S.; Giavalisco, P.; Pleban, T.; Mueller-Roeber, B. et al.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Identification and mode of inheritance of quantitative trait Loci for secondary metabolite abundance in tomato. The Plant Cell 27 (3), pp. 485 - 512 (2015)
  21. 21.
    Avin-Wittenberg, T.; Bajdzienko, K.; Wittenberg, G.; Alseekh, S.; Tohge, T.; Bock, R.; Giavalisco, P.; Fernie, A. R.: Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation. The Plant Cell 27 (2), pp. 306 - 322 (2015)
  22. 22.
    Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Sherwood, C. C.; Hof, P. R. et al.; Ely, J. J.; Li, Y.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues. Neuron 85 (4), pp. 695 - 702 (2015)
  23. 23.
    Bromke, M. A.; Hochmuth, A.; Tohge, T.; Fernie, A. R.; Giavalisco, P.; Burgos, A.; Willmitzer, L.; Brotman, Y.: Liquid chromatography high-resolution mass spectrometry for fatty acid profiling. The Plant Journal 81 (3), pp. 529 - 536 (2015)
  24. 24.
    Li, N.; Gügel, I. L.; Giavalisco, P.; Zeisler, V.; Schreiber, L.; Soll, J.; Philippar, K.: FAX1, a Novel Membrane Protein Mediating Plastid Fatty Acid Export. PLoS Biology 13 (2), e1002053 (2015)
  25. 25.
    Sharma, D. K.; Gautam, K.; Jueppner, J.; Giavalisco, P.; Rihko-Struckmann, L.; Pareek, A.; Sundmacher, K.: UPLC-MS analysis of Chlamydomonas reinhardtii and Scenedesmus obliquus lipid extracts and their possible metabolic roles. Journal of Applied Phycology 27 (3), pp. 1149 - 1159 (2015)
  26. 26.
    Vallarino, J. G.; Osorio, S.; Bombarely, A.; Casanal, A.; Cruz-Rus, E.; Sanchez-Sevilla, J. F.; Amaya, I.; Giavalisco, P.; Fernie, A. R.; Botella, M. A. et al.; Valpuesta, V.: Central role of FaGAMYB in the transition of the strawberry receptacle from development to ripening. The New phytologist 208 (2), pp. 482 - 496 (2015)
  27. 27.
    Hauck, O. K.; Scharnberg, J.; Escobar, N. M.; Wanner, G.; Giavalisco, P.; Witte, C.-P.: Uric Acid Accumulation in an Arabidopsis Urate Oxidase Mutant Impairs Seedling Establishment by Blocking Peroxisome Maintenance. Plant Cell 26 (7), pp. 3090 - 3100 (2014)
  28. 28.
    Khrameeva, E. E.; Bozek, K.; He, L.; Yan, Z.; Jiang, X.; Wei, Y.; Tang, K.; Gelfand, M. S.; Prüfer, K.; Kelso, J. F. et al.; Pääbo, S.; Giavalisco, P.; Lachmann, M.; Khaitovich, P.: Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans. Nature Communications (2014)
  29. 29.
    Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Pieszek, R.; Sherwood, C. C. et al.; Hof, P. R.; Ely, J. J.; Steinhauser, D.; Willmitzer, L.; Bangsbo, J.; Hansson, O.; Call, J.; Giavalisco, P.; Khaitovich, P.: Exceptional Evolutionary Divergence of Human Muscle and Brain Metabolomes Parallels Human Cognitive and Physical Uniqueness. PLoS Biology 12 (5), e1001871 (2014)
  30. 30.
    Delgado, R.; Munoz, Y.; Pena-Cortes, H.; Giavalisco, P.; Bacigalupo, J.: Diacylglycerol Activates the Light-Dependent Channel TRP in the Photosensitive Microvilli of Drosophila melanogaster Photoreceptors. The Journal of Neuroscience 34 (19), pp. 6679 - 6686 (2014)
  31. 31.
    Klein, O.; Strohschein, K.; Nebrich, G.; Oetjen, J.; Trede, D.; Thiele, H.; Alexandrov, T.; Giavalisco, P.; Duda, G. N.; von Roth, P. et al.; Geissler, S.; Klose, J.; Winkler, T.: MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures. Proteomics 14 (20), pp. 2249 - 2260 (2014)
  32. 32.
    Kuppusamy, T.; Giavalisco, P.; Arvidsson, S.; Sulpice, R.; Stitt, M.; Finnegan, P. M.; Scheible, W.-R.; Lambers, H.; Jost, R.: Lipid Biosynthesis and Protein Concentration Respond Uniquely to Phosphate Supply during Leaf Development in Highly Phosphorus-Efficient Hakea prostrata. Plant Physiology 166 (4), pp. 1891 - 911 (2014)
  33. 33.
    Schroeder, F.; Lisso, J.; Obata, T.; Erban, A.; Maximova, E.; Giavalisco, P.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Muessig, C.: Consequences of induced brassinosteroid deficiency in Arabidopsis leaves. BMC Plant Biology 14, 309 (2014)
  34. 34.
    Wulff-Zottele, C.; Hesse, H.; Fisahn, J.; Bromke, M. A.; Vera-Villalobos, H.; Li, Y.; Frenzel, F.; Giavalisco, P.; Ribera-Fonseca, A.; Zunino, L. et al.; Caruso, I.; Stohmann, E.; de la Luz Mora, M.: Sulphate fertilization ameliorates long-term aluminum toxicity symptoms in perennial ryegrass (Lolium perenne). Plant Physiology and Biochemistry 83, pp. 88 - 99 (2014)
  35. 35.
    Yadav, U. P.; Yadav, U. P.; Ivakov, A.; Feil, R.; Duan, G. Y.; Walther, D.; Giavalisco, P.; Piques, M.; Carillo , P.; Hubberten, H. M. et al.; Stitt, M.; Lunn, J. E.: The sucrose–trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P. Journal of Experimental Botany (2014)
  36. 36.
    Sulpice, R.; Ishihara, H.; Schlereth, A.; Cawthray, G. R.; Encke, B.; Giavalisco, P.; Ivakov, A.; Arrivault, S.; Jost, R.; Krohn, N. et al.; Kuo, J.; Laliberte, E.; Pearse, S. J.; Raven, J. A.; Scheible, W.-R.; Teste, F.; Veneklaas, E. J.; Stitt, M.; Lambers, H.: Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant, Cell and Environment (2013)
  37. 37.
    Trost, G.; Vi, S. L.; Czesnick, H.; Lange, P.; Holton, N.; Giavalisco, P.; Zipfel, C.; Kappel, C.; Lenhard, M.: Arabidopsis poly(A) polymerase PAPS1 limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4. The Plant Journal (2013)
  38. 38.
    Adhikari, E.; Lee, D. K.; Giavalisco, P.; Sieburth, L. E.: Long-Distance Signaling in bypass1 Mutants: Bioassay Development Reveals the bps Signal to Be a Metabolite. Molecular Plant 6 (1), pp. 164 - 173 (2013)
  39. 39.
    Antonio, C.; Mustafa, N. R.; Osorio, S.; Tohge, T.; Giavalisco, P.; Willmitzer, L.; Rischer, H.; Oksman-Caldentey, K. M.; Verpoorte, R.; Fernie, A. R.: Analysis of the interface between primary and secondary metabolism in Catharanthus roseus cell cultures using 13C-stable isotope feeding and coupled mass spectrometry. Molecular Plant 6 (2), pp. 581 - 584 (2013)
  40. 40.
    Bromke, M. A.; Giavalisco, P.; Willmitzer, L.; Hesse, H.: Metabolic Analysis of Adaptation to Short-Term Changes in Culture Conditions of the Marine Diatom Thalassiosira pseudonana. PLoS One (2013)
  41. 41.
    Caldana, C.; Li, Y.; Leisse, A.; Zhang, Y.; Bartholomaeus, L.; Fernie, A. R.; Willmitzer, L.; Giavalisco, P.: Systemic Analysis of Inducible Target of Rapamycin Mutants Reveal a General Metabolic Switch Controlling Growth in Arabidopsis thaliana. The Plant Journal 73 (6), pp. 897 - 909 (2013)
  42. 42.
    Gray, J. W.; Nelson Dittrich, A. C.; Chen, S.; Avila, J.; Giavalisco, P.; Devarenne, T. P.: Two Pdk1 phosphorylation sites on the plant cell death suppressor Adi3 contribute to substrate phosphorylation. Biochimica et Biophysica Acta 1834 (6), pp. 1099 - 1106 (2013)
  43. 43.
    Watanabe, M.; Balazadeh, S.; Tohge, T.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162 (3), pp. 1290 - 1310 (2013)
  44. 44.
    Zhang, Y.; Persson, S.; Giavalisco, P.: Differential Regulation of Carbon Partitioning by the Central Growth Regulator Target of Rapamycin (TOR). Molecular Plant (2013)
  45. 45.
    Degenkolbe, T.; Giavalisco, P.; Zuther, E.; Seiwert, B.; Hincha, D. K.; Willmitzer, L.: Differential remodeling of the lipidome during cold acclimation in natural accessions of Arabidopsis thaliana. The Plant Journal 72, pp. 972 - 982 (2012)
  46. 46.
    Kueger, S.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P.: High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions. The Plant Journal 70 (1), pp. 39 - 50 (2012)
  47. 47.
    Lambers, H.; Cawthray, G. R.; Giavalisco, P.; Kuo, J.; Laliberte, E.; Pearse, S. J.; Scheible, W.-R.; Stitt, M.; Teste, F.; Turner, B. L.: Proteaceae from severely phosphorus-impoverished soils extensively replace phospholipids with galactolipids and sulfolipids during leaf development to achieve a high photosynthetic phosphorus-use-efficiency. New Phytologist 196 (4), pp. 1098 - 1108 (2012)
  48. 48.
    Burgos, A.; Szymanski, J.; Seiwert, B.; Degenkolbe, T.; Hannah, M. A.; Giavalisco, P.; Willmitzer, L.: Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light. The Plant Journal 66 (4), pp. 656 - 668 (2011)
  49. 49.
    Csukasi, F.; Osorio, S.; Gutierrez, J. R.; Kitamura, J.; Giavalisco, P.; Nakajima, M.; Fernie, A. R.; Rathjen, J. P.; Botella, M. A.; Valpuesta, V. et al.; Medina-Escobar, N.: Gibberellin biosynthesis and signalling during development of the strawberry receptacle. New Phytologist 191 (2), pp. 376 - 390 (2011)
  50. 50.
    Fu, X.; Giavalisco, P.; Liu, X. L.; Catchpole, G.; Fu, N.; Ning, Z. B.; Guo, S.; Yan, Z.; Somel, M.; Paabo, S. et al.; Zeng, R.; Willmitzer, L.; Khaitovich, P.: Rapid metabolic evolution in human prefrontal cortex. Proceedings of the National Academy of Sciences of the United States of America 108 (15), pp. 6181 - 6186 (2011)
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