Journal Article (1023)

101.
Journal Article
Aghajanzadeh, T.A.; Watanabe, M.; Tohge, T.; Hawkesford, M.J.; Fernie, A. R.; Hoefgen, R.; Elzenga, J.T.M.; De Kok, L.J.: Necrotrophic fungal infection affects indolic glucosinolate metabolism in Brassica rapa. Acta Physiologiae Plantarum 45 (5), 64 (2023)
102.
Journal Article
Aharoni, A.; Goodacre, R.; Fernie, A. R.: Plant and microbial sciences as key drivers in the development of metabolomics research. Proceedings of the National Academy of Sciences of the United States of America 120 (12), e2217383120 (2023)
103.
Journal Article
Chen, J.; Zhang, Y.; Yin, H.; Liu, W.; Hu, X.; Li, D.; Lan, C.; Gao, L.; He, Z.; Cui, F. et al.; Fernie, A. R.; Chen, W.: The pathway of melatonin biosynthesis in common wheat (Triticum aestivum). Journal of Pineal Research 74 (2), e12841 (2023)
104.
Journal Article
Guo, H.; Cao, P.; Wang, C.; Lai, J.; Deng, Y.; Li, C.; Hao, Y.; Wu, Z.; Chen, R.; Qiang, Q. et al.; Fernie, A. R.; Yang, J.; Wang, S.: Population analysis reveals the roles of DNA methylation in tomato domestication and metabolic diversity. Science China Life Sciences 66, pp. 1888 - 1902 (2023)
105.
Journal Article
Sheng, O.; Yin, Z.; Huang, W.; Chen, M.; Du, M.; Kong, Q.; Fernie, A. R.; Yi, G.; Yan, S.: Metabolic profiling reveals genotype-associated alterations in carotenoid content during banana postharvest ripening. Food Chemistry 403, 134380 (2023)
106.
Journal Article
Shi, Y.; Zhang, Y.; Sun, Y.; Xie, Z.; Luo, Y.; Long, Q.; Feng, J.; Liu, X.; Wang, B.; He, D. et al.; Ren, J.; Guo, P.; Xing, J.; He, L.; Fernie, A. R.; Chen, W.; Liu, X.; Luo, Y.; Jin, C.; Luo, J.: Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains. Molecular Plant 16 (2), pp. 322 - 336 (2023)
107.
Journal Article
Cerqueira, J. V. A.; Zhu, F.; Mendes, K.; Nunes-Nesi, A.; Martins, S. C. V.; Benedito, V.; Fernie, A. R.; Zsögön, A.: Promoter replacement of ANTHOCYANIN1 induces anthocyanin accumulation and triggers shade avoidance response through developmental, physiological and metabolic reprogramming in tomato. Horticulture Research 10 (2), uhac254 (2023)
108.
Journal Article
Chen, Y.; Chao, Z.-F.; Jin, M.; Wang, Y.-L.; Li, Y.; Wu, J.-C.; Xiao, Y.; Peng, Y.; Lv, Q.-Y.; Gui, S. et al.; Wang, X.; Han, M.-L.; Fernie, A. R.; Chao, D.-Y.; Yan, J.: A heavy metal transporter gene ZmHMA3a promises safe agricultural production on cadmium-polluted arable land. Journal of Genetics and Genomics 50 (2), p. 130-134 (2023)
109.
Journal Article
Gui, S.; Martinez Rivas, F.J.; Wen, W.; Meng, M.; Yan, J.; Usadel, B.; Fernie, A. R.: Going broad and deep: sequencing driven insights into plant physiology, evolution and crop domestication. The Plant Journal 113 (3), pp. 446 - 459 (2023)
110.
Journal Article
Hu, X.; Fernie, A. R.; Yan, J.: Deep learning in regulatory genomics: from identification to design. Current Opinion in Biotechnology 79, 102887 (2023)
111.
Journal Article
Li, H.; Fernie, A. R.; Yang, X.: Using systems metabolic engineering strategies for high-oil maize breeding. Current Opinion in Biotechnology 79, 102847 (2023)
112.
Journal Article
Liu, Y.; Nour-Eldin, H.H.; Zhang, L.; Li, Z.; Fernie, A. R.; Ren, M.: Biotechnological detoxification: an unchanging source–sink balance strategy for crop improvement. Trends in Plant Science 28 (2), pp. 135 - 138 (2023)
113.
Journal Article
Yin, Z.; Huang, W.; Fernie, A. R.; Yan, S.: Mass spectrometry imaging techniques: a versatile toolbox for plant metabolomics. Trends in Plant Science 28 (2), pp. 250 - 251 (2023)
114.
Journal Article
Bellucci, E.; Benazzo, A.; Xu, C.; Bitocchi, E.; Rodriguez, M.; Alseekh, S.; Di Vittori, V.; Gioia, T.; Neumann, K.; Cortinovis, G. et al.; Frascarelli, G.; Murube, E.; Trucchi, E.; Nanni, L.; Ariani, A.; Logozzo, G.; Shin, J. H.; Liu, C.; Jiang, L.; Ferreira, J. J.; Campa, A.; Attene, G.; Morrell, P. L.; Bertorelle, G.; Graner, A.; Gepts, P.; Fernie, A. R.; Jackson, S. A.; Papa, R.: Selection and adaptive introgression guided the complex evolutionary history of the European common bean. Nature Communications 14, 1908 (2023)
115.
Journal Article
Fernie, A. R.; Skirycz, A.: Plant metabolism: A protein map of the photosynthetic organelle. Current Biology 33 (21), pp. R1147 - R1150 (2023)
116.
Journal Article
Hunt, H.; Brueggen, N.; Galle, A.; Vanderauwera, S.; Frohberg, C.; Fernie, A. R.; Sonnewald, U.; Sweetlove, L.: Analysis of companion cell and phloem metabolism using a transcriptome-guided model of Arabidopsis metabolism. Plant Physiology 192 (2), pp. 1359 - 1377 (2023)
117.
Journal Article
Lima, L.G.A.D.; Ferreira, S.S.; Simões, M.S.; Cunha, L.X.D.; Fernie, A. R.; Cesarino, I.: Comprehensive expression analyses of the ABCG subfamily reveal SvABCG17 as a potential transporter of lignin monomers in the model C4 grass Setaria viridis. Journal of Plant Physiology 280, 153900 (2023)
118.
Journal Article
Natale, R.; Coppola, M.; D'Agostino, N.; Zhang, Y.; Fernie, A. R.; Castaldi, V.; Rao, R.: In silico and in vitro approaches allow the identification of the Prosystemin molecular network. Computational and Structural Biotechnology Journal 21, pp. 212 - 223 (2023)
119.
Journal Article
Poplawski, P.; Alseekh, S.; Jankowska, U.; Skupien-Rabian, B.; Iwanicka-Nowicka, R.; Kossowska, H.; Fogtman, A.; Rybicka, B.; Bogusławska, J.; Adamiok-Ostrowska, A. et al.; Hanusek, K.; Hanusek, J.; Koblowska, M.; Fernie, A. R.; Piekiełko-Witkowska, A.: Coordinated reprogramming of renal cancer transcriptome, metabolome and secretome associates with immune tumor infiltration. Cancer Cell International 23 (1), 2 (2023)
120.
Journal Article
Salem, M.; El-Shiekh, R.; Aborehab, N.; Al-Karmalawy, A.; Ezzat, S.; Alseekh, S.; Fernie, A. R.: Metabolomics driven analysis of Nigella sativa seeds identifies the impact of roasting on the chemical composition and immunomodulatory activity. Food Chemistry 398, 133906 (2023)
121.
Journal Article
Sarnowska, E.; Kubala, S.; Cwiek, P.; Sacharowski, S.; Oksinska, P.; Steciuk, J.; Zaborowska, M.; Szurmak, J. M.; Dubianski, R.; Maassen, A. et al.; Stachowiak, M.; Huettel, B.; Ciesla, M.; Nowicka, K.; Rolicka, A. T.; Alseekh, S.; Bucior, E.; Franzen, R.; Skoneczna, A.; Domagalska, M. A.; Amar, S.; Hajirezaei, M.-R.; Siedlecki, J. A.; Fernie, A. R.; Davis, S. J.; Sarnowski, T. J.: A non-canonical function of Arabidopsis ERECTA proteins and a role of the SWI3B subunit of the SWI/SNF chromatin remodeling complex in gibberellin signaling. The Plant Journal 115 (3), pp. 788 - 802 (2023)
122.
Journal Article
Sun, Y.; Alseekh, S.; Fernie, A. R.: Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants. GCB Bioenergy 29 (2), pp. 477 - 504 (2023)
123.
Journal Article
Tiozon, R. J. N.; Sreenivasulu, N.; Alseekh, S.; Sartagoda, K.J.D.; Usadel, B.; Fernie, A. R.: Metabolomics and machine learning technique revealed that germination enhances the multi-nutritional properties of pigmented rice. Communications Biology 6 (1), 1000 (2023)
124.
Journal Article
Yang, Z.; Liu, Z.; Xu, H.; Yufei, L.; Huang, S.; Cao, G.; Shi, M.; Zhu, J.; Zhou, J.; Li, R. et al.; Ding, Y.; Xiao, Y.; Liu, X.; Fernie, A. R.; Luo, J.: ArecaceaeMDB: A comprehensive multi-omics database for Arecaceae breeding and functional genomics studies. Plant Biotechnology Journal 21 (1), pp. 11 - 13 (2023)
125.
Journal Article
Yuan, P.; Xu, C.; He, N.; Lu, X.; Zhang, X.; Shang, J.; Zhu, H.; Gong, C.; Kuang, H.; Tang, T. et al.; Xu, Y.; Ma, S.; Sun, D.; Zhang, W.; Umer, M.J.; Shi, J.; Fernie, A. R.; Liu, W.; Luo, J.: Watermelon domestication was shaped by stepwise selection and regulation of the metabolome. Science China Life Sciences 66, pp. 579 - 594 (2023)
126.
Journal Article
Zhao, H.; He, Y.; Zhang, K.; Li, S.; Chen, Y.; He, M.; He, F.; Gao, B.; Yang, D.; Fan, Y. et al.; Zhu, X.; Yan, M.; Giglioli-Guivarc'h, N.; Hano, C.; Fernie, A. R.; Georgiev, M. I.; Dagmar, J.; Meglič, V.; Zhou, M.: Rewiring of the Seed Metabolome during Tartary Buckwheat Domestication. Plant Biotechnology Journal 21 (1), pp. 150 - 164 (2023)
127.
Journal Article
Zhu, F.; Sun, Y.; Jadhav, S. S.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: The Plant Metabolic Changes and the Physiological and Signaling Functions in the Responses to Abiotic Stress. Methods in Molecular Biology 2642, pp. 129 - 150 (2023)
128.
Journal Article
Porto, N.P.; Bret, R.S.C.; Souza, P.V.L.; Cândido-Sobrinho, S.A.; Medeiros, D.B.; Fernie, A. R.; Daloso, D. M.: Thioredoxins regulate the metabolic fluxes throughout the tricarboxylic acid cycle and associated pathways in a light-independent manner. Plant Physiology and Biochemistry 193, pp. 36 - 49 (2022)
129.
Journal Article
Ahouvi, Y.; Haber, Z.; Zach, Y. Y.; Rosental, L.; Toubiana, D.; Sharma, D.; Alseekh, S.; Tajima, H.; Fernie, A. R.; Brotman, Y. et al.; Blumwald, E.; Sade, N.: The Alteration Of Tomato CHLOROPLAST VESICULATION Positively Affects Whole-Plant Source–Sink Relations And Fruit Metabolism Under Stress Conditions. Plant and Cell Physiology 63 (12), pp. 2008 - 2026 (2022)
130.
Journal Article
Aleman, J.; H., G.; Thirumalaikumar, V. P.; Jander, G.; Fernie, A. R.; Skirycz, A.: OPDA, more than just a jasmonate precursor. Phytochemistry 204, 113432 (2022)
131.
Journal Article
Pinto, S. S.; Martins, A. O.; Fontes, L. F. P.; Oliveira, F. S.; Almeida, I. C.; Detoni, I. B.; Oliveira, L. A.; Silva, W. B.; Medeiros, D.B.; Picoli, E. A. T. et al.; Ribeiro, A.; Fernie, A. R.; DaMatta, F. M.; Martins, S. C. V.; Araújo, W. L.: Elevated [CO2] mitigates the impacts of heat stress in eucalyptus seedlings. Theoretical and Experimental Plant Physiology 34, pp. 447 - 462 (2022)
132.
Journal Article
Zhang, W.; Lai, C.; Huang, W.; Li, W.; Wu, S.; Kong, Q.; Hopkinson, A.; Fernie, A. R.; Siu, K.; Yan, S.: An eco-friendly, low-cost, and automated strategy for phosphoproteome profiling. Green Chemistry 24, pp. 9697 - 9708 (2022)
133.
Journal Article
Caldana, C.; Fernie, A. R.: Plant biology: Identification of the connecTOR linking metabolism, epigenetics and development. Current Biology 32 (22), pp. R1272 - R1274 (2022)
134.
Journal Article
Wiszniewski, A.A.G.; Uberegui, E.; Messer, M.; Sultanova, G.; Borghi, M.; Duarte, G. T.; Vicente, R.; Sageman-Furnas, K.; Fernie, A. R.; Nikoloski, Z. et al.; Laitinen, R. A.E.: Temperature-mediated flower size plasticity in Arabidopsis. iScience 25 (11), 105411 (2022)
135.
Journal Article
Kishor, P. B. K.; Tiozon, R. J. N.; Fernie, A. R.; Sreenivasulu, N.: Abscisic acid and its role in the modulation of plant growth, development, and yield stability. Trends in Plant Science 27 (12), pp. 1283 - 1295 (2022)
136.
Journal Article
Apriyanto, A.; Compart, J.; Zimmermann, V.; Alseekh, S.; Fernie, A. R.; Fettke, J.: Indication that starch and sucrose are biomarkers for oil yield in oil palm (Elaeis guineensis Jacq.). FOOD CHEMISTRY 393, 133361 (2022)
137.
Journal Article
Balparda, M.; Schmitz, J.; Duemmel, M.; Wuthenow, I. C.; Schmidt, M.; Alseekh, S.; Fernie, A. R.; Lercher, M. J.; Maurino, V. G.: Viridiplantae-specific GLXI and GLXII isoforms co-evolved and detoxify glucosone in planta. Plant Physiology 191 (2), pp. 1214 - 1233 (2022)
138.
Journal Article
Bohra, A.; Tiwari, A.; Kaur, P.; Ganie, S. A.; Raza, A.; Roorkiwal, M.; Mir, R. R.; Fernie, A. R.; Smýkal, P.; Varshney, R. K.: The Key to the Future Lies in the Past: Insights from Grain Legume Domestication and Improvement Should Inform Future Breeding Strategies. Plant and Cell Physiology 63 (11), pp. 1554 - 1572 (2022)
139.
Journal Article
Mehring, A.; Zayed, A.; Salem, M.A.; Alseekh, S.; Fernie, A.; Ulber, R.: Time-dependent behaviour of methyl jasmonate elicited cell suspension cultures of Ocimum species via untargeted mass spectrometry-based metabolomics. Industrial Crops and Products 187 (Part A), 115414 (2022)
140.
Journal Article
Sun, Y.; Guo, J.; Ruan, Y.; Zhang, T.; Fernie, A. R.; Yuan, H.: The recruitment of specific rhizospheric bacteria facilitates Stevia rebaudiana salvation under nitrogen and/or water deficit stresses. Industrial Crops and Products 187 (B), 115434 (2022)
141.
Journal Article
Li, Y.; Yang, Z.; Yang, C.; Liu, Z.; Shen, S.; Zhan, C.; Lyu, Y.; Zhang, F.; Li, K.; Shi, Y. et al.; Zhou, J.; Liu, X.; Fang, C.; Fernie, A. R.; Li, J.; Luo, J.: The NET locus determines the food taste, cooking and nutrition quality of rice. Science Bulletin 67, pp. 2045 - 2049 (2022)
142.
Journal Article
Yin, Z.; Dong, T.; Huang, W.; Du, M.; Chen, D.; Fernie, A. R.; Yi, G.; Yan, S.: Spatially resolved metabolomics reveals variety-specific metabolic changes in banana pulp during postharvest senescence. FOOD CHEMISTRY: X 15, 100371 (2022)
143.
Journal Article
Zhang, Y.; Fernie, A. R.: Metabolite profiling of Arabidopsis mutants of lower glycolysis. Scientific Data 9 (1), 614 (2022)
144.
Journal Article
Sayed, S.M.A.; Alseekh, S.; Siems, K.; Fernie, A. R.; Luyten, W.; Schmitz-Linneweber, C.; Saul, N.: Identification of a Hydroxygallic Acid Derivative, Zingibroside R1 and a Sterol Lipid as Potential Active Ingredients of Cuscuta chinensis Extract That Has Neuroprotective and Antioxidant Effects in Aged Caenorhabditis elegans. Nutrients 14 (19), 4199 (2022)
145.
Journal Article
Blankenagel, S.; Eggels, S.; Frey, M.; Grill, E.; Bauer, E.; Dawid, C.; Fernie, A. R.; Haberer, G.; Hammerl, R.; Medeiros, D.B. et al.; Ouzunova, M.; Presterl, T.; Ruß, V.; Schäufele, R.; Schlüter, U.; Tardieu, F.; Urbany, C.; Urzinger, S.; Weber, A. P. M.; Schön, C.-C.; Avramova, V.: Natural alleles of the abscisic acid catabolism gene ZmAbh4 modulate water use efficiency and carbon isotope discrimination in maize. The Plant Cell 34 (10), pp. 3860 - 3872 (2022)
146.
Journal Article
Chen, L.; Luo, J.; Jin, M.; Yang, N.; Liu, X.; Peng, Y.; Li, W.; Phillips, A.; Cameron, B.; Bernal, J. S. et al.; Rellán-Álvarez, R.; Sawers, R. J. H.; Liu, Q.; Yin, Y.; Ye, X.; Yan, J.; Zhang, Q.; Zhang, X.; Wu, S.; Gui, S.; Wei, W.; Wang, Y.; Luo, Y.; Jiang, C.; Deng, M.; Jin, M.; Jian, L.; Yu, Y.; Zhang, M.; Yang, X.; Hufford, M. B.; Fernie, A. R.; Warburton, M. L.; Ross-Ibarra, J.; Yan, J.: Genome sequencing reveals evidence of adaptive variation in the genus Zea. Nature Genetics 54, pp. 1736 - 1745 (2022)
147.
Journal Article
de Souza, L. P.; Naake, T.; Fernie, A. R.: Computational approaches that aid annotation in metabolomics. Trends in Plant Science 27 (10), pp. 1077 - 1078 (2022)
148.
Journal Article
Orf, I.; Tenenboim, H.; Omranian, N.; Nikoloski, Z.; Fernie, A. R.; Lisec, J.; Brotman, Y.; Bromke, M.A.: Transcriptomic and Metabolomic Analysis of a Pseudomonas-Resistant versus a Susceptible Arabidopsis Accession. International Journal of Molecular Sciences 23 (20), 12087 (2022)
149.
Journal Article
Zhan, C.; Shen, S.; Yang, C.; Liu, Z.; Fernie, A. R.; Graham, I. A.; Luo, J.: Plant metabolic gene clusters in the multi-omics era. Trends in Plant Science 27 (10), pp. 981 - 1001 (2022)
150.
Journal Article
Barros, J. A. S.; Cavalcanti, J. H. F.; Pimentel, K. G.; Medeiros, D.B.; Silva, J. C. F.; Condori-Apfata, J. A.; Lapidot-Cohen, T.; Brotman, Y.; Nunes-Nesi, A.; Fernie, A. R. et al.; Avin-Wittenberg, T.; Araújo, W. L.: The Significance of WRKY45 Transcription Factor in Metabolic Adjustments During Dark-induced Leaf Senescence. Plant, Cell and Environment (9), pp. 2682 - 2695 (2022)
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