Complete publication list

Publications of Alisdair Fernie

Journal Article (588)

  1. 1.
    Tohge, T.; Borghi, M.; Fernie, A. R.: The natural variance of the Arabidopsis floral secondary metabolites. Scientific Data 5, 180051 (2018)
  2. 2.
    Del-Saz, N. F.; Ribas-Carbo, M.; McDonald, A. E.; Lambers, H.; Fernie, A. R.; Florez-Sarasa, I. D.: An In Vivo Perspective of the Role(s) of the Alternative Oxidase Pathway. Trends in Plant Science 23 (3), pp. 206 - 219 (2018)
  3. 3.
    Alhajturki, D.; Muralidharan, S.; Nurmi, M.; Rowan, B. A.; Lunn, J. E.; Boldt, H.; Salem, M.A.; Alseekh, S.; Jorzig, C.; Feil, R. et al.; Giavalisco, P.; Fernie, A. R.; Weigel, D.; Laitinen, R.: Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana. New Phytologist 217 (1), pp. 392 - 406 (2018)
  4. 4.
    Andersson, M.; Turesson, H.; Arrivault, S.; Zhang, Y.; Fält, A.-S.; Fernie, A. R.; Hofvander, P.: Inhibition of plastid PPase and NTT leads to major changes in starch and tuber formation in potato. Journal of Experimental Botany 69 (8), pp. 1913 - 1924 (2018)
  5. 5.
    Avin-Wittenberg, T.; Baluška, F.; Bozhkov, P.V.; Elander, P.H.; Fernie, A. R.; Galili, G.; Hassan, A.; Hofius, D.; Isono, E.; Le Bars, R. et al.; Masclaux-Daubresse, C.; Minina, E.A.; Peled-Zehavi, H.; Coll, N.S.; Sandalio, L.M.; Satiat-Jeunemaitre, B.; Sirko, A.; Testillano, P.S.; Batoko, H.: Autophagy-related approaches for improving nutrient use efficiency and crop yield protection. Journal of Experimental Botany 69 (6), pp. 1335 - 1353 (2018)
  6. 6.
    Cubillos, A.; Tong, H.; Alseekh, S.; de Abreu e Lima, F.; Yu, J.; Fernie, A. R.; Nikoloski, Z.; Laitinen, R.: Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat. Heredity 120, pp. 463 - 473 (2018)
  7. 7.
    Del-Saz, N. F.; Ribas-Carbo, M.; McDonald, A. E.; Lambers, H.; Fernie, A. R.; Florez-Sarasa, I. D.: An In Vivo Perspective of the Role(s) of the Alternative Oxidase Pathway. Trends in Plant Science 23 (3), pp. 206 - 219 (2018)
  8. 8.
    Huang, L.; Pyc, M.; Alseekh, S.; McCarty, D. R.; de Crecy-Lagard, V.; Gregory III, J. F.; Henry, C. S.; Fernie, A. R.; Mullen, R. T.; Hanson, A. D.: A plastidial pantoate transporter with a potential role in pantothenate synthesis. Biochemical Journal 475, pp. 813 - 825 (2018)
  9. 9.
    Monné, M.; Daddabbo, L.; Gagneul, D.; Obata, T.; Hielscher, B.; Palmieri, L.; Miniero, D. V.; Fernie, A. R.; Weber, A. P. M.; Palmieri, F.: Uncoupling proteins 1 and 2 (UCP1 and UCP2) from Arabidopsis thaliana are mitochondrial transporters of aspartate, glutamate, and dicarboxylates. The Journal of Biological Chemistry 293 (11), pp. 4213 - 4227 (2018)
  10. 10.
    Nietzsche, M.; Guerra, T.; Alseekh, S.; Wiermer, M.; Sonnewald, S.; Fernie, A. R.; Börnkea, F.: STOREKEEPER RELATED1/G-element binding protein (STKR1) interacts with protein kinase SnRK1. Plant Physiology 176 (2), pp. 1773 - 1792 (2018)
  11. 11.
    Rosa-Tellez, S.; Djoro Anoman, A.; Flores-Tornero, M.; Toujani, W.; Alseekh, S.; Fernie, A. R.; Nebauer, S. G.; Munoz-Bertomeu, J.; Segura, J.; Ros, R.: Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth. Plant Physiology 176 (2), pp. 1182 - 1198 (2018)
  12. 12.
    Sonnewald, U.; Fernie, A. R.: Next-generation strategies for understanding and influencing source–sink relations in crop plants. Current Opinion in Plant Biology 43, pp. 63 - 70 (2018)
  13. 13.
    Timm, S.; Giese, J.; Engel, N.; Wittmiß, M.; Florian, A.; Fernie, A. R.; Bauwe, H.: T-protein is present in large excess over the other proteins of the glycine cleavage system in leaves of Arabidopsis. Planta 247 (1), pp. 41 - 51 (2018)
  14. 14.
    Wen, W.; Jin, M.; Li, K.; Liu, H.; Xiao, Y.; Zhao, M.; Alseekh, S.; Li, W.; de Abreu e Lima, F.; Brotman, Y. et al.; Willmitzer, L.; Fernie, A. R.; Yan, J.: An integrated multi-layered analysis of the metabolic networks of different tissues uncovers key genetic components of primary metabolism in maize. The Plant Journal 93 (6), pp. 1116 - 1128 (2018)
  15. 15.
    Wu, S.; Tohge, T.; Cuadros-Inostroza, A. C.; Tong, H.; Tenenboim, H.; Kooke, R.; Méret, M.; Keurentjes, J. B.; Nikoloski, Z.; Fernie, A. R. et al.; Willmitzer, L.; Brotman, Y.: Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions. Molecular Plant 11 (1), pp. 118 - 134 (2018)
  16. 16.
    Zhu, G.; Wang, S.; Huang, Z.; Zhang, S.; Liao, Q.; Zhang, C.; Lin, T.; Qin, M.; Peng, M.; Yang, C. et al.; Cao, X.; Han, X.; Wang, X.; van der Knaap, E.; Zhang, Z.; Cui, X.; Klee, H.; Fernie, A. R.; Luo, J.; Huang, S.: Rewiring of the Fruit Metabolome in Tomato Breeding. Cell 172 (1), pp. 249 - 261.e12 (2018)
  17. 17.
    de Oliveira Silva, F. M.; Lichtenstein, G.; Alseekh, S.; Rosado-Souza, L.; Conte, M.; Suguiyama, V. F.; Lira, B. S.; Fanourakis, D.; Usadel, B.; Bhering, L. L. et al.; DaMatta, F. M.; Sulpice, R.; Araújo, W. L.; Rossi, M.; de Setta, N.; Fernie, A. R.; Carrari, F.; Nunes-Nesi, A.: The genetic architecture of photosynthesis and plant growth-related traits in tomato. Plant, Cell and Environment 41 (2), pp. 327 - 341 (2018)
  18. 18.
    Borghi, M.; Fernie, A. R.: Floral Metabolism of Sugars and Amino Acids: Implications for Pollinators’ Preferences and Seed and Fruit Set. Plant Physiology 175 (4), pp. 1510 - 1524 (2017)
  19. 19.
    Jorge, T. F.; Duro, N.; da Costa, M.; Florian, A.; Ramalho, J. C.; Ribeiro-Barros, A. I.; Fernie, A. R.; António, C.: GC-TOF-MS analysis reveals salt stress-responsive primary metabolites in Casuarina glauca tissues. Metabolomics 13 (8), 95 (2017)
  20. 20.
    Alseekh, S.; Tong, H. (Mathematical Modelling and Systems Biology - Nikoloski, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society), H.; Scossa, F.; Brotman, Y.; Vigroux, F.; Tohge, T.; Ofner, I.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Canalization of Tomato Fruit Metabolism. Plant Cell 29 (11), pp. 2753 - 2765 (2017)
  21. 21.
    Arrivault, S.; Obata, T.; Szecówka, M.; Mengin, V.; Guenther, M.; Höhne, M.; Fernie, A. R.; Stitt, M.: Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation. Journal of Experimental Botany 68, pp. 283 - 298 (2017)
  22. 22.
    Barros, J. A. S.; Cavalcanti, J. H. F.; Medeiros, D. B.; Nunes-Nesi, A.; Avin-Wittenberg, T.; Fernie, A. R.; Araujo, W. L.: Autophagy Deficiency Compromises Alternative Pathways of Respiration following Energy Deprivation in Arabidopsis thaliana. Plant Physiology 175 (1), pp. 62 - 76 (2017)
  23. 23.
    Barros, J. A. S.; Cavalcanti, J. H. F.; Medeiros, D. B.; Nunes-Nesi, A.; Avin-Wittenberg, T.; Fernie, A. R.; Araujo, W. L.: Commonalities and differences in plants deficient in autophagy and alternative pathways of respiration on response to extended darkness. Plant Signaling & Behavior 12 (11), e1377877 (2017)
  24. 24.
    Borghi, M.; Fernie, A. R.; Schiestl, F. P.; Bouwmeester, H. J.: The Sexual Advantage of Looking, Smelling, and Tasting Good: The Metabolic Network that Produces Signals for Pollinators. Trends in Plant Science (2017)
  25. 25.
    Daloso, D. M.; Medeiros, D.B.; dos Anjos, L.; Yoshida, T.; Araujo, W. L.; Fernie, A. R.: Metabolism within the specialized guard cells of plants. New Phytologist 216 (4), pp. 1018 - 1033 (2017)
  26. 26.
    Eisenhut, M.; Bräutigam, A.; Timm, S.; Florian, A.; Tohge, T.; Fernie, A. R.; Bauwe, H.; Weber, A. P.M.: Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered \CO2\ availability. Molecular Plant 10 (1), pp. 47 - 61 (2017)
  27. 27.
    Esteves-Ferreira, A. A.; Inaba, M.; Obata, T.; Fort, A.; Fleming, G. T. A.; Araujo, W. L.; Fernie, A. R.; Sulpice, R.: A Novel Mechanism, Linked to Cell Density, Largely Controls Cell Division in Synechocystis. Plant Physiology 174 (4), pp. 2166 - 2182 (2017)
  28. 28.
    Estrada-Johnson, E.; Csukasi, F.; Pizarro, C. M.; Vallarino, J. G.; Kiryakova, Y.; Vioque, A.; Brumos, J.; Medina-Escobar, N.; Botella, M. A.; Alonso, J. M. et al.; Fernie, A. R.; Sanchez-Sevilla, J. F.; Osorio, S.; Valpuesta, V.: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science (2017)
  29. 29.
    Estrada-Johnson, E.; Csukasi, F.; Pizarro, C. M.; Vallarino, J. G.; Kiryakova, Y.; Vioque, A.; Merchante, C.; Brumos, J.; Medina-Escobar, N.; Botella, M. A. et al.; Alonso, J. M.; Fernie, A. R.; Sánchez-Sevilla, J. F.; Osorio, S.; Valpuesta, V.: Corrigendum: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science 8, 1305 (2017)
  30. 30.
    Flores-Tornero, M.; Anoman, A. D.; Rosa-Tellez, S.; Toujani, W.; Weber, A. P. M.; Eisenhut, M.; Kurz, S.; Alseekh, S.; Fernie, A. R.; Munoz-Bertomeu, J. et al.; Ros, R.: Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants. The Plant Journal 89 (6), pp. 1146 - 1158 (2017)
  31. 31.
    Fluegel, F.; Timm, S.; Arrivault, S.; Florian, A.; Stitt, M.; Fernie, A. R.; Bauwe, H.: The Photorespiratory Metabolite 2-Phosphoglycolate Regulates Photosynthesis and Starch Accumulation in Arabidopsis. The Plant Cell 29 (10), pp. 2537 - 2551 (2017)
  32. 32.
    Gago, J.; Fernie, A. R.; Nikoloski, Z.; Tohge, T.; Martorell, S.; Mariano Escalona, J.; Ribas-Carbo, M.; Flexas, J.; Medrano, H.: Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard. Plant Methods (2017)
  33. 33.
    Geigenberger, P.; Thormählen, I.; Daloso, D. M.; Fernie, A. R.: The Unprecedented Versatility of the Plant‎ Thioredoxin System. Trends in Plant Science 22 (3), pp. 249 - 262 (2017)
  34. 34.
    Goldy, C.; Svetaz, L. A.; Bustamante, C. A.; Allegrini, M.; Valentini, G. H.; Drincovich, M. F.; Fernie, A. R.; Lara, M. V.: Comparative proteomic and metabolomic studies between Prunus persica genotypes resistant and susceptible to Taphrina deformans suggest a molecular basis of resistance. Plant Physiology and Biochemistry 118, pp. 245 - 255 (2017)
  35. 35.
    Han, X.; Tohge, T.; Lalor, P.; Dockery, P.; Devaney, N.; Esteves-Ferreira, A. A.; Fernie, A. R.; Sulpice, R.: Phytochrome A and B Regulate Primary Metabolism in Arabidopsis Leaves in Response to Light. Frontiers in Plant Science 8, 1394 (2017)
  36. 36.
    Ishiga, Y.; Watanabe, M.; Ishiga, T.; Tohge, T.; Matsuura, T.; Ikeda , Y.; Hoefgen, R.; Fernie, A. R.; Mysore, K.S.: The SAL-PAP Chioroplast Retrograde Pathway Contributes to Plant Immunity by Regulating Glucosinolate Pathway and Phytohormone Signaling. Molecular Plant-Microbe Interactions 30 (10), pp. 829 - 841 (2017)
  37. 37.
    Ishihara, H.; Moraes, T. A.; Pyl, E. T.; Schulze, W. X.; Obata, T.; Scheffel, A.; Fernie, A. R.; Sulpice, R.; Stitt, M.: Growth rate correlates negatively with protein turnover in Arabidopsis accessions. The Plant Journal 91 (3), pp. 416 - 429 (2017)
  38. 38.
    Jin, M.; Zhang, X.; Zhao, M.; Deng, M.; Du, Y.; Zhou, Y.; Wang, S.; Tohge, T.; Fernie, A. R.; Willmitzer, L. et al.; Brotman, Y.; Yan, J.; Weiwei, W.: Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis. BMC Plant Biology 17 (1), 17 (2017)
  39. 39.
    Joshi, V.; Fernie, A. R.: Citrulline metabolism in plants. Amino Acids 49 (9), pp. 1543 - 1559 (2017)
  40. 40.
    Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Todaka, D.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants. Plant Biotechnology Journal 15 (4), pp. 458 - 471 (2017)
  41. 41.
    Malinova, I.; Alseekh, S.; Feil, R.; Fernie, A. R.; Baumann, O.; Schöttler, M. A.; Lunn, J. E.; Fettke, J.: Starch synthase 4 and plastidal phosphorylase differentially affect starch granule number and morphology. Plant Physiology (2017)
  42. 42.
    Matthijs, M.; Fabris, M.; Obata, T.; Foubert, I.; Franco‐Zorrilla, J. M.; Solano, R.; Fernie, A. R.; Vyverman, W.; Goossens, A.: The transcription factor bZIP14 regulates the TCA cycle in the diatom Phaeodactylum tricornutum. EMBO Journal 36 (8), pp. 959 - 1116 (2017)
  43. 43.
    Medeiros, D.B.; Barros, K. A.; Barros, J. A. S.; Omena-Garcia, R. P.; Arrivault, S.; Sanglard, L. M. V. P.; Detmann, K. C.; Silva, W. B.; Daloso, D. M.; DaMatta, F. M. et al.; Nunes-Nesi, A.; Fernie, A. R.; Araujo, W. L.: Impaired Malate and Fumarate Accumulation Due to the Mutation of the Tonoplast Dicarboxylate Transporter Has Little Effects on Stomatal Behavior. Plant Physiology 175 (3), pp. 1068 - 1081 (2017)
  44. 44.
    Menezes-Silva, P. E.; Sanglard, L. M. V. P.; Avila, R. T.; Morais, L. E.; Martins, S. C. V.; Nobres, P.; Patreze, C. M.; Ferreira, M. A.; Araujo, W. L.; Fernie, A. R. et al.; DaMatta, F. M.: Photosynthetic and metabolic acclimation to repeated drought events play key roles in drought tolerance in coffee. Journal of Experimental Botany 68 (15), pp. 4309 - 4322 (2017)
  45. 45.
    Modde, K.; Timm, S.; Florian, A.; Michl, K.; Fernie, A. R.; Bauwe, a. H.: High serine:glyoxylate aminotransferase activity lowers leaf daytime serine levels, inducing the phosphoserine pathway in Arabidopsis. Journal of Experimental Botany 68 (3), pp. 643 - 656 (2017)
  46. 46.
    Nelson, D. R.; Khraiwesh, B.; Fu, W.; Alseekh, S.; Jaiswal, A.; Chaiboonchoe, A.; Hazzouri, K. M.; O'Connor, M. J.; Butterfoss, G. L.; Drou, N. et al.; Rowe, J. D.; Harb, J.; Fernie, A. R.; Gunsalus, K. C.; Salehi-Ashtiani, K.: The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization. eLife (2017)
  47. 47.
    Peng, M.; Shahzad, R.; Gul, A.; Subthain, H.; Shen, S.; Lei, L.; Zheng, Z.; Zhou, J.; Lu, D.; Wang, S. et al.; Nishawy, E.; Liu, X.; Tohge, T.; Fernie, A. R.; Luo, J.: Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance. Nature Communications (2017)
  48. 48.
    Poplawski, P.; Tohge, T.; Boguslawska, J.; Rybicka, B.; Tanski, Z.; Trevino, V.; Fernie, A. R.; Piekielko-Witkowska, A.: Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1863 (3), pp. 744 - 752 (2017)
  49. 49.
    Robaina-Estévez, S.; Daloso, D. M.; Zhang, Y.; Fernie, A. R.; Nikoloski, Z.: Resolving the central metabolism of Arabidopsis guard cells. Scientific Reports 7, 8307 (2017)
  50. 50.
    Romero-Munar, A.; Del-Saz, N. F.; Ribas-Carbó, M.; Flexas, J.; Baraza, E.; Florez-Sarasa, I. D.; Fernie, A. R.; Gulías, J.: Arbuscular mycorrhizal symbiosis with Arundo donax decreases root respiration and increases both photosynthesis and plant biomass accumulation. Plant Cell Environment 40 (7), pp. 1115 - 1126 (2017)
 
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